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Cmc01g0010621 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0010621
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr01:5700499..5700957
RNA-Seq ExpressionCmc01g0010621
SyntenyCmc01g0010621
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0008622 - epsilon DNA polymerase complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004601 - peroxidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036567.1 peroxidase 64 [Cucumis melo var. makuwa]5.9e-6379.74Show/hide
Query:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT
        M+ N L R+R +FE PK LPP+RAVD+RI+T++ QKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIR SRS YS+PVLLVKKRDGGWRFCV+Y KLNQ++
Subjt:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT

Query:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMK-EDIEKTEFCTYEGH
        I+DKF IP+IEELLDELHGAEVFSKLDLR GYHQIRMK ED+EKT F T+EGH
Subjt:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMK-EDIEKTEFCTYEGH

KAA0050702.1 peroxidase 64 [Cucumis melo var. makuwa]1.2e-7999.34Show/hide
Query:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT
        MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT
Subjt:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT

Query:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMKEDIEKTEFCTYEGH
        ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMKEDIEKTEF TYEGH
Subjt:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMKEDIEKTEFCTYEGH

TYK07734.1 peroxidase 64 [Cucumis melo var. makuwa]6.3e-81100Show/hide
Query:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT
        MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT
Subjt:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT

Query:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMKEDIEKTEFCTYEGH
        ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMKEDIEKTEFCTYEGH
Subjt:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMKEDIEKTEFCTYEGH

TYK22651.1 reverse transcriptase [Cucumis melo var. makuwa]7.0e-6480.39Show/hide
Query:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT
        M+ NLL R+R +FE PK LPP+RAVD+RI+T++ QKPINVRPYKYGYIQKEEIEKLVS+MLQAGIIR SRS YS+PVLLVKKRDGGWRFCV+YRKLNQ++
Subjt:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT

Query:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMK-EDIEKTEFCTYEGH
        I+DKFPIP+IEELLDELH AEVFSKLDLR GYHQIRMK ED+EKT F T+EGH
Subjt:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMK-EDIEKTEFCTYEGH

XP_031744430.1 uncharacterized protein LOC116405043 [Cucumis sativus]1.1e-6177.12Show/hide
Query:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT
        MI NLL+++  +FE PK+LPP+R +D+RIL +  Q+PINVRPYKYGY+QKEEIEKLV EMLQAG+IR S S YSSPVLLVKK+DGGWRFCV+YRKLNQVT
Subjt:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT

Query:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRM-KEDIEKTEFCTYEGH
        ISDKFPIP+IEELLDELHGA VFSKLDL+ GYHQIRM KED+EKT F T+EGH
Subjt:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRM-KEDIEKTEFCTYEGH

TrEMBL top hitse value%identityAlignment
A0A5A7T4R8 Peroxidase 642.9e-6379.74Show/hide
Query:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT
        M+ N L R+R +FE PK LPP+RAVD+RI+T++ QKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIR SRS YS+PVLLVKKRDGGWRFCV+Y KLNQ++
Subjt:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT

Query:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMK-EDIEKTEFCTYEGH
        I+DKF IP+IEELLDELHGAEVFSKLDLR GYHQIRMK ED+EKT F T+EGH
Subjt:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMK-EDIEKTEFCTYEGH

A0A5A7U4F0 Peroxidase 645.8e-8099.34Show/hide
Query:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT
        MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT
Subjt:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT

Query:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMKEDIEKTEFCTYEGH
        ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMKEDIEKTEF TYEGH
Subjt:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMKEDIEKTEFCTYEGH

A0A5D3C910 Peroxidase 643.1e-81100Show/hide
Query:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT
        MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT
Subjt:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT

Query:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMKEDIEKTEFCTYEGH
        ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMKEDIEKTEFCTYEGH
Subjt:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMKEDIEKTEFCTYEGH

A0A5D3DG25 Reverse transcriptase3.4e-6480.39Show/hide
Query:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT
        M+ NLL R+R +FE PK LPP+RAVD+RI+T++ QKPINVRPYKYGYIQKEEIEKLVS+MLQAGIIR SRS YS+PVLLVKKRDGGWRFCV+YRKLNQ++
Subjt:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT

Query:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMK-EDIEKTEFCTYEGH
        I+DKFPIP+IEELLDELH AEVFSKLDLR GYHQIRMK ED+EKT F T+EGH
Subjt:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMK-EDIEKTEFCTYEGH

A0A5D3DUJ0 Ty3/gypsy retrotransposon protein7.1e-6281.05Show/hide
Query:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT
        MI NLL + R +FE+PK LPP+RAVD+RIL  + Q PINVRPYKYGYIQK EIE+LVSEMLQA IIR SRS YSSPVLLVKK+DGGWRFCV+YRKLNQVT
Subjt:  MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVT

Query:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMK-EDIEKTEFCTYEGH
        I+DKFPIP+IEELLDELHGAEVFSKLDLR GYHQIRMK EDIEKT F T+EGH
Subjt:  ISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMK-EDIEKTEFCTYEGH

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.5e-1941.38Show/hide
Query:  YKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLV-KKRDGG----WRFCVNYRKLNQVTISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRM
        Y Y    ++E+E  + +ML  GIIR+S S Y+SP+ +V KK+D      +R  ++YRKLN++T+ D+ PIP ++E+L +L     F+ +DL  G+HQI M
Subjt:  YKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLV-KKRDGG----WRFCVNYRKLNQVTISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRM

Query:  -KEDIEKTEFCTYEGH
          E + KT F T  GH
Subjt:  -KEDIEKTEFCTYEGH

P20825 Retrovirus-related Pol polyprotein from transposon 2975.8e-2136.31Show/hide
Query:  IPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGG-----WRFCVNYRKL
        +  LL +FR L     E          +L      PI  + Y      + E+E  V EML  G+IR S S Y+SP  +V K+        +R  ++YRKL
Subjt:  IPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGG-----WRFCVNYRKL

Query:  NQVTISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRM-KEDIEKTEFCTYEGH
        N++TI D++PIP ++E+L +L   + F+ +DL  G+HQI M +E I KT F T  GH
Subjt:  NQVTISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRM-KEDIEKTEFCTYEGH

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein4.0e-2244.68Show/hide
Query:  ELPPRRAVDNRILTVD--EQKP----INVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVTISDKFPIPIIE
        +LPPR A  N I      E KP      ++PY      ++EI K+V ++L    I  S+S  SSPV+LV K+DG +R CV+YR LN+ TISD FP+P I+
Subjt:  ELPPRRAVDNRILTVD--EQKP----INVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVTISDKFPIPIIE

Query:  ELLDELHGAEVFSKLDLRLGYHQIRMK-EDIEKTEFCTYEG
         LL  +  A++F+ LDL  GYHQI M+ +D  KT F T  G
Subjt:  ELLDELHGAEVFSKLDLRLGYHQIRMK-EDIEKTEFCTYEG

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.0e-2140.51Show/hide
Query:  MIPNLLKRFRGLFEMP-KELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKR-----DGGWRFCVNYR
        ++ +LL  F  +FE P   +    AV   I T + Q PI  + Y Y    + E+E+ + E+LQ GIIR S S Y+SP+ +V K+     +  +R  V+++
Subjt:  MIPNLLKRFRGLFEMP-KELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKR-----DGGWRFCVNYR

Query:  KLNQVTISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMKE-DIEKTEFCTYEG
        +LN VTI D +PIP I   L  L  A+ F+ LDL  G+HQI MKE DI KT F T  G
Subjt:  KLNQVTISDKFPIPIIEELLDELHGAEVFSKLDLRLGYHQIRMKE-DIEKTEFCTYEG

Q99315 Transposon Ty3-G Gag-Pol polyprotein4.0e-2244.68Show/hide
Query:  ELPPRRAVDNRILTVD--EQKP----INVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVTISDKFPIPIIE
        +LPPR A  N I      E KP      ++PY      ++EI K+V ++L    I  S+S  SSPV+LV K+DG +R CV+YR LN+ TISD FP+P I+
Subjt:  ELPPRRAVDNRILTVD--EQKP----INVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVTISDKFPIPIIE

Query:  ELLDELHGAEVFSKLDLRLGYHQIRMK-EDIEKTEFCTYEG
         LL  +  A++F+ LDL  GYHQI M+ +D  KT F T  G
Subjt:  ELLDELHGAEVFSKLDLRLGYHQIRMK-EDIEKTEFCTYEG

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein1.2e-0552.5Show/hide
Query:  IQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGW
        +++  ++  + EML+A II+ S S YSSPVLLV+K+DGGW
Subjt:  IQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCCTAATCTGTTAAAAAGGTTTAGGGGATTATTTGAGATGCCGAAGGAGTTACCTCCGAGAAGGGCCGTGGACAATCGAATATTGACTGTAGACGAACAG
AAGCCCATAAATGTTCGCCCCTACAAGTACGGGTACATACAGAAGGAAGAAATAGAGAAGTTAGTTTCGGAAATGCTTCAAGCGGGAATTATCAGGTCGAGCCGA
AGTTCATATTCCAGCCCAGTTTTACTAGTAAAGAAACGAGATGGAGGGTGGAGATTTTGCGTAAACTATCGTAAATTGAATCAGGTGACTATTTCCGATAAATTC
CCCATTCCCATAATCGAAGAACTGCTGGATGAGCTACATGGTGCTGAAGTTTTTTCAAAATTGGATTTGCGCTTGGGTTACCACCAAATTCGAATGAAGGAGGAC
ATTGAGAAAACTGAGTTTTGCACCTATGAAGGACATTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTCCTAATCTGTTAAAAAGGTTTAGGGGATTATTTGAGATGCCGAAGGAGTTACCTCCGAGAAGGGCCGTGGACAATCGAATATTGACTGTAGACGAACAG
AAGCCCATAAATGTTCGCCCCTACAAGTACGGGTACATACAGAAGGAAGAAATAGAGAAGTTAGTTTCGGAAATGCTTCAAGCGGGAATTATCAGGTCGAGCCGA
AGTTCATATTCCAGCCCAGTTTTACTAGTAAAGAAACGAGATGGAGGGTGGAGATTTTGCGTAAACTATCGTAAATTGAATCAGGTGACTATTTCCGATAAATTC
CCCATTCCCATAATCGAAGAACTGCTGGATGAGCTACATGGTGCTGAAGTTTTTTCAAAATTGGATTTGCGCTTGGGTTACCACCAAATTCGAATGAAGGAGGAC
ATTGAGAAAACTGAGTTTTGCACCTATGAAGGACATTAA
Protein sequenceShow/hide protein sequence
MIPNLLKRFRGLFEMPKELPPRRAVDNRILTVDEQKPINVRPYKYGYIQKEEIEKLVSEMLQAGIIRSSRSSYSSPVLLVKKRDGGWRFCVNYRKLNQVTISDKF
PIPIIEELLDELHGAEVFSKLDLRLGYHQIRMKEDIEKTEFCTYEGH