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Cmc01g0013151 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0013151
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCMiso1.1chr01:9720536..9720946
RNA-Seq ExpressionCmc01g0013151
SyntenyCmc01g0013151
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056771.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.8e-5091.23Show/hide
Query:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL
        MAQPT FQDKTCPNHV LLHKSLYGLKQA RAWFERFTSYLFTLGFVASTVDPSLFIRSV S LTY LLYV DIIVTGP+YLYISVLKNQLALEFKISD 
Subjt:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL

Query:  GPLKYFLGLEIQSN
        GPLKYFLGLEIQS+
Subjt:  GPLKYFLGLEIQSN

KAA0057165.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.2e-4888.6Show/hide
Query:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL
        MAQPTGFQDKTCPNHV LL+KSLYGLKQA RAWFERF SYLFTL FVAST DPSLFIRSV SSLTY LLYV +IIV GPDYLYI VLKNQLALEFKISDL
Subjt:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL

Query:  GPLKYFLGLEIQSN
        GPLKYFLGLEIQS+
Subjt:  GPLKYFLGLEIQSN

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.6e-5192.11Show/hide
Query:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL
        M QPTGFQ+KTCPNHV LLHKSLYGLKQA RAWFERFTSYLFTLGFVAST DPSLFIRSV SSLTY LLYVDDIIVTGPDYLYIS LKNQLALEFKISDL
Subjt:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL

Query:  GPLKYFLGLEIQSN
        GPLKYFLGLEIQS+
Subjt:  GPLKYFLGLEIQSN

TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.8e-5091.23Show/hide
Query:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL
        MAQPT FQDKTCPNHV LLHKSLYGLKQA RAWFERFTSYLFTLGFVASTVDPSLFIRSV S LTY LLYV DIIVTGP+YLYISVLKNQLALEFKISD 
Subjt:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL

Query:  GPLKYFLGLEIQSN
        GPLKYFLGLEIQS+
Subjt:  GPLKYFLGLEIQSN

TYK00083.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.9e-4684.35Show/hide
Query:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL
        M+QPT FQDKTCPNHV LLHKSLYGLKQA RAWFE FTSYLFTLGFV S  DPSLFIRSV SSLTY LLYVDDIIVTGPD  YIS+LK QLALEF+ISDL
Subjt:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL

Query:  GPLKYFLGLEIQSNP
        GPLKYFLGL+I S P
Subjt:  GPLKYFLGLEIQSNP

TrEMBL top hitse value%identityAlignment
A0A5A7UTE5 Putative mitochondrial protein4.3e-5091.23Show/hide
Query:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL
        MAQPT FQDKTCPNHV LLHKSLYGLKQA RAWFERFTSYLFTLGFVASTVDPSLFIRSV S LTY LLYV DIIVTGP+YLYISVLKNQLALEFKISD 
Subjt:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL

Query:  GPLKYFLGLEIQSN
        GPLKYFLGLEIQS+
Subjt:  GPLKYFLGLEIQSN

A0A5A7UZE5 Putative mitochondrial protein1.7e-5192.11Show/hide
Query:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL
        M QPTGFQ+KTCPNHV LLHKSLYGLKQA RAWFERFTSYLFTLGFVAST DPSLFIRSV SSLTY LLYVDDIIVTGPDYLYIS LKNQLALEFKISDL
Subjt:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL

Query:  GPLKYFLGLEIQSN
        GPLKYFLGLEIQS+
Subjt:  GPLKYFLGLEIQSN

A0A5D3BEU0 Putative mitochondrial protein4.3e-5091.23Show/hide
Query:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL
        MAQPT FQDKTCPNHV LLHKSLYGLKQA RAWFERFTSYLFTLGFVASTVDPSLFIRSV S LTY LLYV DIIVTGP+YLYISVLKNQLALEFKISD 
Subjt:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL

Query:  GPLKYFLGLEIQSN
        GPLKYFLGLEIQS+
Subjt:  GPLKYFLGLEIQSN

A0A5D3BJZ6 Putative mitochondrial protein2.9e-4684.35Show/hide
Query:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL
        M+QPT FQDKTCPNHV LLHKSLYGLKQA RAWFE FTSYLFTLGFV S  DPSLFIRSV SSLTY LLYVDDIIVTGPD  YIS+LK QLALEF+ISDL
Subjt:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL

Query:  GPLKYFLGLEIQSNP
        GPLKYFLGL+I S P
Subjt:  GPLKYFLGLEIQSNP

A0A5D3DUH6 Putative mitochondrial protein4.0e-4888.6Show/hide
Query:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL
        MAQPTGFQDKTCPNHV LL+KSLYGLKQA RAWFERF SYLFTL FVAST DPSLFIRSV SSLTY LLYV +IIV GPDYLYI VLKNQLALEFKISDL
Subjt:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL

