; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0013111 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0013111
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr01:9667339..9668178
RNA-Seq ExpressionCmc01g0013111
SyntenyCmc01g0013111
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040542.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.1e-13090.27Show/hide
Query:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK
        MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVTVK+RYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK
Subjt:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK

Query:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG
        T   SRYGHYEF+VMSFGLTN PAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFSKCE WL+KV+FLGHVVSSEG
Subjt:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG

Query:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF
        VSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDFSRIASPLTQLTRKGTPF
Subjt:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF

KAA0054634.1 pol protein [Cucumis melo var. makuwa]3.6e-13090.66Show/hide
Query:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK
        MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+K+KDGSM LCIDYRELNKVTVK+RYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK
Subjt:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK

Query:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG
        TT  SRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFSKCE WL+KV+FLGHVVSSEG
Subjt:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG

Query:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF
        VSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDFSRIASPLTQLTRKGTPF
Subjt:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF

KAA0058812.1 pol protein [Cucumis melo var. makuwa]4.6e-13089.88Show/hide
Query:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK
        MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVT+K+RYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK
Subjt:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK

Query:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG
        T   SRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDF+D+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFSKCE WL+KV+FLGHVVSSEG
Subjt:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG

Query:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF
        VSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDFSRIASPLTQLTRKGTPF
Subjt:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF

KAA0060745.1 pol protein [Cucumis melo var. makuwa]4.6e-13090.27Show/hide
Query:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK
        MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVTVK+RYPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK
Subjt:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK

Query:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG
        T   SRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFSKCE WL+KV+FLGHVVSSEG
Subjt:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG

Query:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF
        VSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDFSRIASPLTQLTRKGTPF
Subjt:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF

KAA0063793.1 pol protein [Cucumis melo var. makuwa]2.1e-13090.66Show/hide
Query:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK
        MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVTVK+RYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK
Subjt:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK

Query:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG
        T   SRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFSKCE WL+KV+FLGHVVSSEG
Subjt:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG

Query:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF
        VSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDFSRIASPLTQLTRKGTPF
Subjt:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF

TrEMBL top hitse value%identityAlignment
A0A5A7SSL3 Reverse transcriptase2.9e-13090.27Show/hide
Query:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK
        MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVTVK+RYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK
Subjt:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK

Query:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG
        T   SRYGHY+F+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFSKCE WL+KV+FLGHVVSSEG
Subjt:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG

Query:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF
        VSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDFSRIASPLTQLTRKGTPF
Subjt:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF

A0A5A7UHL7 Reverse transcriptase1.7e-13090.66Show/hide
Query:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK
        MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+K+KDGSM LCIDYRELNKVTVK+RYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK
Subjt:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK

Query:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG
        TT  SRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFSKCE WL+KV+FLGHVVSSEG
Subjt:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG

Query:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF
        VSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDFSRIASPLTQLTRKGTPF
Subjt:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF

A0A5A7USG7 Reverse transcriptase2.2e-13089.88Show/hide
Query:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK
        MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVT+K+RYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK
Subjt:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK

Query:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG
        T   SRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDF+D+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFSKCE WL+KV+FLGHVVSSEG
Subjt:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG

Query:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF
        VSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDFSRIASPLTQLTRKGTPF
Subjt:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF

A0A5A7V4E4 Reverse transcriptase2.2e-13090.27Show/hide
Query:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK
        MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVTVK+RYPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK
Subjt:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK

Query:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG
        T   SRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFSKCE WL+KV+FLGHVVSSEG
Subjt:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG

Query:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF
        VSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDFSRIASPLTQLTRKGTPF
Subjt:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF

A0A5A7V6R2 Reverse transcriptase1.0e-13090.66Show/hide
Query:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK
        MAPA+LKELKVQLQELLDKGFIRPSVSPWGAPVLF+KKKDGSM LCIDYRELNKVTVK+RYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK
Subjt:  MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK

Query:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG
        T   SRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTE EHE+ LHQVL TLRANKLYAKFSKCE WL+KV+FLGHVVSSEG
Subjt:  TTSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEG

Query:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF
        VSVDPAKIE VT+WPR STVSEIRS LG  GYYRRFVEDFSRIASPLTQLTRKGTPF
Subjt:  VSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPF

