; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc00g0001491 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc00g0001491
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description30S ribosomal protein S12, chloroplastic
Genome locationCMiso1.1chr00:1592527..1592829
RNA-Seq ExpressionCmc00g0001491
SyntenyCmc00g0001491
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063492.1 30S ribosomal protein S12-B [Cucumis melo var. makuwa]5.5e-33100Show/hide
Query:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPG
        MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPG
Subjt:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPG
KAF1876942.1 hypothetical protein Lal_00033867 [Lupinus albus]7.7e-3582.83Show/hide
Query:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLEGEGLRIYP
        +EEG RFSNEEKDPMTSKEL +E YEV+IS +VL SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEH VVL   G++  P
Subjt:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLEGEGLRIYP
XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]2.6e-3896.67Show/hide
Query:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
        MEEGRRFSNEEKDPMTSKEL EEPYEV+IS TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
Subjt:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]1.4e-3693.33Show/hide
Query:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
        MEEGRRFSNEEKDPMTSKEL EEPYEV+ISRTVLSSGSKGDLSVNFSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHNLQEHS VL
Subjt:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]2.0e-3888Show/hide
Query:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL-EGEGLRIYP
        MEEGRRFSNEEKDPMTSKEL EEPYEV+ISRTVLSSGSKGDLS+NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE+ VVL  GE ++  P
Subjt:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL-EGEGLRIYP
TrEMBL top hitse value%identityAlignment
A0A3S3NSS0 30S ribosomal protein S12, chloroplastic3.5e-3388.89Show/hide
Query:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
        +EEGRRFSNEEKDP+TSKEL EEPYEV+IS T   S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVL
Subjt:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
A0A443Q5G0 30S ribosomal protein S12, chloroplastic3.5e-3388.89Show/hide
Query:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
        +EEGRRFSNEEKDP+TSKEL EEPYEV+IS T   S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVL
Subjt:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
A0A5A7V5H8 30S ribosomal protein S12-B2.7e-33100Show/hide
Query:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPG
        MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPG
Subjt:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPG
A0A6A5N1Q8 Uncharacterized protein3.7e-3582.83Show/hide
Query:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLEGEGLRIYP
        +EEG RFSNEEKDPMTSKEL +E YEV+IS +VL SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEH VVL   G++  P
Subjt:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLEGEGLRIYP
A0A6J1F0L1 uncharacterized protein LOC1114383941.2e-3896.67Show/hide
Query:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
        MEEGRRFSNEEKDPMTSKEL EEPYEV+IS TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
Subjt:  MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
SwissProt top hitse value%identityAlignment
A4GYN8 30S ribosomal protein S12-B, chloroplastic2.4e-2393.22Show/hide
Query:  TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
        T + SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVL
Subjt:  TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
A4QJD9 30S ribosomal protein S12, chloroplastic3.4e-17100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
A4QJV5 30S ribosomal protein S12-A, chloroplastic3.4e-17100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
A4QJX7 30S ribosomal protein S12-B, chloroplastic4.0e-1886.54Show/hide
Query:  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
        +G  +  +STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
Subjt:  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
Q3V510 30S ribosomal protein S12, chloroplastic3.4e-17100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein1.1e-1048.57Show/hide
Query:  KEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
        +EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL
Subjt:  KEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
ATCG00065.1 ribosomal protein S12A2.4e-18100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
ATCG00905.1 ribosomal protein S12C2.4e-18100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
ATCG01230.1 ribosomal protein S12B2.4e-18100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
ATMG00980.1 Ribosomal protein S12/S23 family protein1.1e-1048.57Show/hide
Query:  KEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL
        +EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL
Subjt:  KEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAAGGAGGAGCCGTATGAGGTTCAAATCTCACGTACGGTTCTGTCGAGTGG
CAGTAAGGGTGACTTATCTGTAAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTG
CTTATATACCAGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAAGGAGGAGCCGTATGAGGTTCAAATCTCACGTACGGTTCTGTCGAGTGG
CAGTAAGGGTGACTTATCTGTAAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTG
CTTATATACCAGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGA
Protein sequenceShow/hide protein sequence
MEEGRRFSNEEKDPMTSKELKEEPYEVQISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLEGEGLRIYPV