CuGenDBv2

Gene ID	Cmc01g0013191
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	BED-type domain-containing protein
Genome location	CMiso1.1chr01:9768208..9768606
RNA-Seq Expression	Cmc01g0013191
Synteny	Cmc01g0013191
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0041802.1 hypothetical protein E6C27_scaffold67G001750 [Cucumis melo var. makuwa]

2.0e-54

87.9

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Query:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA
        MGYIYE MDRAKEAIAKSFNNNEEKYKDIF IIDRRW+LQLHRPLHA GYYLNPSF+Y N +IQEDDEIV GLYSCITKMVASLDIQDKILAELSKYKRA
Subjt:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA

Query:  EALFGQPLAIRQMDKISPCKFQKN
        EALFGQPLAIRQ DKISP ++  N
Subjt:  EALFGQPLAIRQMDKISPCKFQKN

KAA0050353.1 hypothetical protein E6C27_scaffold88G00840 [Cucumis melo var. makuwa]

2.0e-54

87.9

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Query:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA
        MGYIYE MDRAKEAIAKSFNNNEEKYKDIF IIDRRW+LQLHRPLHA GYYLNPSF+Y N +IQEDDEIV GLYSCITKMVASLDIQDKILAELSKYKRA
Subjt:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA

Query:  EALFGQPLAIRQMDKISPCKFQKN
        EALFGQPLAIRQ DKISP ++  N
Subjt:  EALFGQPLAIRQMDKISPCKFQKN

KAA0062060.1 hypothetical protein E6C27_scaffold89G004020 [Cucumis melo var. makuwa]

2.0e-54

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Query:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA
        MGYIYE MDRAKEAIAKSFNNNEEKYKDIF II RRW+LQLHRPLHA GYYLNPSF+Y N +IQEDDEIV GLYSCITKMVASLD+QDKILAELSKYKRA
Subjt:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA

Query:  EALFGQPLAIRQMDKISPCKFQKND
        EALFGQPLAIRQ DKISP KFQ  D
Subjt:  EALFGQPLAIRQMDKISPCKFQKND

KAA0068068.1 hypothetical protein E6C27_scaffold238G00160 [Cucumis melo var. makuwa]

2.0e-54

87.9

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Query:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA
        MGYIYE MDRAKEAIAKSFNNNEEKYKDIF IIDRRW+LQLHRPLHA GYYLNPSF+Y N +IQEDDEIV GLYSCITKMVASLDIQDKILAELSKYKRA
Subjt:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA

Query:  EALFGQPLAIRQMDKISPCKFQKN
        EALFGQPLAIRQ DKISP ++  N
Subjt:  EALFGQPLAIRQMDKISPCKFQKN

TYK04958.1 hypothetical protein E5676_scaffold143G001770 [Cucumis melo var. makuwa]

2.0e-54

87.9

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Query:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA
        MGYIYE MDRAKEAIAKSFNNNEEKYKDIF IIDRRW+LQLHRPLHA GYYLNPSF+Y N +IQEDDEIV GLYSCITKMVASLDIQDKILAELSKYKRA
Subjt:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA

Query:  EALFGQPLAIRQMDKISPCKFQKN
        EALFGQPLAIRQ DKISP ++  N
Subjt:  EALFGQPLAIRQMDKISPCKFQKN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TY62 BED-type domain-containing protein

9.5e-55

87.9

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Query:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA
        MGYIYE MDRAKEAIAKSFNNNEEKYKDIF IIDRRW+LQLHRPLHA GYYLNPSF+Y N +IQEDDEIV GLYSCITKMVASLDIQDKILAELSKYKRA
Subjt:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA

Query:  EALFGQPLAIRQMDKISPCKFQKN
        EALFGQPLAIRQ DKISP ++  N
Subjt:  EALFGQPLAIRQMDKISPCKFQKN

A0A5A7U370 Uncharacterized protein

9.5e-55

87.9

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Query:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA
        MGYIYE MDRAKEAIAKSFNNNEEKYKDIF IIDRRW+LQLHRPLHA GYYLNPSF+Y N +IQEDDEIV GLYSCITKMVASLDIQDKILAELSKYKRA
Subjt:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA

Query:  EALFGQPLAIRQMDKISPCKFQKN
        EALFGQPLAIRQ DKISP ++  N
Subjt:  EALFGQPLAIRQMDKISPCKFQKN

A0A5A7V434 BED-type domain-containing protein

9.5e-55

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Query:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA
        MGYIYE MDRAKEAIAKSFNNNEEKYKDIF II RRW+LQLHRPLHA GYYLNPSF+Y N +IQEDDEIV GLYSCITKMVASLD+QDKILAELSKYKRA
Subjt:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA

Query:  EALFGQPLAIRQMDKISPCKFQKND
        EALFGQPLAIRQ DKISP KFQ  D
Subjt:  EALFGQPLAIRQMDKISPCKFQKND

A0A5A7VJR4 BED-type domain-containing protein

9.5e-55

87.9

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Query:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA
        MGYIYE MDRAKEAIAKSFNNNEEKYKDIF IIDRRW+LQLHRPLHA GYYLNPSF+Y N +IQEDDEIV GLYSCITKMVASLDIQDKILAELSKYKRA
Subjt:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA

Query:  EALFGQPLAIRQMDKISPCKFQKN
        EALFGQPLAIRQ DKISP ++  N
Subjt:  EALFGQPLAIRQMDKISPCKFQKN

A0A5D3C113 Uncharacterized protein

9.5e-55

87.9

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Query:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA
        MGYIYE MDRAKEAIAKSFNNNEEKYKDIF IIDRRW+LQLHRPLHA GYYLNPSF+Y N +IQEDDEIV GLYSCITKMVASLDIQDKILAELSKYKRA
Subjt:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA

Query:  EALFGQPLAIRQMDKISPCKFQKN
        EALFGQPLAIRQ DKISP ++  N
Subjt:  EALFGQPLAIRQMDKISPCKFQKN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G13030.1 hAT transposon superfamily protein

5.2e-21

38.84

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Query:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA
        +GY+Y+ MD  KE+IA+ FN+  + YK ++ +ID  W   LH PLHA GY+LNP+ FY ++N   D E+V GL S +  MV    +Q KI  ++  Y+  
Subjt:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA

Query:  EALFGQPLAIRQMDKISPCKF
        +  F +     Q+  ISP ++
Subjt:  EALFGQPLAIRQMDKISPCKF

AT3G13030.2 hAT transposon superfamily protein

5.2e-21

38.84

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Query:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA
        +GY+Y+ MD  KE+IA+ FN+  + YK ++ +ID  W   LH PLHA GY+LNP+ FY ++N   D E+V GL S +  MV    +Q KI  ++  Y+  
Subjt:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA

Query:  EALFGQPLAIRQMDKISPCKF
        +  F +     Q+  ISP ++
Subjt:  EALFGQPLAIRQMDKISPCKF

AT3G13030.3 hAT transposon superfamily protein

5.2e-21

38.84

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Query:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA
        +GY+Y+ MD  KE+IA+ FN+  + YK ++ +ID  W   LH PLHA GY+LNP+ FY ++N   D E+V GL S +  MV    +Q KI  ++  Y+  
Subjt:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA

Query:  EALFGQPLAIRQMDKISPCKF
        +  F +     Q+  ISP ++
Subjt:  EALFGQPLAIRQMDKISPCKF

AT4G15020.1 hAT transposon superfamily

8.9e-21

43.8

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Query:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA
        MGY+Y  + RAK+AI K+   N E Y   + IIDR W+ Q H PL A G++LNP  FY N+N +   E++  +  CI ++V    IQDKI+ EL+ YK A
Subjt:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA

Query:  EALFGQPLAIRQMDKISPCKF
          +FG+ LAIR  D + P ++
Subjt:  EALFGQPLAIRQMDKISPCKF

AT5G33406.1 hAT dimerisation domain-containing protein / transposase-related

2.5e-31

52.07

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Query:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA
        MGYIY  MD+AKE I KSF   EE YK  F IIDRRW +QLHRPLHA GYYLNP F Y   +    +E++ G   C+ ++V  ++ QDKI+ EL  +K+A
Subjt:  MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRA

Query:  EALFGQPLAIRQMDKISPCKF
          LFG P+AIR   K+SP ++
Subjt:  EALFGQPLAIRQMDKISPCKF

Sequences

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CDS sequence

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ATGGGATATATTTATGAGGTCATGGATAGAGCTAAAGAAGCTATTGCTAAGTCGTTCAATAATAATGAAGAAAAATACAAGGACATTTTCATCATAATTGATAGAAGATG
GAAGCTTCAGTTGCATCGTCCTCTGCATGCAGTGGGGTATTATTTAAACCCGTCATTCTTTTATTTGAATTCTAACATCCAAGAGGATGATGAAATAGTTTATGGGCTAT
ACTCATGTATAACAAAAATGGTTGCTTCATTAGACATCCAAGACAAAATACTTGCAGAACTAAGCAAGTATAAGAGAGCTGAAGCATTGTTTGGACAACCTTTAGCAATC
AGACAAATGGACAAAATATCTCCATGTAAATTTCAAAAAAACGATCAGTCGATTACTCAACAATACTAA

mRNA sequence

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Protein sequence

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MGYIYEVMDRAKEAIAKSFNNNEEKYKDIFIIIDRRWKLQLHRPLHAVGYYLNPSFFYLNSNIQEDDEIVYGLYSCITKMVASLDIQDKILAELSKYKRAEALFGQPLAI
RQMDKISPCKFQKNDQSITQQY

Cmc01g0013191 (gene) of Melon (Charmono) v1.1 genome