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Cmc01g0005341 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0005341
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionextensin-like
Genome locationCMiso1.1chr01:1571305..1571995
RNA-Seq ExpressionCmc01g0005341
SyntenyCmc01g0005341
Gene Ontology termsNA
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576849.1 hypothetical protein SDJN03_24423, partial [Cucurbita argyrosperma subsp. sororia]3.2e-0436.26Show/hide
Query:  MSHSLLLNTLLAAALLLSAAALSPSSAPSPTPPASLSPPWRWTPITKPPPPP----------------PTPSHETKPTPP--------------------
        M+   +LN + AA LL+SAAA SP  +P+P+P    SPPW+WTP T+ P  P                P PS +T  +PP                    
Subjt:  MSHSLLLNTLLAAALLLSAAALSPSSAPSPTPPASLSPPWRWTPITKPPPPP----------------PTPSHETKPTPP--------------------

Query:  ------------PSPTSVPPAPAHFHTPTAPPVSPSPSPSWIAGP--PSEAPSPSKAKSDGFKNRFSVVGSVAFGAMAAALL
                    P+P+ + P PA     +APPVS  P+P+    P  PS AP+  KA + G  NRF++ GSVAFG MAAAL+
Subjt:  ------------PSPTSVPPAPAHFHTPTAPPVSPSPSPSWIAGP--PSEAPSPSKAKSDGFKNRFSVVGSVAFGAMAAALL

KAG7014869.1 hypothetical protein SDJN02_22499, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-0436.26Show/hide
Query:  MSHSLLLNTLLAAALLLSAAALSPSSAPSPTPPASLSPPWRWTPITKPPPPP----------------PTPSHETKPTPP--------------------
        M+   +LN + AA LL+SAAA SP  +P+P+P    SPPW+WTP T+ P  P                P PS +T  +PP                    
Subjt:  MSHSLLLNTLLAAALLLSAAALSPSSAPSPTPPASLSPPWRWTPITKPPPPP----------------PTPSHETKPTPP--------------------

Query:  ------------PSPTSVPPAPAHFHTPTAPPVSPSPSPSWIAGP--PSEAPSPSKAKSDGFKNRFSVVGSVAFGAMAAALL
                    P+P+ + P PA     +APPVS  P+P+    P  PS AP+  KA + G  NRF++ GSVAFG MAAAL+
Subjt:  ------------PSPTSVPPAPAHFHTPTAPPVSPSPSPSWIAGP--PSEAPSPSKAKSDGFKNRFSVVGSVAFGAMAAALL

XP_011659717.1 vegetative cell wall protein gp1 [Cucumis sativus]1.2e-3880.45Show/hide
Query:  MSHSLLLNTLLAAALLLSAAALSPSSAPSPTPPASLSPPWRWTPITKPPPPPPTPSHETKP-TPPPSPTSVPPAPAHFHTPTAPPVSPSPSPSWIAGPPS
        M HSLLLN LLAAALL SAAA+SPS +PSPTPPASLSPPWRW PITKPP  PPTPSHET+P TPPPSPTSVPP   H   PTA P SPSPSP+WIA PPS
Subjt:  MSHSLLLNTLLAAALLLSAAALSPSSAPSPTPPASLSPPWRWTPITKPPPPPPTPSHETKP-TPPPSPTSVPPAPAHFHTPTAPPVSPSPSPSWIAGPPS

Query:  EAPSPSKAKSDGFKNRFSVVGSVAFGAMAAALL
        EA SPSKAKSDGFKN FS+VGSVA GAMAAA L
Subjt:  EAPSPSKAKSDGFKNRFSVVGSVAFGAMAAALL

XP_022141995.1 extensin-like [Momordica charantia]4.7e-1653.69Show/hide
Query:  LAAALLLSAAALSPSSAPSPTPPASLSPPWRWTPITKPPPPP--------PTPSHETKPTPPPSPTS--VPPAPAHFHTPTAPPVSP-------------
        +AAALL SAAA +P  APSP+P A+ SPPWRWTP  KPP PP        P P+  + P P PSPT+  VPPAP     PTA PVSP             
Subjt:  LAAALLLSAAALSPSSAPSPTPPASLSPPWRWTPITKPPPPP--------PTPSHETKPTPPPSPTS--VPPAPAHFHTPTAPPVSP-------------

Query:  ----SPSPSWIAGPPSEAPSPSKAKSDGFKNRFSVVGSVAFGAMAAALL
            +P+PSWIAGPP++A +PSK KS+  KNRFS+VGSV  GAMAAA L
Subjt:  ----SPSPSWIAGPPSEAPSPSKAKSDGFKNRFSVVGSVAFGAMAAALL

XP_038887113.1 anther-specific proline-rich protein APG-like [Benincasa hispida]7.0e-2867.11Show/hide
Query:  MSHSLLLNTLLAAALLLSAAAL---SPSSAPSPTPPASLSPPWRWTPITKPPPPPPTPSHETKPTPP-------PSPTSVPPAPAHFHTPTAPPV-----
        M HS LLN LLAAALL SAAA    +PS AP  TPPAS SPPWRWTPITK PPP  TPSHE+KPTPP       PSPT V P P H H PT  PV     
Subjt:  MSHSLLLNTLLAAALLLSAAAL---SPSSAPSPTPPASLSPPWRWTPITKPPPPPPTPSHETKPTPP-------PSPTSVPPAPAHFHTPTAPPV-----