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.8e-5037.7Show/hide
Query:  KELKVQLQELLDKGFIRPSVSPWGAPV-LFMKKKDGS----MNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKT
        +E++ Q+Q++L++G IR S SP+ +P+ +  KK+D S      + IDYR+LN++TV  R+P+P +D++  +L     F+ IDL  G+HQ+ +    + KT
Subjt:  KELKVQLQELLDKGFIRPSVSPWGAPV-LFMKKKDGS----MNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKT

Query:  TSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEGV
           +++GHYE++ M FGL NAPA F   MN + +  L+   +V++DDI+V+S +  EH   L  V   L    L  +  KCE   ++ +FLGHV++ +G+
Subjt:  TSCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEGV

Query:  SVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRK
          +P KIE +  +P  +   EI++ LG TGYYR+F+ +F+ IA P+T+  +K
Subjt:  SVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRK

P20825 Retrovirus-related Pol polyprotein from transposon 2973.4e-5137.15Show/hide
Query:  ELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKD-----GSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTT
        E++ Q+QE+L++G IR S SP+ +P   + KK          + IDYR+LN++T+  RYP+P +D++  +L     F+ IDL  G+HQ+ + +  I KT 
Subjt:  ELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKD-----GSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTT

Query:  SCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEGVS
          ++ GHYE++ M FGL NAPA F   MN + +  L+   +V++DDI+++S +  EH + +  V   L    L  +  KCE   K+ +FLGH+V+ +G+ 
Subjt:  SCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEGVS

Query:  VDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGT
         +P K++ + S+P  +   EIR+ LG TGYYR+F+ +++ IA P+T   +K T
Subjt:  VDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGT

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.3e-4739.83Show/hide
Query:  KELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSR
        +E+   +Q+LLD  FI PS SP  +PV+ + KKDG+  LC+DYR LNK T+   +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KT   + 
Subjt:  KELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSR

Query:  YGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEGVSVDPA
         G YE+ VM FGL NAP+ F   M   F+D    FV V++DDIL++S++  EH   L  VL  L+   L  K  KC+   ++  FLG+ +  + ++    
Subjt:  YGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEGVSVDPA

Query:  KIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPL
        K   +  +P   TV + +  LG   YYRRF+ + S+IA P+
Subjt:  KIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.9e-4936.8Show/hide
Query:  ELKVQLQELLDKGFIRPSVSPWGAPVLFMKKK-----DGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTT
        E++ Q+ ELL  G IRPS SP+ +P+  + KK     +    + +D++ LN VT+   YP+P I+     L  A  F+ +DL SG+HQ+ +++SDIPKT 
Subjt:  ELKVQLQELLDKGFIRPSVSPWGAPVLFMKKK-----DGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTT

Query:  SCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEGVS
          +  G YEF+ + FGL NAPA+F  +++ + ++ +     V+IDDI+V+S+    H   L  VL +L    L     K      +V FLG++V+++G+ 
Subjt:  SCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEGVS

Query:  VDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTR
         DP K+  ++  P  ++V E++  LG T YYR+F++D++++A PLT LTR
Subjt:  VDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTR

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.3e-4739.83Show/hide
Query:  KELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSR
        +E+   +Q+LLD  FI PS SP  +PV+ + KKDG+  LC+DYR LNK T+   +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KT   + 
Subjt:  KELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSR

Query:  YGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEGVSVDPA
         G YE+ VM FGL NAP+ F   M   F+D    FV V++DDIL++S++  EH   L  VL  L+   L  K  KC+   ++  FLG+ +  + ++    
Subjt:  YGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEGVSVDPA

Query:  KIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPL
        K   +  +P   TV + +  LG   YYRRF+ + S+IA P+
Subjt:  KIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein8.7e-1838.74Show/hide
Query:  DQLHQVLGTLRANKLYAKFSKCELWLKKVSFLG--HVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPFF
        + L  VL     ++ YA   KC     ++++LG  H++S EGVS DPAK+E +  WP     +E+R  LG TGYYRRFV+++ +I  PLT+L +K +   
Subjt:  DQLHQVLGTLRANKLYAKFSKCELWLKKVSFLG--HVVSSEGVSVDPAKIEVVTSWPRSSTVSEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPFF

Query:  GTQLVSLVSKS
         T++ +L  K+
Subjt:  GTQLVSLVSKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCAGCTAAGCTGAAGGAACTAAAGGTCCAGTTACAGGAGTTACTGGACAAGGGCTTCATACGACCTAGCGTGTCACCTTGGGGAGCGCCAGTATTGTTTATGAA
GAAGAAAGATGGATCGATGAACCTTTGCATTGACTATAGAGAGCTAAATAAGGTGACAGTAAAAAGTCGTTATCCTTTGCCCAGGATTGATGACTTGTTTGACCAGCTGC
AAGGAGCCACTGTCTTCTCTAAGATCGATTTACGTTCGGGATACCACCAGTTGAGGATCAGAGACAGTGATATTCCTAAGACTACGTCCTGTTCCAGATACGGGCATTAC
GAGTTCATCGTGATGTCCTTTGGTTTGACCAATGCTCCCGCAGTATTTATGGACTTAATGAACAGAGTGTTTAAGGACTTCTTAGACACGTTTGTTATAGTCTTCATTGA
TGATATCTTGGTTTACTCCAAGACAGAGGTCGAGCATGAGGATCAATTGCATCAAGTTTTGGGGACTCTTCGAGCTAATAAGCTGTATGCCAAGTTTTCCAAGTGTGAGT
TATGGCTGAAGAAGGTATCTTTTCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTGTAGATCCAGCAAAGATTGAAGTTGTTACTAGTTGGCCTCGATCGTCTACAGTC
AGTGAGATCCGTAGTATTCTAGGTCGAACAGGTTATTATAGGAGGTTCGTGGAAGACTTTTCTCGTATAGCTAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCATT
TTTTGGAACCCAACTTGTGAGTCTAGTTTCCAAGAGCTCAAGCAGAAGCTTGTGTTTGCACCAGTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCAGCTAAGCTGAAGGAACTAAAGGTCCAGTTACAGGAGTTACTGGACAAGGGCTTCATACGACCTAGCGTGTCACCTTGGGGAGCGCCAGTATTGTTTATGAA
GAAGAAAGATGGATCGATGAACCTTTGCATTGACTATAGAGAGCTAAATAAGGTGACAGTAAAAAGTCGTTATCCTTTGCCCAGGATTGATGACTTGTTTGACCAGCTGC
AAGGAGCCACTGTCTTCTCTAAGATCGATTTACGTTCGGGATACCACCAGTTGAGGATCAGAGACAGTGATATTCCTAAGACTACGTCCTGTTCCAGATACGGGCATTAC
GAGTTCATCGTGATGTCCTTTGGTTTGACCAATGCTCCCGCAGTATTTATGGACTTAATGAACAGAGTGTTTAAGGACTTCTTAGACACGTTTGTTATAGTCTTCATTGA
TGATATCTTGGTTTACTCCAAGACAGAGGTCGAGCATGAGGATCAATTGCATCAAGTTTTGGGGACTCTTCGAGCTAATAAGCTGTATGCCAAGTTTTCCAAGTGTGAGT
TATGGCTGAAGAAGGTATCTTTTCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTGTAGATCCAGCAAAGATTGAAGTTGTTACTAGTTGGCCTCGATCGTCTACAGTC
AGTGAGATCCGTAGTATTCTAGGTCGAACAGGTTATTATAGGAGGTTCGTGGAAGACTTTTCTCGTATAGCTAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCATT
TTTTGGAACCCAACTTGTGAGTCTAGTTTCCAAGAGCTCAAGCAGAAGCTTGTGTTTGCACCAGTCCTGA
Protein sequenceShow/hide protein sequence
MAPAKLKELKVQLQELLDKGFIRPSVSPWGAPVLFMKKKDGSMNLCIDYRELNKVTVKSRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTTSCSRYGHY
EFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEVEHEDQLHQVLGTLRANKLYAKFSKCELWLKKVSFLGHVVSSEGVSVDPAKIEVVTSWPRSSTV
SEIRSILGRTGYYRRFVEDFSRIASPLTQLTRKGTPFFGTQLVSLVSKSSSRSLCLHQS