CuGenDBv2

Gene ID	Cmc01g0010531
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr01:5532789..5534474
RNA-Seq Expression	Cmc01g0010531
Synteny	Cmc01g0010531
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR041588 - Integrase zinc-binding domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040689.1 pol protein [Cucumis melo var. makuwa]

1.1e-259

84.29

Show/hide

Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKKKDGSMRLCIDYRELNKV VKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLK VSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG

Query:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL
        VSVDPVKIEAVT WTRPSTVSEVR FLGLA                        APFVWSKACEDSFQNLKQKLV APVL VPDGSGSFVIYSDASKKGL
Subjt:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV----------------------------------------------DYDCEILYHPGKANVVADA
        GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV                                              DYDCEILYHPGKANVVADA
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV----------------------------------------------DYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKT
        LSRKVSHSAALITRQAPLHRDLE+AEIAVSVGAVT+QLAQLTVQPTLRQRIIDAQSND YLVEKRGLAEAGQAV FSISS+GGL+FERRLCVPSDSA+KT
Subjt:  LSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKT

Query:  ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGL
        ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGL
Subjt:  ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGL

KAA0047433.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.1e-265

90.63

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKV VKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLK VSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG

Query:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL
        VSVDP KIEAVT WTRPSTVSEVR FLGLA                        APFVWSKACEDSFQNLKQKLV APVLTVPDGSGSFVIYSDASKKGL
Subjt:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV--------DYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQL
        GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV        DYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLE+AEIAVSVG VT+QL
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV--------DYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQL

Query:  AQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA
        AQLTVQPTLRQRIIDAQ ND YLVEKRGLAEAGQAV FSISS+GGL+FERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA
Subjt:  AQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA

Query:  EFVSRCLVCQQVKAPRQKPAGLL
        +FVSRCLVCQQVKAPRQKPAGLL
Subjt:  EFVSRCLVCQQVKAPRQKPAGLL

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

2.4e-259

83.96

Show/hide

Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKV VKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLK VSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG

Query:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL
        VSVDP KIEAVT WTRPSTVSEVR FLGLA                        APFVWSKACEDSFQNLKQKLV APVLTVPDGSGSFVIYSDASKKGL
Subjt:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV----------------------------------------------DYDCEILYHPGKANVVADA
        GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV                                              DYDCEILYHPGKANVVADA
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV----------------------------------------------DYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKT
        LSRKVSHSAALITRQAPLHRDLE+AEIAVSVGAVT+QLAQLTVQPTLRQRIIDAQSND YLVEKRGLAEAGQAV FS+SS+GGL+FERRLCVPSDS VKT
Subjt:  LSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKT

Query:  ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL
        ELLSEAHSSPFSMHPGSTKMY+D+KRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL
Subjt:  ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL

KAA0053368.1 pol protein [Cucumis melo var. makuwa]

2.4e-259

84.14

Show/hide

Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKV VKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLK VSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG

Query:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL
        VSVDP KIEAVT WTRPSTVSEVR FLGLA                        APFVWSKACEDSFQNLKQKLV AP+LTVPDGSGSFVIYSDASKKGL
Subjt:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV----------------------------------------------DYDCEILYHPGKANVVADA
        GCVLMQQ KVVAYASRQLKSHEQNYPTHDLELAAV                                              DYDCEILYHPGKANVVADA
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV----------------------------------------------DYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKT
        LSRKVSHSAALITRQAPLHRDLE+AEIAVSVGAVT+QLAQLTVQ TLRQRII AQSND YLVEKRGLAEAGQA GFSISS+GGL FERRLCVPSDS +KT
Subjt:  LSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKT

Query:  ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL
        ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL
Subjt:  ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL

KAA0062245.1 pol protein [Cucumis melo var. makuwa]

3.1e-262

89.48

Show/hide

Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKV VKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLK VSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG

Query:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL
        VSVDP KIEAVT WTRPST+SEVR FLGLA                        APFVWSKACEDSFQNLKQKLV APVLTVPDGSGSFVIYSDA KKGL
Subjt:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV--------DYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQL
        GCVLMQQGKVV YASRQLKSHEQNYPTHDLELAAV        DYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLE+AEIAVSVGAVT+QL
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV--------DYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQL

Query:  AQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA
        AQLTVQPTLRQRIIDAQSND YLVEKRGLAEAGQA  FS+SS+GGL+FERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA
Subjt:  AQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA

Query:  EFVSRCLVCQQVKAPRQKPAGLL
        EFVS+CLVCQQVKAP QKPAGLL
Subjt:  EFVSRCLVCQQVKAPRQKPAGLL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7THE6 Reverse transcriptase

5.3e-260

84.29

Show/hide

Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKKKDGSMRLCIDYRELNKV VKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLK VSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG

Query:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL
        VSVDPVKIEAVT WTRPSTVSEVR FLGLA                        APFVWSKACEDSFQNLKQKLV APVL VPDGSGSFVIYSDASKKGL
Subjt:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV----------------------------------------------DYDCEILYHPGKANVVADA
        GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV                                              DYDCEILYHPGKANVVADA
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV----------------------------------------------DYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKT
        LSRKVSHSAALITRQAPLHRDLE+AEIAVSVGAVT+QLAQLTVQPTLRQRIIDAQSND YLVEKRGLAEAGQAV FSISS+GGL+FERRLCVPSDSA+KT
Subjt:  LSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKT

Query:  ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGL
        ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGL
Subjt:  ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGL

A0A5A7TV57 Ty3-gypsy retrotransposon protein

2.5e-265

90.63

Show/hide

Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKV VKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLK VSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG

Query:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL
        VSVDP KIEAVT WTRPSTVSEVR FLGLA                        APFVWSKACEDSFQNLKQKLV APVLTVPDGSGSFVIYSDASKKGL
Subjt:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV--------DYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQL
        GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV        DYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLE+AEIAVSVG VT+QL
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV--------DYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQL

Query:  AQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA
        AQLTVQPTLRQRIIDAQ ND YLVEKRGLAEAGQAV FSISS+GGL+FERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA
Subjt:  AQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA

Query:  EFVSRCLVCQQVKAPRQKPAGLL
        +FVSRCLVCQQVKAPRQKPAGLL
Subjt:  EFVSRCLVCQQVKAPRQKPAGLL

A0A5A7U330 Reverse transcriptase

1.2e-259

83.96

Show/hide

Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKV VKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLK VSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG

Query:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL
        VSVDP KIEAVT WTRPSTVSEVR FLGLA                        APFVWSKACEDSFQNLKQKLV APVLTVPDGSGSFVIYSDASKKGL
Subjt:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV----------------------------------------------DYDCEILYHPGKANVVADA
        GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV                                              DYDCEILYHPGKANVVADA
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV----------------------------------------------DYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKT
        LSRKVSHSAALITRQAPLHRDLE+AEIAVSVGAVT+QLAQLTVQPTLRQRIIDAQSND YLVEKRGLAEAGQAV FS+SS+GGL+FERRLCVPSDS VKT
Subjt:  LSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKT

Query:  ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL
        ELLSEAHSSPFSMHPGSTKMY+D+KRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL
Subjt:  ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL

A0A5A7UE75 Reverse transcriptase

1.2e-259

84.14

Show/hide

Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKV VKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLK VSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG

Query:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL
        VSVDP KIEAVT WTRPSTVSEVR FLGLA                        APFVWSKACEDSFQNLKQKLV AP+LTVPDGSGSFVIYSDASKKGL
Subjt:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV----------------------------------------------DYDCEILYHPGKANVVADA
        GCVLMQQ KVVAYASRQLKSHEQNYPTHDLELAAV                                              DYDCEILYHPGKANVVADA
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV----------------------------------------------DYDCEILYHPGKANVVADA

Query:  LSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKT
        LSRKVSHSAALITRQAPLHRDLE+AEIAVSVGAVT+QLAQLTVQ TLRQRII AQSND YLVEKRGLAEAGQA GFSISS+GGL FERRLCVPSDS +KT
Subjt:  LSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKT

Query:  ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL
        ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL
Subjt:  ELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL

A0A5A7V8L8 Pol protein

1.5e-262

89.48

Show/hide

Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKV VKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNKLYAKFSKCEFWLK VSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG

Query:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL
        VSVDP KIEAVT WTRPST+SEVR FLGLA                        APFVWSKACEDSFQNLKQKLV APVLTVPDGSGSFVIYSDA KKGL
Subjt:  VSVDPVKIEAVTSWTRPSTVSEVRRFLGLA------------------------APFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV--------DYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQL
        GCVLMQQGKVV YASRQLKSHEQNYPTHDLELAAV        DYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLE+AEIAVSVGAVT+QL
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAV--------DYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQL

Query:  AQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA
        AQLTVQPTLRQRIIDAQSND YLVEKRGLAEAGQA  FS+SS+GGL+FERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA
Subjt:  AQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA

Query:  EFVSRCLVCQQVKAPRQKPAGLL
        EFVS+CLVCQQVKAP QKPAGLL
Subjt:  EFVSRCLVCQQVKAPRQKPAGLL

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

7.8e-67

28.15

Show/hide

Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK +  N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG
         AFR   G +E++VM +G++ A A F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF    V F+G+ +S+ G
Subjt:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG

Query:  VSVDPVKIEAVTSWTRPSTVSEVRRFLG--------------LAAP----------FVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL
         +     I+ V  W +P    E+R+FLG              L  P          + W+     + +N+KQ LV+ PVL   D S   ++ +DAS   +
Subjt:  VSVDPVKIEAVTSWTRPSTVSEVRRFLG--------------LAAP----------FVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAV--------------------------------------------------DYDCEILYHP
        G VL Q+        V Y S ++   + NY   D E+ A+                                                  D++ EI Y P
Subjt:  GCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAV--------------------------------------------------DYDCEILYHP

Query:  GKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERR--
        G AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++   +ND+ L+    L    + V  +I    GL+   +  
Subjt:  GKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERR--

Query:  LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL
        + +P+D+ +   ++ + H     +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G L
Subjt:  LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL

P0CT35 Transposon Tf2-2 polyprotein

7.8e-67

28.15

Show/hide

Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK +  N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG
         AFR   G +E++VM +G++ A A F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF    V F+G+ +S+ G
Subjt:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG

Query:  VSVDPVKIEAVTSWTRPSTVSEVRRFLG--------------LAAP----------FVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL
         +     I+ V  W +P    E+R+FLG              L  P          + W+     + +N+KQ LV+ PVL   D S   ++ +DAS   +
Subjt:  VSVDPVKIEAVTSWTRPSTVSEVRRFLG--------------LAAP----------FVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAV--------------------------------------------------DYDCEILYHP
        G VL Q+        V Y S ++   + NY   D E+ A+                                                  D++ EI Y P
Subjt:  GCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAV--------------------------------------------------DYDCEILYHP

Query:  GKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERR--
        G AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++   +ND+ L+    L    + V  +I    GL+   +  
Subjt:  GKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERR--

Query:  LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL
        + +P+D+ +   ++ + H     +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G L
Subjt:  LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL

P0CT36 Transposon Tf2-3 polyprotein

7.8e-67

28.15

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Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK +  N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG
         AFR   G +E++VM +G++ A A F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF    V F+G+ +S+ G
Subjt:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG

Query:  VSVDPVKIEAVTSWTRPSTVSEVRRFLG--------------LAAP----------FVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL
         +     I+ V  W +P    E+R+FLG              L  P          + W+     + +N+KQ LV+ PVL   D S   ++ +DAS   +
Subjt:  VSVDPVKIEAVTSWTRPSTVSEVRRFLG--------------LAAP----------FVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAV--------------------------------------------------DYDCEILYHP
        G VL Q+        V Y S ++   + NY   D E+ A+                                                  D++ EI Y P
Subjt:  GCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAV--------------------------------------------------DYDCEILYHP

Query:  GKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERR--
        G AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++   +ND+ L+    L    + V  +I    GL+   +  
Subjt:  GKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERR--

Query:  LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL
        + +P+D+ +   ++ + H     +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G L
Subjt:  LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL

P0CT37 Transposon Tf2-4 polyprotein

7.8e-67

28.15

Show/hide

Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK +  N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG
         AFR   G +E++VM +G++ A A F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF    V F+G+ +S+ G
Subjt:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG

Query:  VSVDPVKIEAVTSWTRPSTVSEVRRFLG--------------LAAP----------FVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL
         +     I+ V  W +P    E+R+FLG              L  P          + W+     + +N+KQ LV+ PVL   D S   ++ +DAS   +
Subjt:  VSVDPVKIEAVTSWTRPSTVSEVRRFLG--------------LAAP----------FVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAV--------------------------------------------------DYDCEILYHP
        G VL Q+        V Y S ++   + NY   D E+ A+                                                  D++ EI Y P
Subjt:  GCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAV--------------------------------------------------DYDCEILYHP

Query:  GKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERR--
        G AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++   +ND+ L+    L    + V  +I    GL+   +  
Subjt:  GKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERR--

Query:  LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL
        + +P+D+ +   ++ + H     +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G L
Subjt:  LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL

P0CT41 Transposon Tf2-12 polyprotein

7.8e-67

28.15

Show/hide

Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK +  N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG
         AFR   G +E++VM +G++ A A F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF    V F+G+ +S+ G
Subjt:  TAFRSRYGHYEFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAG

Query:  VSVDPVKIEAVTSWTRPSTVSEVRRFLG--------------LAAP----------FVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL
         +     I+ V  W +P    E+R+FLG              L  P          + W+     + +N+KQ LV+ PVL   D S   ++ +DAS   +
Subjt:  VSVDPVKIEAVTSWTRPSTVSEVRRFLG--------------LAAP----------FVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGL

Query:  GCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAV--------------------------------------------------DYDCEILYHP
        G VL Q+        V Y S ++   + NY   D E+ A+                                                  D++ EI Y P
Subjt:  GCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAV--------------------------------------------------DYDCEILYHP

Query:  GKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERR--
        G AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++   +ND+ L+    L    + V  +I    GL+   +  
Subjt:  GKANVVADALSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERR--

Query:  LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL
        + +P+D+ +   ++ + H     +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G L
Subjt:  LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

1.9e-12

31.54

Show/hide

Query:  HLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLG--HVVSKAGVSVDPVKIEAVTSWTRPSTVSEVRRFLGLAAPF-----------------------VWS
        HL +VLQ    ++ YA   KC F    +++LG  H++S  GVS DP K+EA+  W  P   +E+R FLGL   +                        W+
Subjt:  HLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLG--HVVSKAGVSVDPVKIEAVTSWTRPSTVSEVRRFLGLAAPF-----------------------VWS

Query:  KACEDSFQNLKQKLVNAPVLTVPDGSGSFV
        +    +F+ LK  +   PVL +PD    FV
Subjt:  KACEDSFQNLKQKLVNAPVLTVPDGSGSFV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCCCCGCAGAGCTGAAAGAACTGAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTCGTTAA
GAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAGGTAATCGTAAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTAC
AGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGGTATGGACACTAC
GAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCTGGCAGTGTTTATGAACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATTGA
CGATATCTTGATATACTCCAAGACGGAGGCCGAACATGAGGAGCATTTACGTATAGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGT
TTTGGCTGAAGCATGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGTTAAGATAGAGGCAGTCACCAGTTGGACCCGACCTTCCACAGTC
AGTGAGGTTCGTAGATTTCTGGGTTTAGCAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTAACGCACCGGTTCTTAC
TGTACCTGATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGTTTTGATGCAACAAGGTAAGGTGGTCGCTTATGCTTCTCGTCAGT
TGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCAGTGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCAAATGTGGTAGCTGATGCT
CTTAGTAGAAAGGTATCACATTCGGCAGCACTTATTACCCGACAGGCCCCATTGCATCGAGATCTTGAGCAGGCTGAGATTGCAGTGTCGGTGGGGGCAGTCACTATACA
GTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAAAGTAACGATTCTTATTTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAGCGG
TTGGGTTCTCCATATCCTCTAATGGTGGACTTGTGTTTGAGAGACGCCTCTGTGTGCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCTCACAGTTCCCCA
TTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAGGTAGCAGAATTTGTTAGTAGATGCTTGGTGTG
TCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVIVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHY
EFIVMSFGLTNALAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKHVSFLGHVVSKAGVSVDPVKIEAVTSWTRPSTV
SEVRRFLGLAAPFVWSKACEDSFQNLKQKLVNAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVDYDCEILYHPGKANVVADA
LSRKVSHSAALITRQAPLHRDLEQAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDSYLVEKRGLAEAGQAVGFSISSNGGLVFERRLCVPSDSAVKTELLSEAHSSP
FSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLL

Cmc01g0010531 (gene) of Melon (Charmono) v1.1 genome