; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0010141 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0010141
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr01:4835347..4835823
RNA-Seq ExpressionCmc01g0010141
SyntenyCmc01g0010141
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054623.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.6e-6177.85Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA
        M SEFEMS+VGELSCFLGLQIKQRSEG+F+SQEKYAKN+VKKF L+QS++KRT AATH KITKDT GT V+HKLYRSMI S LYL ASRPDIAY V ICA
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA

Query:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT
         +QSDPCTSHL  V+RI+KYVHGT+ F ILYSYDT S LVGYCDADWA    DRKST+
Subjt:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT

KAA0068014.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]6.2e-6380.38Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA
        MKSEFEMSMVGELSCFLGLQIKQ+SE IFISQEKY KNIVKKF LEQSRHKRT A T VKITKDTNG   +HKLYRS+IESLL+L ASRPDIAY VGIC 
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA

Query:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT
         +Q+DP  SHLE V+RILKYVHGTS F ILYSYDTTSILVGYCDADWA    DRK+T+
Subjt:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT

TYK18114.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]6.2e-6380.38Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA
        MKSEFEMSMVGELSCFLGLQIKQ+SE IFISQEKY KNIVKKF LEQSRHKRT A T VKITKDTNG   +HKLYRS+IESLL+L ASRPDIAY VGIC 
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA

Query:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT
         +Q+DP  SHLE V+RILKYVHGTS F ILYSYDTTSILVGYCDADWA    DRK+T+
Subjt:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT

TYK29824.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]3.4e-6179.11Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA
        MKSEFEMSMVGELSCFLGLQIKQRS  IFISQEKY KN+VKKF L+Q +HKRTS ATHVK+TKD NGT+V+HKLYRS++ SLLYL+AS+ DIAY VGICA
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA

Query:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT
         FQSDP TSHL VV+RILKYVHGTS F ILYS+DTTS LVGYCDADWA    DRKST+
Subjt:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT

XP_016901935.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]7.6e-6177.85Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA
        M SEFEMS+VGELSCFLGLQIKQRSEG+F+SQEKYAKN+VKKF L+QS++KRT AATH KITKDT GT V+HKLYRSMI S LYL ASRPDIAY V ICA
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA

Query:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT
         +QSDPCTSHL  V+RI+KYVHGT+ F ILYSYDT S LVGYCDADWA    DRKST+
Subjt:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT

TrEMBL top hitse value%identityAlignment
A0A1S4E1S5 uncharacterized mitochondrial protein AtMg00810-like3.7e-6177.85Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA
        M SEFEMS+VGELSCFLGLQIKQRSEG+F+SQEKYAKN+VKKF L+QS++KRT AATH KITKDT GT V+HKLYRSMI S LYL ASRPDIAY V ICA
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA

Query:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT
         +QSDPCTSHL  V+RI+KYVHGT+ F ILYSYDT S LVGYCDADWA    DRKST+
Subjt:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT

A0A5A7UF87 Putative mitochondrial protein3.7e-6177.85Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA
        M SEFEMS+VGELSCFLGLQIKQRSEG+F+SQEKYAKN+VKKF L+QS++KRT AATH KITKDT GT V+HKLYRSMI S LYL ASRPDIAY V ICA
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA

Query:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT
         +QSDPCTSHL  V+RI+KYVHGT+ F ILYSYDT S LVGYCDADWA    DRKST+
Subjt:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT

A0A5A7VKR7 Putative gag-pol polyprotein3.0e-6380.38Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA
        MKSEFEMSMVGELSCFLGLQIKQ+SE IFISQEKY KNIVKKF LEQSRHKRT A T VKITKDTNG   +HKLYRS+IESLL+L ASRPDIAY VGIC 
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA

Query:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT
         +Q+DP  SHLE V+RILKYVHGTS F ILYSYDTTSILVGYCDADWA    DRK+T+
Subjt:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT

A0A5D3D3G3 Putative gag-pol polyprotein3.0e-6380.38Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA
        MKSEFEMSMVGELSCFLGLQIKQ+SE IFISQEKY KNIVKKF LEQSRHKRT A T VKITKDTNG   +HKLYRS+IESLL+L ASRPDIAY VGIC 
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA

Query:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT
         +Q+DP  SHLE V+RILKYVHGTS F ILYSYDTTSILVGYCDADWA    DRK+T+
Subjt:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT

A0A5D3E1T0 Putative gag-pol polyprotein1.6e-6179.11Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA
        MKSEFEMSMVGELSCFLGLQIKQRS  IFISQEKY KN+VKKF L+Q +HKRTS ATHVK+TKD NGT+V+HKLYRS++ SLLYL+AS+ DIAY VGICA
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA

Query:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT
         FQSDP TSHL VV+RILKYVHGTS F ILYS+DTTS LVGYCDADWA    DRKST+
Subjt:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT

SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1611.0e-1238.82Show/hide
Query:  YRSMIESLLYL-IASRPDIAYPVGICALFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT
        Y S + +++YL + +RPD+A  VG+ + F SDPC +H + ++R+L+Y+  T  + + ++   T+ LVGY DADWA     R+ST+
Subjt:  YRSMIESLLYL-IASRPDIAYPVGICALFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.8e-1834.13Show/hide
Query:  MKSEFEMSMVGELSCFLGLQI--KQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHK------LYRSMIESLLY-LIASRPD
        +   F+M  +G     LG++I  ++ S  +++SQEKY + ++++F ++ ++   T  A H+K++K    T V  K       Y S + SL+Y ++ +RPD
Subjt:  MKSEFEMSMVGELSCFLGLQI--KQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHK------LYRSMIESLLY-LIASRPD

Query:  IAYPVGICALFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT
        IA+ VG+ + F  +P   H E V+ IL+Y+ GT+G + L    +  IL GY DAD A    +RKS+T
Subjt:  IAYPVGICALFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT

P92519 Uncharacterized mitochondrial protein AtMg008103.5e-1632.7Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA
        + S F M  +G +  FLG+QIK    G+F+SQ KYA+ I+    +   +   T     +  +  T     +   +RS++ +L YL  +RPDI+Y V I  
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA

Query:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILV-GYCDADWANIFYDRKSTT
            +P  +  ++++R+L+YV GT  F  LY +  + + V  +CD+DWA     R+STT
Subjt:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILV-GYCDADWANIFYDRKSTT

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.5e-1430.57Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA
        +   F +    EL  FLG++ K+   G+ +SQ +Y  +++ +  +  ++   T  A   K++  +   + +   YR ++ SL YL  +RPDI+Y V   +
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA

Query:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKST
         F   P   HL+ ++RIL+Y+ GT    I      T  L  Y DADWA    D  ST
Subjt:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKST

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.2e-1428.66Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA
        +   F +    +L  FLG++ K+  +G+ +SQ +Y  +++ +  +  ++   T  AT  K+T  +   + +   YR ++ SL YL  +RPD++Y V   +
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA

Query:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKST
         +   P   H   ++R+L+Y+ GT    I      T  L  Y DADWA    D  ST
Subjt:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKST

Arabidopsis top hitse value%identityAlignment
ATMG00810.1 DNA/RNA polymerases superfamily protein2.5e-1732.7Show/hide
Query:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA
        + S F M  +G +  FLG+QIK    G+F+SQ KYA+ I+    +   +   T     +  +  T     +   +RS++ +L YL  +RPDI+Y V I  
Subjt:  MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICA

Query:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILV-GYCDADWANIFYDRKSTT
            +P  +  ++++R+L+YV GT  F  LY +  + + V  +CD+DWA     R+STT
Subjt:  LFQSDPCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILV-GYCDADWANIFYDRKSTT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCAGAATTTGAGATGAGTATGGTGGGAGAATTATCTTGTTTTCTCGGCCTACAAATCAAACAAAGAAGTGAGGGTATATTCATATCTCAAGAAAAGTAT
GCCAAGAACATAGTTAAAAAATTCAGGTTAGAGCAGTCTCGACACAAAAGGACTTCAGCTGCGACACATGTTAAAATTACCAAAGATACTAATGGTACAATAGTA
AATCACAAGCTTTACAGAAGCATGATCGAAAGTCTGTTATATCTAATTGCCAGTCGGCCTGACATTGCTTATCCTGTTGGGATATGTGCTCTTTTTCAGTCCGAT
CCTTGTACTTCACATTTAGAAGTTGTTCAAAGGATCCTCAAGTATGTCCATGGAACAAGTGGTTTTGAAATTCTGTATTCCTATGATACGACTTCTATCTTAGTT
GGATATTGTGATGCCGATTGGGCAAACATTTTTTATGACAGGAAAAGCACTACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATCAGAATTTGAGATGAGTATGGTGGGAGAATTATCTTGTTTTCTCGGCCTACAAATCAAACAAAGAAGTGAGGGTATATTCATATCTCAAGAAAAGTAT
GCCAAGAACATAGTTAAAAAATTCAGGTTAGAGCAGTCTCGACACAAAAGGACTTCAGCTGCGACACATGTTAAAATTACCAAAGATACTAATGGTACAATAGTA
AATCACAAGCTTTACAGAAGCATGATCGAAAGTCTGTTATATCTAATTGCCAGTCGGCCTGACATTGCTTATCCTGTTGGGATATGTGCTCTTTTTCAGTCCGAT
CCTTGTACTTCACATTTAGAAGTTGTTCAAAGGATCCTCAAGTATGTCCATGGAACAAGTGGTTTTGAAATTCTGTATTCCTATGATACGACTTCTATCTTAGTT
GGATATTGTGATGCCGATTGGGCAAACATTTTTTATGACAGGAAAAGCACTACTTGA
Protein sequenceShow/hide protein sequence
MKSEFEMSMVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFRLEQSRHKRTSAATHVKITKDTNGTIVNHKLYRSMIESLLYLIASRPDIAYPVGICALFQSD
PCTSHLEVVQRILKYVHGTSGFEILYSYDTTSILVGYCDADWANIFYDRKSTT