; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0010251 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0010251
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr01:5039222..5040013
RNA-Seq ExpressionCmc01g0010251
SyntenyCmc01g0010251
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]9.4e-14195.44Show/hide
Query:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH
        MDLRFQDYMIEHGIQSQLSA GTPQQNGVSE RN+TLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSET FELWRGRKPSLSHFRIWGCPAH
Subjt:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH

Query:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM
        VLVTNPKKLEPRSRLCQFVGYPKETRG LFFDPQENRVFVSTN TFLEEDHMR+HKPRSKLVL+EATDESTRVVDEVG SSRVDETTTSGQSHPSQSLRM
Subjt:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM

Query:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
        PRRSGR+VSQPNRYLGLTETQV IPDDGVED LSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
Subjt:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]2.3e-13994.68Show/hide
Query:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH
        MDL FQDYMIEHGIQSQLSA GTPQQNGVSE RN+TLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSET FELWRGRKPSLSHFRIWGCPAH
Subjt:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH

Query:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM
        VLVTNPKKLEPRSRLCQFVGYPKETRG LFFDP+ENRVFVSTN TFLEEDHMR+HKPRSKLVL+EATDESTRVVDEVG SSRVDETTTSGQSHPSQSLRM
Subjt:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM

Query:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
        PRRSGR+VSQPNRYLGLTETQV IPDDGVED LSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
Subjt:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]9.4e-14195.44Show/hide
Query:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH
        MDLRFQDYMIEHGIQSQLSA GTPQQNGVSE RN+TLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSET FELWRGRKPSLSHFRIWGCPAH
Subjt:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH

Query:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM
        VLVTNPKKLEPRSRLCQFVGYPKETRG LFFDPQENRVFVSTN TFLEEDHMR+HKPRSKLVL+EATDESTRVVDEVG SSRVDETTTSGQSHPSQSLRM
Subjt:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM

Query:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
        PRRSGR+VSQPNRYLGLTETQV IPDDGVED LSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
Subjt:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV

TYK02840.1 gag/pol protein [Cucumis melo var. makuwa]9.4e-14195.44Show/hide
Query:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH
        MDLRFQDYMIEHGIQSQLSA GTPQQNGVSE RN+TLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSET FELWRGRKPSLSHFRIWGCPAH
Subjt:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH

Query:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM
        VLVTNPKKLEPRSRLCQFVGYPKETRG LFFDPQENRVFVSTN TFLEEDHMR+HKPRSKLVL+EATDESTRVVDEVG SSRVDETTTSGQSHPSQSLRM
Subjt:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM

Query:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
        PRRSGR+VSQPNRYLGLTETQV IPDDGVED LSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
Subjt:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV

TYK15984.1 gag/pol protein [Cucumis melo var. makuwa]5.2e-13994.3Show/hide
Query:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH
        MDLRFQDYMIEHGIQSQLSA GTPQQNGVSE RN+TLLDMV SMMSYAQLPSSFWGYAVETAVHILNNVPSKSVS+  FELWRGRKPSLSHFRIWGCPAH
Subjt:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH

Query:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM
        VLVTNPKKLEPRSRLCQFVGYPKETRG LFFDPQENRVFVSTN TFLEEDHMR+HKPRSKLVL+EATDESTRVVDEVG SSRVDETTTSGQSHPSQSLRM
Subjt:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM

Query:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
        PRRSGR+VSQPNRYLGLTETQV IPDDGVED LSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
Subjt:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV

TrEMBL top hitse value%identityAlignment
A0A5A7T2V9 Gag/pol protein1.1e-13994.68Show/hide
Query:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH
        MDL FQDYMIEHGIQSQLSA GTPQQNGVSE RN+TLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSET FELWRGRKPSLSHFRIWGCPAH
Subjt:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH

Query:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM
        VLVTNPKKLEPRSRLCQFVGYPKETRG LFFDP+ENRVFVSTN TFLEEDHMR+HKPRSKLVL+EATDESTRVVDEVG SSRVDETTTSGQSHPSQSLRM
Subjt:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM

Query:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
        PRRSGR+VSQPNRYLGLTETQV IPDDGVED LSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
Subjt:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV

A0A5A7TZD0 Gag/pol protein4.6e-14195.44Show/hide
Query:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH
        MDLRFQDYMIEHGIQSQLSA GTPQQNGVSE RN+TLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSET FELWRGRKPSLSHFRIWGCPAH
Subjt:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH

