CuGenDBv2

Gene ID	Cmc00g0001171
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Photosystem II protein D1
Genome location	CMiso1.1chr00:1134258..1134765
RNA-Seq Expression	Cmc00g0001171
Synteny	Cmc00g0001171
Gene Ontology terms	GO:0009635 - response to herbicide (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CBI31590.3 unnamed protein product, partial [Vitis vinifera]

1.4e-66

93.57

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Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSDGVAGVFGGSLFSPMHASLVTSSLIRESRENESANSGYRFGQEEETENLVAAHAYFG
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSDGVAGVFGGSLFS MH SLVTSSLIRE+ ENESAN+GYRFGQEEET N+VAAH YFG
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSDGVAGVFGGSLFSPMHASLVTSSLIRESRENESANSGYRFGQEEETENLVAAHAYFG

Query:  RLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        RLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  RLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

KAG4914214.1 hypothetical protein JHK87_051771 [Glycine soja]

2.2e-64

89.12

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Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD-------GVAGVFGGSLFSPMHASLVTSSLIRESRENESANSGYRFGQEEETENLV
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSD       GVAGVFGGSLFS MH SLVTSSLIRE+ ENESAN GYRFGQEEET N+V
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD-------GVAGVFGGSLFSPMHASLVTSSLIRESRENESANSGYRFGQEEETENLV

Query:  AAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        AAH YFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  AAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

KAG5070533.1 hypothetical protein JHK85_002910 [Glycine max]

2.2e-64

89.12

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Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD-------GVAGVFGGSLFSPMHASLVTSSLIRESRENESANSGYRFGQEEETENLV
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSD       GVAGVFGGSLFS MH SLVTSSLIRE+ ENESAN GYRFGQEEET N+V
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD-------GVAGVFGGSLFSPMHASLVTSSLIRESRENESANSGYRFGQEEETENLV

Query:  AAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        AAH YFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  AAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

QCD89467.1 photosystem II reaction center D1 protein [Vigna unguiculata]

2.2e-64

89.12

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Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD-------GVAGVFGGSLFSPMHASLVTSSLIRESRENESANSGYRFGQEEETENLV
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSD       GVAGVFGGSLFS MH SLVTSSLIRE+ ENESAN GYRFGQEEET N+V
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD-------GVAGVFGGSLFSPMHASLVTSSLIRESRENESANSGYRFGQEEETENLV

Query:  AAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        AAH YFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  AAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

YP_009336173.1 photosystem II protein D1 [Ulmus macrocarpa]

1.0e-64

80.59

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Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSD                              GVAGVFGGSLFS MH SLVTSSLIRE
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE

Query:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

TrEMBL top hits

e value

%identity

Alignment

A0A1L5YDG6 Photosystem II protein D1

4.8e-65

80.59

Show/hide

Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSD                              GVAGVFGGSLFS MH SLVTSSLIRE
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE

Query:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

A0A1L5YDY6 Photosystem II protein D1

4.8e-65

80.59

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Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSD                              GVAGVFGGSLFS MH SLVTSSLIRE
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE

Query:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

A0A2N9I457 32 kDa thylakoid membrane protein

8.8e-67

93.57

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Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSDGVAGVFGGSLFSPMHASLVTSSLIRESRENESANSGYRFGQEEETENLVAAHAYFG
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSDGVAGVFGGSLFS MH SLVTSSLIRE+ ENESAN GYRFGQEEET N+VAAH YFG
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSDGVAGVFGGSLFSPMHASLVTSSLIRESRENESANSGYRFGQEEETENLVAAHAYFG

Query:  RLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        RLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  RLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

A0A4D6LLK0 Photosystem II reaction center D1 protein

1.1e-64

89.12

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Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD-------GVAGVFGGSLFSPMHASLVTSSLIRESRENESANSGYRFGQEEETENLV
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSD       GVAGVFGGSLFS MH SLVTSSLIRE+ ENESAN GYRFGQEEET N+V
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD-------GVAGVFGGSLFSPMHASLVTSSLIRESRENESANSGYRFGQEEETENLV

Query:  AAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        AAH YFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  AAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

A0A5N6NFT2 32 kDa thylakoid membrane protein

1.4e-64

89.66

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Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSDGV-----AGVFGGSLFSPMHASLVTSSLIRESRENESANSGYRFGQEEETENLVAA
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSDG+     AGVFGGSLFS MH SLVTSSLIRE+ ENESAN GYRFGQEEET N+VAA
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSDGV-----AGVFGGSLFSPMHASLVTSSLIRESRENESANSGYRFGQEEETENLVAA

Query:  HAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        H YFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  HAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

SwissProt top hits

e value

%identity

Alignment

A6MMA2 Photosystem II protein D1

1.0e-64

77.06

Show/hide

Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSD                              GVAGVFGGSLFS MH SLVTSSLIRE
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE

Query:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        + ENESAN+GYRFGQEEET N+VAAH YFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

A6MMS4 Photosystem II protein D1

1.0e-64

77.06

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Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSD                              GVAGVFGGSLFS MH SLVTSSLIRE
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE

Query:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        + ENESAN+GYRFGQEEET N+VAAH YFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

Q09MJ8 Photosystem II protein D1

1.0e-64

77.06

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Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSD                              GVAGVFGGSLFS MH SLVTSSLIRE
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE

Query:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        + ENESAN+GYRFGQEEET N+VAAH YFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

Q70Y17 Photosystem II protein D1

1.0e-64

77.06

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Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSD                              GVAGVFGGSLFS MH SLVTSSLIRE
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE

Query:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        + ENESAN+GYRFGQEEET N+VAAH YFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

Q7YJY8 Photosystem II protein D1

1.0e-64

77.06

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Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSD                              GVAGVFGGSLFS MH SLVTSSLIRE
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE

Query:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        + ENESAN+GYRFGQEEET N+VAAH YFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

9.6e-66

77.06

Show/hide

Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE
        MGREWELSFRLGMRPWIAVAYSAPVAAATA+FLIYPIGQGSFSD                              GVAGVFGGSLFS MH SLVTSSLIRE
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSD------------------------------GVAGVFGGSLFSPMHASLVTSSLIRE

Query:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
        + ENESAN GYRFGQEEET N+VAAH YFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
Subjt:  SRENESANSGYRFGQEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

ATCG00270.1 photosystem II reaction center protein D

2.7e-15

30.81

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Query:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSF------------------------------SDGVAGVFGGSLFSPMHASLVTSSLIRE
        M R++EL+  + +RP+ A+A+S P+A   ++FLIYP+GQ  +                                GVAGV G +L   +H + V ++L   
Subjt:  MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSF------------------------------SDGVAGVFGGSLFSPMHASLVTSSLIRE

Query:  SRENESANSGYRFG--QEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN
          + + AN+   F   Q EET ++V A+ ++ ++     +F+N R LHFF+   PV G+W +ALG+  +A N
Subjt:  SRENESANSGYRFG--QEEETENLVAAHAYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGTCGAGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTCTTTTCTTGATCTAC
CCAATTGGTCAAGGAAGCTTTTCTGACGGTGTAGCTGGTGTATTCGGGGGCTCCCTATTCAGTCCTATGCATGCTTCCTTGGTCACTTCTAGTTTGATCAGGGAA
AGCAGAGAAAATGAATCTGCTAATTCAGGTTACAGATTCGGTCAAGAGGAAGAAACTGAGAATCTCGTAGCTGCTCATGCTTATTTTGGCCGATTGATCTTCCAA
TATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAAC
TGA

mRNA sequence

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Protein sequence

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MGREWELSFRLGMRPWIAVAYSAPVAAATALFLIYPIGQGSFSDGVAGVFGGSLFSPMHASLVTSSLIRESRENESANSGYRFGQEEETENLVAAHAYFGRLIFQ
YASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN

Cmc00g0001171 (gene) of Melon (Charmono) v1.1 genome