; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc00g0001301 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc00g0001301
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibosomal protein S13
Genome locationCMiso1.1chr00:1371622..1371972
RNA-Seq ExpressionCmc00g0001301
SyntenyCmc00g0001301
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001892 - Ribosomal protein S13
IPR010979 - Ribosomal protein S13-like, H2TH
IPR018269 - Ribosomal protein S13, conserved site
IPR027437 - 30s ribosomal protein S13, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEN56112.1 ribosomal protein S13 [Cucumis melo subsp. melo]9.8e-58100Show/hide
Query:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
        MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
Subjt:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG

Query:  QRTHTNARTCRKRIRK
        QRTHTNARTCRKRIRK
Subjt:  QRTHTNARTCRKRIRK

XP_038887163.1 ribosomal protein S13, mitochondrial [Benincasa hispida]1.8e-5697.41Show/hide
Query:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
        MSYISGARSV DKQVRIAST+IDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFIS+SCYRGIRHQDGLPLRG
Subjt:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG

Query:  QRTHTNARTCRKRIRK
        QRTHTNARTCRKRIRK
Subjt:  QRTHTNARTCRKRIRK

YP_003587259.1 ribosomal protein S13 [Citrullus lanatus]1.0e-5495.69Show/hide
Query:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
        MSYISGAR VADKQVRIA T+IDGIGPKKAIQV YRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFIS+SCYRGIRHQDGLPLRG
Subjt:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG

Query:  QRTHTNARTCRKRIRK
        QRTHTNARTCRKRIRK
Subjt:  QRTHTNARTCRKRIRK

YP_009565407.1 ribosomal protein S13 [Morus notabilis]7.8e-5593.97Show/hide
Query:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
        MSYISGARSVAD+QVRIAST++DGIGPKKAIQVRYRLGISGNIKIKELTKYQID+IEQMIGQDH+VHWELKRGERADIERFIS+SCYRGIRHQDGLPLRG
Subjt:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG

Query:  QRTHTNARTCRKRIRK
        QRTHTNARTCRK IRK
Subjt:  QRTHTNARTCRKRIRK

YP_009913633.1 ribosomal protein S13 [Luffa acutangula]4.9e-5798.28Show/hide
Query:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
        MSYISGARSVADKQVRIAST+IDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFIS+SCYRGIRHQDGLPLRG
Subjt:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG

Query:  QRTHTNARTCRKRIRK
        QRTHTNARTCRKRIRK
Subjt:  QRTHTNARTCRKRIRK

TrEMBL top hitse value%identityAlignment
A0A3S9JII2 Ribosomal protein S134.7e-58100Show/hide
Query:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
        MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
Subjt:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG

Query:  QRTHTNARTCRKRIRK
        QRTHTNARTCRKRIRK
Subjt:  QRTHTNARTCRKRIRK

A0A411GS20 Ribosomal protein S133.8e-5593.97Show/hide
Query:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
        MSYISGARSVAD+QVRIAST++DGIGPKKAIQVRYRLGISGNIKIKELTKYQID+IEQMIGQDH+VHWELKRGERADIERFIS+SCYRGIRHQDGLPLRG
Subjt:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG

Query:  QRTHTNARTCRKRIRK
        QRTHTNARTCRK IRK
Subjt:  QRTHTNARTCRKRIRK

A0A7D6C5F5 Ribosomal protein S132.4e-5798.28Show/hide
Query:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
        MSYISGARSVADKQVRIAST+IDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFIS+SCYRGIRHQDGLPLRG
Subjt:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG

Query:  QRTHTNARTCRKRIRK
        QRTHTNARTCRKRIRK
Subjt:  QRTHTNARTCRKRIRK

D5I3C9 Ribosomal protein S134.9e-5595.69Show/hide
Query:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
        MSYISGAR VADKQVRIA T+IDGIGPKKAIQV YRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFIS+SCYRGIRHQDGLPLRG
Subjt:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG

Query:  QRTHTNARTCRKRIRK
        QRTHTNARTCRKRIRK
Subjt:  QRTHTNARTCRKRIRK

G3EU28 Ribosomal protein S134.7e-58100Show/hide
Query:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
        MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
Subjt:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG

Query:  QRTHTNARTCRKRIRK
        QRTHTNARTCRKRIRK
Subjt:  QRTHTNARTCRKRIRK

SwissProt top hitse value%identityAlignment
P05488 Ribosomal protein S13, mitochondrial2.8e-5591.38Show/hide
Query:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
        M YISGAR V D+QVRIAST+IDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDH+VHWELKRGERADIER IS+SCYRGIRHQDG PLRG
Subjt:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG

Query:  QRTHTNARTCRKRIRK
        QRTHTNARTCRK IRK
Subjt:  QRTHTNARTCRKRIRK

P07924 Ribosomal protein S13, mitochondrial8.3e-5286.21Show/hide
Query:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
        MSYISGARS+ D+QVRIAST++DGIGPKKAIQ+RYRLGISGNIK+ ELTKYQIDQIEQMI QDH+VHWELKRGERADIER IS+S YRGIRHQDG PLRG
Subjt:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG

Query:  QRTHTNARTCRKRIRK
        QRTHTNART RK+IRK
Subjt:  QRTHTNARTCRKRIRK

P08977 Ribosomal protein S13, mitochondrial4.9e-5287.07Show/hide
Query:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
        MSYISGARS+ D+QVRIAST++DGIGPKKAIQ+RYRLGISGNIKI ELTKYQIDQIEQMI QDH+VHWELKRGERADIER IS+S YRGIRHQDG PLRG
Subjt:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG

Query:  QRTHTNARTCRKRIRK
        QRTHTNART RK+IRK
Subjt:  QRTHTNARTCRKRIRK

P15758 Ribosomal protein S13, mitochondrial1.4e-5188.79Show/hide
Query:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
        MSYISGAR VAD+QVRIAST++DGIGPKKAIQVR RLG  GNIK KELTKYQIDQIEQM GQDH+VHWELKRGERADIERFIS+SCYRGIRHQDGLPLRG
Subjt:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG

Query:  QRTHTNARTCRKRIRK
        QR+HTNART RKRIRK
Subjt:  QRTHTNARTCRKRIRK

P23209 Ribosomal protein S13, mitochondrial1.4e-5490.52Show/hide
Query:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG
        M YISGAR VADKQVRIA T++ GIGPKKAIQV YRLGISGNIKIKELTKYQIDQ+EQMIGQDH+VHWELKRGERADIERFIS+SCYRGIRHQDGLPLRG
Subjt:  MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRG

Query:  QRTHTNARTCRKRIRK
        QRTHTNARTCRK+IRK
Subjt:  QRTHTNARTCRKRIRK

Arabidopsis top hitse value%identityAlignment
AT1G22780.1 Ribosomal protein S13/S18 family1.3e-0428.81Show/hide
Query:  KQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIG---QDHIVHWELKRGE-------------------RADIERFISLSCYRGI
        +++  A T I GIG + A  V  +  +  N +  EL+  +ID +  ++    Q  I  W L R +                   R D+ER   +  +RG+
Subjt:  KQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIG---QDHIVHWELKRGE-------------------RADIERFISLSCYRGI

Query:  RHQDGLPLRGQRTHTNAR
        RH  GL +RGQ T T  R
Subjt:  RHQDGLPLRGQRTHTNAR

AT1G34030.1 Ribosomal protein S13/S18 family1.3e-0428.81Show/hide
Query:  KQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIG---QDHIVHWELKRGE-------------------RADIERFISLSCYRGI
        +++  A T I GIG + A  V  +  +  N +  EL+  +ID +  ++    Q  I  W L R +                   R D+ER   +  +RG+
Subjt:  KQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIG---QDHIVHWELKRGE-------------------RADIERFISLSCYRGI

Query:  RHQDGLPLRGQRTHTNAR
        RH  GL +RGQ T T  R
Subjt:  RHQDGLPLRGQRTHTNAR

AT1G77750.1 Ribosomal protein S13/S18 family2.1e-1337.74Show/hide
Query:  ISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT
        +  A    +K ++    ++ GIG +K+ QV   LGI+  +  ++LT  ++  + + +GQ H    EL+R   ++I+R + + CYRG RH+ GLP RGQRT
Subjt:  ISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT

Query:  HTNART
         TNART
Subjt:  HTNART

AT4G09800.1 S18 ribosomal protein1.3e-0428.81Show/hide
Query:  KQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIG---QDHIVHWELKRGE-------------------RADIERFISLSCYRGI
        +++  A T I GIG + A  V  +  +  N +  EL+  +ID +  ++    Q  I  W L R +                   R D+ER   +  +RG+
Subjt:  KQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIG---QDHIVHWELKRGE-------------------RADIERFISLSCYRGI

Query:  RHQDGLPLRGQRTHTNAR
        RH  GL +RGQ T T  R
Subjt:  RHQDGLPLRGQRTHTNAR

AT5G14320.1 Ribosomal protein S13/S18 family1.1e-0930.56Show/hide
Query:  ISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT
        + G    A+K++  +   I GIG  +A Q+   L +   I  K++ + ++  +   + + +++  +L+R     I+R   + CYRG+RH  GLP RGQRT
Subjt:  ISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRT

Query:  HTNARTCR
          N RT +
Subjt:  HTNARTCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATATATTTCAGGAGCAAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACTCAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGGTTCGTTATCGATT
AGGTATCAGTGGGAACATAAAGATCAAAGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATAGGTCAAGATCATATTGTTCATTGGGAATTGAAGAGGGGAG
AACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCGTCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACTTGT
CGCAAGCGAATTCGGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATATATTTCAGGAGCAAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACTCAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGGTTCGTTATCGATT
AGGTATCAGTGGGAACATAAAGATCAAAGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATAGGTCAAGATCATATTGTTCATTGGGAATTGAAGAGGGGAG
AACGAGCAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCGTCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACTTGT
CGCAAGCGAATTCGGAAATGA
Protein sequenceShow/hide protein sequence
MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCYRGIRHQDGLPLRGQRTHTNARTC
RKRIRK