Query:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM
        VLVTNPKKLEPRSRLCQFVGYPKETRG LFFDPQENRVFVSTN TFLEEDHMR+HKPRSKLVL+EATDESTRVVDEVG SSRVDETTTSGQSHPSQSLRM
Subjt:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM

Query:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
        PRRSGR+VSQPNRYLGLTETQV IPDDGVED LSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
Subjt:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV

A0A5A7UYE8 Gag/pol protein4.6e-14195.44Show/hide
Query:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH
        MDLRFQDYMIEHGIQSQLSA GTPQQNGVSE RN+TLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSET FELWRGRKPSLSHFRIWGCPAH
Subjt:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH

Query:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM
        VLVTNPKKLEPRSRLCQFVGYPKETRG LFFDPQENRVFVSTN TFLEEDHMR+HKPRSKLVL+EATDESTRVVDEVG SSRVDETTTSGQSHPSQSLRM
Subjt:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM

Query:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
        PRRSGR+VSQPNRYLGLTETQV IPDDGVED LSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
Subjt:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV

A0A5D3BUN8 Gag/pol protein4.6e-14195.44Show/hide
Query:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH
        MDLRFQDYMIEHGIQSQLSA GTPQQNGVSE RN+TLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSET FELWRGRKPSLSHFRIWGCPAH
Subjt:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH

Query:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM
        VLVTNPKKLEPRSRLCQFVGYPKETRG LFFDPQENRVFVSTN TFLEEDHMR+HKPRSKLVL+EATDESTRVVDEVG SSRVDETTTSGQSHPSQSLRM
Subjt:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM

Query:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
        PRRSGR+VSQPNRYLGLTETQV IPDDGVED LSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
Subjt:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV

A0A5D3CYF4 Gag/pol protein2.5e-13994.3Show/hide
Query:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH
        MDLRFQDYMIEHGIQSQLSA GTPQQNGVSE RN+TLLDMV SMMSYAQLPSSFWGYAVETAVHILNNVPSKSVS+  FELWRGRKPSLSHFRIWGCPAH
Subjt:  MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAH

Query:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM
        VLVTNPKKLEPRSRLCQFVGYPKETRG LFFDPQENRVFVSTN TFLEEDHMR+HKPRSKLVL+EATDESTRVVDEVG SSRVDETTTSGQSHPSQSLRM
Subjt:  VLVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRM

Query:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
        PRRSGR+VSQPNRYLGLTETQV IPDDGVED LSYKQAMNDVDKDQWVKAMDLEMESMYFNSV
Subjt:  PRRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV

SwissProt top hitse value%identityAlignment
P04146 Copia protein6.6e-2032.54Show/hide
Query:  QDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSV---SETLFELWRGRKPSLSHFRIWGCPAHVL
        + + ++ GI   L+   TPQ NGVSE   +T+ +  R+M+S A+L  SFWG AV TA +++N +PS+++   S+T +E+W  +KP L H R++G   +V 
Subjt:  QDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSV---SETLFELWRGRKPSLSHFRIWGCPAHVL

Query:  VTNPK-KLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDES
        + N + K + +S    FVGY  E  G   +D    +  V+ +V   E + +     + + V  + + ES
Subjt:  VTNPK-KLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDES

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.1e-3032.87Show/hide
Query:  FQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFE-LWRGRKPSLSHFRIWGCP--AHV
        F++Y   HGI+ + +  GTPQ NGV+E  N+T+++ VRSM+  A+LP SFWG AV+TA +++N  PS  ++  + E +W  ++ S SH +++GC   AHV
Subjt:  FQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFE-LWRGRKPSLSHFRIWGCP--AHV

Query:  LVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHM----RDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQ------
              KL+ +S  C F+GY  E  G   +DP + +V  S +V F E +         K ++ ++ N  T  ST   +     S  DE +  G+      
Subjt:  LVTNPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHM----RDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQ------

Query:  -------------SHPSQSLRMP---RRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFN
                      HP+Q        RRS R   +  RY   +   V I DD   +SL  K+ ++  +K+Q +KAM  EMES+  N
Subjt:  -------------SHPSQSLRMP---RRSGRIVSQPNRYLGLTETQVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFN

P92512 Uncharacterized mitochondrial protein AtMg007101.3e-0736.59Show/hide
Query:  NKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVS-ETLFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSR
        N+T+++ VRSM+    LP +F   A  TAVHI+N  PS +++     E+W    P+ S+ R +GC A++   +  KL+PR++
Subjt:  NKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVS-ETLFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSR

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.4e-1730.34Show/hide
Query:  DYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVS-ETLFELWRGRKPSLSHFRIWGCPAHVLVT-
        +Y  +HGI    S   TP+ NG+SE +++ +++   +++S+A +P ++W YA   AV+++N +P+  +  E+ F+   G  P+    R++GC  +  +  
Subjt:  DYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVS-ETLFELWRGRKPSLSHFRIWGCPAHVLVT-

Query:  -NPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLE
         N  KL+ +SR C F+GY       L    Q +R+++S +V F E
Subjt:  -NPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLE

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.0e-1729.45Show/hide
Query:  QDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVS-ETLFELWRGRKPSLSHFRIWGCPAHVLVT
        +DY+ +HGI    S   TP+ NG+SE +++ +++M  +++S+A +P ++W YA   AV+++N +P+  +  ++ F+   G+ P+    +++GC  +  + 
Subjt:  QDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVS-ETLFELWRGRKPSLSHFRIWGCPAHVLVT

Query:  --NPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLE
          N  KLE +S+ C F+GY       L       R++ S +V F E
Subjt:  --NPKKLEPRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLE

Arabidopsis top hitse value%identityAlignment
ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.1e-0936.59Show/hide
Query:  NKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVS-ETLFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSR
        N+T+++ VRSM+    LP +F   A  TAVHI+N  PS +++     E+W    P+ S+ R +GC A++   +  KL+PR++
Subjt:  NKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVS-ETLFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGAGATTCCAGGACTATATGATAGAACATGGAATCCAATCCCAACTCTCAGCATCTGGTACACCTCAACAAAATGGTGTATCAGAAACGAGAAATAAAACCTT
GTTAGACATGGTTCGTTCAATGATGAGTTACGCTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTCGAAGAGTG
TTTCTGAAACACTTTTCGAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCATTTCAGAATTTGGGGTTGCCCAGCACACGTGTTAGTGACAAATCCCAAGAAGTTGGAA
CCTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGACGAGAGGTAGTCTATTCTTCGATCCACAAGAAAATAGAGTGTTTGTATCGACAAATGTTACTTTCTT
AGAAGAAGACCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGAATCAACAAGGGTTGTTGATGAAGTTGGTCTCTCATCAAGAGTTG
ATGAAACCACCACATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATGCCTCGACGCAGTGGGAGGATTGTATCACAACCTAACCGTTATTTGGGTTTAACTGAAACT
CAGGTTTTCATACCAGATGATGGTGTTGAGGATTCATTGTCCTATAAACAGGCAATGAATGATGTAGATAAGGACCAATGGGTCAAAGCTATGGACCTTGAAATGGAGTC
TATGTACTTCAATTCAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTGAGATTCCAGGACTATATGATAGAACATGGAATCCAATCCCAACTCTCAGCATCTGGTACACCTCAACAAAATGGTGTATCAGAAACGAGAAATAAAACCTT
GTTAGACATGGTTCGTTCAATGATGAGTTACGCTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTCGAAGAGTG
TTTCTGAAACACTTTTCGAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCATTTCAGAATTTGGGGTTGCCCAGCACACGTGTTAGTGACAAATCCCAAGAAGTTGGAA
CCTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGACGAGAGGTAGTCTATTCTTCGATCCACAAGAAAATAGAGTGTTTGTATCGACAAATGTTACTTTCTT
AGAAGAAGACCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGAATCAACAAGGGTTGTTGATGAAGTTGGTCTCTCATCAAGAGTTG
ATGAAACCACCACATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATGCCTCGACGCAGTGGGAGGATTGTATCACAACCTAACCGTTATTTGGGTTTAACTGAAACT
CAGGTTTTCATACCAGATGATGGTGTTGAGGATTCATTGTCCTATAAACAGGCAATGAATGATGTAGATAAGGACCAATGGGTCAAAGCTATGGACCTTGAAATGGAGTC
TATGTACTTCAATTCAGTGTGA
Protein sequenceShow/hide protein sequence
MDLRFQDYMIEHGIQSQLSASGTPQQNGVSETRNKTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETLFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLE
PRSRLCQFVGYPKETRGSLFFDPQENRVFVSTNVTFLEEDHMRDHKPRSKLVLNEATDESTRVVDEVGLSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTET
QVFIPDDGVEDSLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV