CuGenDBv2

Gene ID	Cmc00g0001761
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ribosomal protein S12
Genome location	CMiso1.1chr00:2153056..2153498
RNA-Seq Expression	Cmc00g0001761
Synteny	Cmc00g0001761
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR005679 - Ribosomal protein S12, bacterial-type IPR006032 - Ribosomal protein S12/S23 IPR012340 - Nucleic acid-binding, OB-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AEN56124.1 ribosomal protein S12 [Cucumis melo subsp. melo]

3.4e-64

100

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Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

QNJ89401.1 ribosomal protein S12 [Oenanthe virgata]

1.4e-62

97.6

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Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRASDQCPQKQGVRPR+ TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

XP_023545340.1 uncharacterized protein LOC111804778 [Cucurbita pepo subsp. pepo]

3.7e-63

98.4

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Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRASDQCPQKQGVRPRL+TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

YP_004849331.1 ribosomal protein S12 [Cucumis sativus]

1.7e-63

99.2

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Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

YP_009709935.1 ribosomal protein S12 [Manihot esculenta]

8.3e-63

97.6

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Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRASDQCPQKQGVRPR++TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

TrEMBL top hits

e value

%identity

Alignment

A0A3Q9CRY4 Ribosomal protein S12

1.6e-64

100

Show/hide

Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

A0A7D6BYE6 Ribosomal protein S12

4.0e-63

97.6

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Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRASDQCPQKQGVRPR++TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

G3EIY3 Ribosomal protein S12

8.1e-64

99.2

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Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

G3EU39 Ribosomal protein S12

1.6e-64

100

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Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

W6JLR7 Ribosomal protein S12

4.0e-63

97.6

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Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRASDQCPQKQGVRPR++TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

SwissProt top hits

e value

%identity

Alignment

P27070 Ribosomal protein S12, mitochondrial

7.8e-64

95.2

Show/hide

Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRASDQCPQKQGVRPR+ TRTPKKPNSAPRKIAKVRL+NRHDIF HIPGEGHN QEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

P60096 Ribosomal protein S12, mitochondrial

7.3e-62

93.6

Show/hide

Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRASDQCPQKQGVRPR+ TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEH MVLIRGGRVKDSPGVKSH IRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIP+RRRGRSKYGAE+PKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

P68535 Ribosomal protein S12, mitochondrial

1.3e-63

95.2

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Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MP+ NQLIRHGREEKRRTDRTRA DQCPQKQGV PR++TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

P68536 Ribosomal protein S12, mitochondrial

1.3e-63

95.2

Show/hide

Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MP+ NQLIRHGREEKRRTDRTRA DQCPQKQGV PR++TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

Q95869 Ribosomal protein S12, mitochondrial

2.5e-62

94.4

Show/hide

Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRA DQCPQKQGV PR++TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHSMVLIRGGRVKDSPGVK HCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

Arabidopsis top hits

e value

%identity

Alignment

AT2G07675.1 Ribosomal protein S12/S23 family protein

2.6e-62

Show/hide

Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTFNQLIRHGREEKRRTDRTRA D+CPQK GV PR++TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDL+GIP RRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

ATCG00065.1 ribosomal protein S12A

1.0e-34

57.72

Show/hide

Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT  QLIR+ R+  R   ++ A   CPQ++G   R+ T TPKKPNSA RK+A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATCG00905.1 ribosomal protein S12C

1.0e-34

57.72

Show/hide

Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT  QLIR+ R+  R   ++ A   CPQ++G   R+ T TPKKPNSA RK+A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATCG01230.1 ribosomal protein S12B

1.0e-34

57.72

Show/hide

Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT  QLIR+ R+  R   ++ A   CPQ++G   R+ T TPKKPNSA RK+A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATMG00980.1 Ribosomal protein S12/S23 family protein

2.6e-62

Show/hide

Query:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTFNQLIRHGREEKRRTDRTRA D+CPQK GV PR++TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDL+GIP RRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCCTACATTCAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTCT
TGCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATT
TGCAGGAACATTCTATGGTCTTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCGA
AGAAGAGGCAGATCTAAATATGGTGCAGAAAAACCAAAATCGATATGA

mRNA sequence

Show/hide mRNA sequence

GATGCCTACATTCAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTC
TTGCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAAT
TTGCAGGAACATTCTATGGTCTTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCG
AAGAAGAGGCAGATCTAAATATGGTGCAGAAAAACCAAAATCGATATGAATGGAAGATGCCTCTGGAACTTGTTTTTCTCGTCGAGGGAAGAACCACTCAAAACTCGGAA
TCT

Protein sequence

Show/hide protein sequence

MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDR
RRGRSKYGAEKPKSI

Cmc00g0001761 (gene) of Melon (Charmono) v1.1 genome