; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0012821 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0012821
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCMiso1.1chr01:9182305..9183150
RNA-Seq ExpressionCmc01g0012821
SyntenyCmc01g0012821
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU21337.1 hypothetical protein TSUD_189240 [Trifolium subterraneum]3.1e-11877.26Show/hide
Query:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS
        +L+KKLKPDG+V+KYKARLVAK FRQRENIDFFDTFS V +IT IRVLISIA L NL++HQMDVK AFLNGDLE+EIYMEQ E F++H +E+KVCKLDKS
Subjt:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS

Query:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ
        LYGLKQAPKQWHEKFDNL  S G ++NE+DKCIYYK +G +C IICLYVDDMLIFGSNL  +N+VKS+L  NF MK+LGEA VILGIKI R+E GI  DQ
Subjt:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ

Query:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE
        SHY+EKILKKY Y++ KPACTPYD SVKLFKNTGDSV Q++Y SIIGSLRY  DCTR DIAYVVGLLCRFTSRPS E
Subjt:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE

GAU47690.1 hypothetical protein TSUD_245810 [Trifolium subterraneum]3.1e-11877.26Show/hide
Query:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS
        +L+KKLKPDG+V+KYKARLVAK FRQRENIDFFDTFS V +IT IRVLISI  L NL++HQMDVK AFLNGDLE+EIYMEQ E F++H +E+KVCKLDKS
Subjt:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS

Query:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ
        LYGLKQAPKQWHEKFDNL  S G ++NE+DKCIYYK +G +C IICLYVDDMLIFGSNL  +N+VKS+L  NF MK+LGEA VILGIKI R+E GI LDQ
Subjt:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ

Query:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE
        SHY+EKILKKY YF+ KPACTPYD SVKLFKNT DSV Q++Y SIIGSLRY  DCTR DIAYVVGLLCRFTSRPS E
Subjt:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE

GAU49932.1 hypothetical protein TSUD_408340 [Trifolium subterraneum]1.7e-11676.17Show/hide
Query:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS
        +L+KKLKPDG+V+KYKARL+AK FRQRENIDFFDTFS V +IT IRV ISIA L NL++HQMDVK AFLNGDLE+EIYMEQ E F++H +E+KVCKLDKS
Subjt:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS

Query:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ
        LYGLKQAPKQWHEKFDNL  S G ++NE+D CIYYK +G +C IICLYVDDMLIFGSNL  +N+VKS+L  NF MK+LGEA VILGIKI R+E  I LDQ
Subjt:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ

Query:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE
        SHY+EKILKKY YF+ KPACTPYD SVKLFKN GDSV Q++Y SIIGSLRY  DCTR DIAYVVGLLCRFTSRPS E
Subjt:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE

KAA0036533.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]4.5e-12583.03Show/hide
Query:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS
        +LRKK KPDGS+DKYKARLVAK FRQ EN+DFFDTFS V +IT IRVLISI +L+NLLIHQMDVK  FLNGDLE+EIYMEQ E FIV  +ESKVCKLDKS
Subjt:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS

Query:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ
        LYGLKQAPK+WH+KFDNL  SKG KVNE++KCIYYKT+GRLCIIICLYVDDMLIFGSNLH+INDVKSMLSANF MK+LGEADVIL IKI RTENGIFLDQ
Subjt:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ

Query:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE
        SHYIEKILKKYNYF+SK A TPYDSSVKLFKNT DSVNQS+Y SIIGS+RY  DCT+ DIAY VGLL RFTSRPSLE
Subjt:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE

KAA0058878.1 putative polyprotein [Cucumis melo var. makuwa]4.2e-12382.67Show/hide
Query:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS
        +LRKK+K DGSVDKYKARLVAK FRQR+NI+FFDTFS V +IT IRVLISI+ L+NLLIHQMDVK  FLNGDLE+EIYMEQ E FIVH +E KVCKLDKS
Subjt:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS

Query:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ
        LYGL+QAPKQ HEKFD L  SKG KVNE+DKC+YYKT+GRLCIIICLYVDDML F SNLHVINDVKSMLS NF MK+LGEAD+ILGIKI RT+NGI LDQ
Subjt:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ

Query:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE
        S+YIEKILKKYNYF+SKPACTPYDSSVKLFKNTGD+VNQS+YTSIIGSLRY  DCTR DIAY VGLLCRFTSRP LE
Subjt:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE

TrEMBL top hitse value%identityAlignment
A0A2Z6MWZ1 Reverse transcriptase Ty1/copia-type domain-containing protein1.5e-11877.26Show/hide
Query:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS
        +L+KKLKPDG+V+KYKARLVAK FRQRENIDFFDTFS V +IT IRVLISIA L NL++HQMDVK AFLNGDLE+EIYMEQ E F++H +E+KVCKLDKS
Subjt:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS

Query:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ
        LYGLKQAPKQWHEKFDNL  S G ++NE+DKCIYYK +G +C IICLYVDDMLIFGSNL  +N+VKS+L  NF MK+LGEA VILGIKI R+E GI  DQ
Subjt:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ

Query:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE
        SHY+EKILKKY Y++ KPACTPYD SVKLFKNTGDSV Q++Y SIIGSLRY  DCTR DIAYVVGLLCRFTSRPS E
Subjt:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE

A0A2Z6PC97 CCHC-type domain-containing protein1.5e-11877.26Show/hide
Query:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS
        +L+KKLKPDG+V+KYKARLVAK FRQRENIDFFDTFS V +IT IRVLISI  L NL++HQMDVK AFLNGDLE+EIYMEQ E F++H +E+KVCKLDKS
Subjt:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS

Query:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ
        LYGLKQAPKQWHEKFDNL  S G ++NE+DKCIYYK +G +C IICLYVDDMLIFGSNL  +N+VKS+L  NF MK+LGEA VILGIKI R+E GI LDQ
Subjt:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ

Query:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE
        SHY+EKILKKY YF+ KPACTPYD SVKLFKNT DSV Q++Y SIIGSLRY  DCTR DIAYVVGLLCRFTSRPS E
Subjt:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE

A0A2Z6PHW1 CCHC-type domain-containing protein8.4e-11776.17Show/hide
Query:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS
        +L+KKLKPDG+V+KYKARL+AK FRQRENIDFFDTFS V +IT IRV ISIA L NL++HQMDVK AFLNGDLE+EIYMEQ E F++H +E+KVCKLDKS
Subjt:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS

Query:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ
        LYGLKQAPKQWHEKFDNL  S G ++NE+D CIYYK +G +C IICLYVDDMLIFGSNL  +N+VKS+L  NF MK+LGEA VILGIKI R+E  I LDQ
Subjt:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ

Query:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE
        SHY+EKILKKY YF+ KPACTPYD SVKLFKN GDSV Q++Y SIIGSLRY  DCTR DIAYVVGLLCRFTSRPS E
Subjt:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE

A0A5A7T0X0 Retrotransposon protein, putative, Ty1-copia subclass2.2e-12583.03Show/hide
Query:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS
        +LRKK KPDGS+DKYKARLVAK FRQ EN+DFFDTFS V +IT IRVLISI +L+NLLIHQMDVK  FLNGDLE+EIYMEQ E FIV  +ESKVCKLDKS
Subjt:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS

Query:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ
        LYGLKQAPK+WH+KFDNL  SKG KVNE++KCIYYKT+GRLCIIICLYVDDMLIFGSNLH+INDVKSMLSANF MK+LGEADVIL IKI RTENGIFLDQ
Subjt:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ

Query:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE
        SHYIEKILKKYNYF+SK A TPYDSSVKLFKNT DSVNQS+Y SIIGS+RY  DCT+ DIAY VGLL RFTSRPSLE
Subjt:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE

A0A5D3DJH9 Putative polyprotein2.1e-12382.67Show/hide
Query:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS
        +LRKK+K DGSVDKYKARLVAK FRQR+NI+FFDTFS V +IT IRVLISI+ L+NLLIHQMDVK  FLNGDLE+EIYMEQ E FIVH +E KVCKLDKS
Subjt:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKS

Query:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ
        LYGL+QAPKQ HEKFD L  SKG KVNE+DKC+YYKT+GRLCIIICLYVDDML F SNLHVINDVKSMLS NF MK+LGEAD+ILGIKI RT+NGI LDQ
Subjt:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ

Query:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE
        S+YIEKILKKYNYF+SKPACTPYDSSVKLFKNTGD+VNQS+YTSIIGSLRY  DCTR DIAY VGLLCRFTSRP LE
Subjt:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.3e-4237.78Show/hide
Query:  GSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKSLYGLKQAPK
        G+  +YKARLVA+ F Q+  ID+ +TF+ V +I+  R ++S+ +  NL +HQMDVK AFLNG L++EIYM   +   +      VCKL+K++YGLKQA +
Subjt:  GSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKSLYGLKQAPK

Query:  QWHEKFDNLFKSKGLKVNENDKCIYYKTEGRL--CIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQSHYIEKI
         W E F+   K      +  D+CIY   +G +   I + LYVDD++I   ++  +N+ K  L   F M +L E    +GI+I   E+ I+L QS Y++KI
Subjt:  QWHEKFDNLFKSKGLKVNENDKCIYYKTEGRL--CIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQSHYIEKI

Query:  LKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE
        L K+N        TP  S +       D    +   S+IG L Y + CTR D+   V +L R++S+ + E
Subjt:  LKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-6047.2Show/hide
Query:  KLKPDG--SVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKSLY
        KLK DG   + +YKARLV K F Q++ IDF + FS V+K+T IR ++S+A   +L + Q+DVK AFL+GDLE+EIYMEQ E F V  K+  VCKL+KSLY
Subjt:  KLKPDG--SVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKSLY

Query:  GLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYK--TEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKII--RTENGIFL
        GLKQAP+QW+ KFD+  KS+      +D C+Y+K  +E    II+ LYVDDMLI G +  +I  +K  LS +F MK+LG A  ILG+KI+  RT   ++L
Subjt:  GLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYK--TEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKII--RTENGIFL

Query:  DQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSK-------YTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE
         Q  YIE++L+++N   +KP  TP    +KL K    +  + K       Y+S +GSL Y + CTR DIA+ VG++ RF   P  E
Subjt:  DQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSK-------YTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE

P25600 Putative transposon Ty5-1 protein YCL074W1.5e-2534.42Show/hide
Query:  MDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKSLYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV
        MDV  AFLN  +++ IY++Q   F+       V +L   +YGLKQAP  W+E  +N  K  G   +E +  +Y+++     I I +YVDD+L+   +  +
Subjt:  MDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKSLYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHV

Query:  INDVKSMLSANFGMKNLGEADVILGIKIIRTENG-IFLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ-SKYTSIIGSLRYTVDCTRAD
         + VK  L+  + MK+LG+ D  LG+ I ++ NG I L    YI K   +      K   TP  +S  LF+ T   +   + Y SI+G L +  +  R D
Subjt:  INDVKSMLSANFGMKNLGEADVILGIKIIRTENG-IFLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ-SKYTSIIGSLRYTVDCTRAD

Query:  IAYVVGLLCRFTSRP
        I+Y V LL RF   P
Subjt:  IAYVVGLLCRFTSRP

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.3e-4538.91Show/hide
Query:  KKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKSLYG
        KK   DGS+++YKARLVAK + QR  +D+ +TFS VIK T IR+++ +AV  +  I Q+DV  AFL G L  ++YM Q   FI  D+ + VCKL K+LYG
Subjt:  KKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKSLYG

Query:  LKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQSHY
        LKQAP+ W+ +  N   + G   + +D  ++    G+  + + +YVDD+LI G++  ++++    LS  F +K+  E    LGI+  R   G+ L Q  Y
Subjt:  LKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQSHY

Query:  IEKILKKYNYFESKPACTPYDSSVKLFKNTGDSV-NQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE
        I  +L + N   +KP  TP   S KL   +G  + + ++Y  I+GSL+Y +  TR DI+Y V  L +F   P+ E
Subjt:  IEKILKKYNYFESKPACTPYDSSVKLFKNTGDSV-NQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLE

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE25.9e-4337Show/hide
Query:  KKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKSLYG
        KK   DGS+++YKARLVAK + QR  +D+ +TFS VIK T IR+++ +AV  +  I Q+DV  AFL G L  E+YM Q   F+  D+   VC+L K++YG
Subjt:  KKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKSLYG

Query:  LKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQSHY
        LKQAP+ W+ +      + G   + +D  ++    GR  I + +YVDD+LI G++  ++      LS  F +K   +    LGI+  R   G+ L Q  Y
Subjt:  LKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQSHY

Query:  IEKILKKYNYFESKPACTPYDSSVKLFKNTGDSV-NQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPS
           +L + N   +KP  TP  +S KL  ++G  + + ++Y  I+GSL+Y +  TR D++Y V  L ++   P+
Subjt:  IEKILKKYNYFESKPACTPYDSSVKLFKNTGDSV-NQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPS

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.2e-4536.82Show/hide
Query:  KLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKES----KVCKLDKS
        K   DG++++YKARLVAK + Q+E IDF +TFS V K+T ++++++I+ + N  +HQ+D+  AFLNGDL++EIYM+    +     +S     VC L KS
Subjt:  KLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKES----KVCKLDKS

Query:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ
        +YGLKQA +QW  KF       G   + +D   + K    L + + +YVDD++I  +N   ++++KS L + F +++LG     LG++I R+  GI + Q
Subjt:  LYGLKQAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQ

Query:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNT-GDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSL
          Y   +L +      KP+  P D SV    ++ GD V+   Y  +IG L Y +  TR DI++ V  L +F+  P L
Subjt:  SHYIEKILKKYNYFESKPACTPYDSSVKLFKNT-GDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSL

ATMG00810.1 DNA/RNA polymerases superfamily protein3.3e-1736.36Show/hide
Query:  ICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTS
        + LYVDD+L+ GS+  ++N +   LS+ F MK+LG     LGI+I    +G+FL Q+ Y E+IL      + KP  TP    +    +T    + S + S
Subjt:  ICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTS

Query:  IIGSLRYTVDCTRADIAYVVGLLCRFTSRPSL
        I+G+L+Y +  TR DI+Y V ++C+    P+L
Subjt:  IIGSLRYTVDCTRADIAYVVGLLCRFTSRPSL

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)1.7e-0544.23Show/hide
Query:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIA
        + + KL  DG++D+ KARLVAK F Q E I F +T+S V++   IR ++++A
Subjt:  MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAAGGAAGAAACTCAAACCTGATGGATCAGTAGATAAGTATAAGGCTAGATTAGTAGCAAAAGAATTTAGGCAGAGAGAGAATATAGATTTCTTTGATACT
TTTTCCCTAGTCATTAAAATCACCTGTATTAGAGTGTTGATATCTATAGCTGTCCTTGACAATCTCTTAATCCATCAGATGGATGTTAAAATTGCTTTCTTAAAT
GGTGATTTAGAAAAAGAGATTTATATGGAACAATCTGAAGATTTCATAGTTCACGACAAAGAATCCAAAGTTTGTAAATTAGATAAATCCCTTTATGGCCTAAAA
CAAGCTCCCAAGCAATGGCATGAAAAGTTTGACAACTTATTCAAGTCAAAAGGACTCAAAGTAAATGAGAATGACAAATGTATCTACTATAAAACTGAAGGTAGG
TTATGTATTATCATATGCCTATACGTAGATGATATGTTAATCTTTGGATCAAACTTGCACGTCATAAATGATGTAAAATCTATGTTGAGTGCAAACTTTGGCATG
AAAAACCTAGGTGAAGCTGATGTAATCTTAGGCATCAAAATTATAAGAACTGAAAATGGAATTTTCTTAGATCAATCTCATTACATAGAAAAGATTCTAAAGAAG
TACAACTACTTCGAAAGTAAACCAGCATGTACACCTTATGACTCTAGTGTAAAATTATTCAAGAACACCGGTGACAGTGTTAACCAATCCAAGTACACTAGTATA
ATAGGTAGTTTGAGGTATACTGTTGATTGCACTAGAGCAGACATAGCTTACGTTGTAGGATTACTATGTAGGTTTACTAGTAGACCCAGTCTAGAACCTGGAATG
CAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAAGGAAGAAACTCAAACCTGATGGATCAGTAGATAAGTATAAGGCTAGATTAGTAGCAAAAGAATTTAGGCAGAGAGAGAATATAGATTTCTTTGATACT
TTTTCCCTAGTCATTAAAATCACCTGTATTAGAGTGTTGATATCTATAGCTGTCCTTGACAATCTCTTAATCCATCAGATGGATGTTAAAATTGCTTTCTTAAAT
GGTGATTTAGAAAAAGAGATTTATATGGAACAATCTGAAGATTTCATAGTTCACGACAAAGAATCCAAAGTTTGTAAATTAGATAAATCCCTTTATGGCCTAAAA
CAAGCTCCCAAGCAATGGCATGAAAAGTTTGACAACTTATTCAAGTCAAAAGGACTCAAAGTAAATGAGAATGACAAATGTATCTACTATAAAACTGAAGGTAGG
TTATGTATTATCATATGCCTATACGTAGATGATATGTTAATCTTTGGATCAAACTTGCACGTCATAAATGATGTAAAATCTATGTTGAGTGCAAACTTTGGCATG
AAAAACCTAGGTGAAGCTGATGTAATCTTAGGCATCAAAATTATAAGAACTGAAAATGGAATTTTCTTAGATCAATCTCATTACATAGAAAAGATTCTAAAGAAG
TACAACTACTTCGAAAGTAAACCAGCATGTACACCTTATGACTCTAGTGTAAAATTATTCAAGAACACCGGTGACAGTGTTAACCAATCCAAGTACACTAGTATA
ATAGGTAGTTTGAGGTATACTGTTGATTGCACTAGAGCAGACATAGCTTACGTTGTAGGATTACTATGTAGGTTTACTAGTAGACCCAGTCTAGAACCTGGAATG
CAATAG
Protein sequenceShow/hide protein sequence
MLRKKLKPDGSVDKYKARLVAKEFRQRENIDFFDTFSLVIKITCIRVLISIAVLDNLLIHQMDVKIAFLNGDLEKEIYMEQSEDFIVHDKESKVCKLDKSLYGLK
QAPKQWHEKFDNLFKSKGLKVNENDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFGMKNLGEADVILGIKIIRTENGIFLDQSHYIEKILKK
YNYFESKPACTPYDSSVKLFKNTGDSVNQSKYTSIIGSLRYTVDCTRADIAYVVGLLCRFTSRPSLEPGMQ