Query:  GPLKYFLGLEIQSN
        GPLKYFLGLEIQS+
Subjt:  GPLKYFLGLEIQSN

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.3e-1137.62Show/hide
Query:  NHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFI--RSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEI
        ++V  L+K++YGLKQA R WFE F   L    FV S+VD  ++I  +   +   Y LLYVDD+++   D   ++  K  L  +F+++DL  +K+F+G+ I
Subjt:  NHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFI--RSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEI

Query:  Q
        +
Subjt:  Q

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.3e-1540.18Show/hide
Query:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSL-FIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISD
        M QP GF+     + V  L+KSLYGLKQA R W+ +F S++ +  ++ +  DP + F R  E++    LLYVDD+++ G D   I+ LK  L+  F + D
Subjt:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSL-FIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISD

Query:  LGPLKYFLGLEI
        LGP +  LG++I
Subjt:  LGPLKYFLGLEI

P25600 Putative transposon Ty5-1 protein YCL074W1.7e-1133.93Show/hide
Query:  QPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGP
        QP GF ++  P++V  L+  +YGLKQA   W E   + L  +GF     +  L+ RS      Y  +YVDD++V  P       +K +L   + + DLG 
Subjt:  QPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGP

Query:  LKYFLGLEIQSN
        +  FLGL I  +
Subjt:  LKYFLGLEIQSN

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.1e-2246.96Show/hide
Query:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL
        M+QP GF DK  PN+V  L K+LYGLKQA RAW+    +YL T+GFV S  D SLF+     S+ Y L+YVDDI++TG D   +    + L+  F + D 
Subjt:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL

Query:  GPLKYFLGLEIQSNP
          L YFLG+E +  P
Subjt:  GPLKYFLGLEIQSNP

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE25.2e-2138.81Show/hide
Query:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL
        M+QP GF DK  P++V  L K++YGLKQA RAW+    +YL T+GFV S  D SLF+     S+ Y L+YVDDI++TG D + +    + L+  F + + 
Subjt:  MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDL

Query:  GPLKYFLGLEIQSNPPLMAYLLTKLNISMISSTH
          L YFLG+E +  P  +     +  + +++ T+
Subjt:  GPLKYFLGLEIQSNPPLMAYLLTKLNISMISSTH

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.9e-1946.09Show/hide
Query:  MAQPTGFQ----DKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFK
        M  P G+     D   PN V  L KS+YGLKQA R WF +F+  L   GFV S  D + F++   +     L+YVDDII+   +   +  LK+QL   FK
Subjt:  MAQPTGFQ----DKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFK

Query:  ISDLGPLKYFLGLEI
        + DLGPLKYFLGLEI
Subjt:  ISDLGPLKYFLGLEI

ATMG00810.1 DNA/RNA polymerases superfamily protein1.2e-0748Show/hide
Query:  YSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSNP
        Y LLYVDDI++TG     +++L  QL+  F + DLGP+ YFLG++I+++P
Subjt:  YSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLEIQSNP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCAACCTACTGGCTTCCAAGACAAAACATGTCCTAATCATGTGTCTCTCCTCCACAAGAGTCTTTATGGTCTGAAACAGGCCCATCGCGCTTGGTTTGAACGATT
TACATCTTATTTATTCACTTTGGGTTTTGTTGCGTCTACAGTTGATCCCTCATTATTCATTCGATCAGTCGAATCCTCTCTCACTTACTCACTTTTGTATGTAGATGACA
TCATTGTCACTGGACCTGACTATTTATACATTTCTGTTCTTAAAAACCAATTGGCTCTGGAATTCAAAATATCCGACCTTGGTCCTTTAAAGTACTTTCTTGGTCTCGAA
ATCCAATCCAATCCTCCATTGATGGCATATTTGCTAACCAAGCTAAATATCTCAATGATCTCCTCCACACATCGGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCAACCTACTGGCTTCCAAGACAAAACATGTCCTAATCATGTGTCTCTCCTCCACAAGAGTCTTTATGGTCTGAAACAGGCCCATCGCGCTTGGTTTGAACGATT
TACATCTTATTTATTCACTTTGGGTTTTGTTGCGTCTACAGTTGATCCCTCATTATTCATTCGATCAGTCGAATCCTCTCTCACTTACTCACTTTTGTATGTAGATGACA
TCATTGTCACTGGACCTGACTATTTATACATTTCTGTTCTTAAAAACCAATTGGCTCTGGAATTCAAAATATCCGACCTTGGTCCTTTAAAGTACTTTCTTGGTCTCGAA
ATCCAATCCAATCCTCCATTGATGGCATATTTGCTAACCAAGCTAAATATCTCAATGATCTCCTCCACACATCGGGAATGA
Protein sequenceShow/hide protein sequence
MAQPTGFQDKTCPNHVSLLHKSLYGLKQAHRAWFERFTSYLFTLGFVASTVDPSLFIRSVESSLTYSLLYVDDIIVTGPDYLYISVLKNQLALEFKISDLGPLKYFLGLE
IQSNPPLMAYLLTKLNISMISSTHRE