Query:  -----SPSPSPSWIAGPPSEAPSPSKAKSDGFKNRFSVVGSVAFGAMAAALL
             SPSPSPSWIA PP EAP+PSKAKSD F NRFSVV SVA  AMAAALL
Subjt:  -----SPSPSPSWIAGPPSEAPSPSKAKSDGFKNRFSVVGSVAFGAMAAALL

TrEMBL top hitse value%identityAlignment
A0A0A0K238 Uncharacterized protein5.6e-3980.45Show/hide
Query:  MSHSLLLNTLLAAALLLSAAALSPSSAPSPTPPASLSPPWRWTPITKPPPPPPTPSHETKP-TPPPSPTSVPPAPAHFHTPTAPPVSPSPSPSWIAGPPS
        M HSLLLN LLAAALL SAAA+SPS +PSPTPPASLSPPWRW PITKPP  PPTPSHET+P TPPPSPTSVPP   H   PTA P SPSPSP+WIA PPS
Subjt:  MSHSLLLNTLLAAALLLSAAALSPSSAPSPTPPASLSPPWRWTPITKPPPPPPTPSHETKP-TPPPSPTSVPPAPAHFHTPTAPPVSPSPSPSWIAGPPS

Query:  EAPSPSKAKSDGFKNRFSVVGSVAFGAMAAALL
        EA SPSKAKSDGFKN FS+VGSVA GAMAAA L
Subjt:  EAPSPSKAKSDGFKNRFSVVGSVAFGAMAAALL

A0A6J1CJN4 extensin-like2.3e-1653.69Show/hide
Query:  LAAALLLSAAALSPSSAPSPTPPASLSPPWRWTPITKPPPPP--------PTPSHETKPTPPPSPTS--VPPAPAHFHTPTAPPVSP-------------
        +AAALL SAAA +P  APSP+P A+ SPPWRWTP  KPP PP        P P+  + P P PSPT+  VPPAP     PTA PVSP             
Subjt:  LAAALLLSAAALSPSSAPSPTPPASLSPPWRWTPITKPPPPP--------PTPSHETKPTPPPSPTS--VPPAPAHFHTPTAPPVSP-------------

Query:  ----SPSPSWIAGPPSEAPSPSKAKSDGFKNRFSVVGSVAFGAMAAALL
            +P+PSWIAGPP++A +PSK KS+  KNRFS+VGSV  GAMAAA L
Subjt:  ----SPSPSWIAGPPSEAPSPSKAKSDGFKNRFSVVGSVAFGAMAAALL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCACTCTCTCCTTCTCAACACCCTCTTAGCGGCGGCGCTGCTTCTCTCCGCCGCTGCCCTGTCCCCATCATCGGCTCCGTCGCCCACTCCTCCGGCCTCC
CTTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGCCTCCTCCTCCACCACCAACGCCGTCCCATGAAACCAAGCCCACTCCACCGCCCTCGCCTACTTCAGTT
CCCCCGGCGCCGGCCCATTTCCATACACCAACTGCACCACCAGTTTCCCCTTCTCCGTCTCCGTCGTGGATTGCCGGACCCCCTTCGGAAGCACCGTCGCCGTCG
AAAGCAAAGAGCGATGGGTTTAAGAACAGATTCTCGGTGGTGGGATCGGTGGCTTTTGGAGCCATGGCTGCTGCTTTGCTTTAA
mRNA sequenceShow/hide mRNA sequence
TGTATGGAAAACTTTGAGACTAATTACCAAATTTATATATATTACCAAAAATTAAGAATAATAATTTCAATTCTCTCAAACCTTTTCCTATTTATATTGATATTC
TCTTCTTAATTTCTCCATCTCCAAAGACCCTTTTCGTAAACAAAACCAATCCCTTTCTCTCAACTACAATGTCTCACTCTCTCCTTCTCAACACCCTCTTAGCGG
CGGCGCTGCTTCTCTCCGCCGCTGCCCTGTCCCCATCATCGGCTCCGTCGCCCACTCCTCCGGCCTCCCTTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGC
CTCCTCCTCCACCACCAACGCCGTCCCATGAAACCAAGCCCACTCCACCGCCCTCGCCTACTTCAGTTCCCCCGGCGCCGGCCCATTTCCATACACCAACTGCAC
CACCAGTTTCCCCTTCTCCGTCTCCGTCGTGGATTGCCGGACCCCCTTCGGAAGCACCGTCGCCGTCGAAAGCAAAGAGCGATGGGTTTAAGAACAGATTCTCGG
TGGTGGGATCGGTGGCTTTTGGAGCCATGGCTGCTGCTTTGCTTTAACGGTTTATTATTAATTTACAATTTATTTTAGTTTAGAGTTTATTTTGTTTAAATGTAT
TATCATTTCAATGTTTGAATTCAAATTGTTCTTGATTTTACATTATTTTGTTAATTTGATC
Protein sequenceShow/hide protein sequence
MSHSLLLNTLLAAALLLSAAALSPSSAPSPTPPASLSPPWRWTPITKPPPPPPTPSHETKPTPPPSPTSVPPAPAHFHTPTAPPVSPSPSPSWIAGPPSEAPSPS
KAKSDGFKNRFSVVGSVAFGAMAAALL