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Cmc01g0013491 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0013491
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag protease polyprotein
Genome locationCMiso1.1chr01:10049182..10062939
RNA-Seq ExpressionCmc01g0013491
SyntenyCmc01g0013491
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031900.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-3585.87Show/hide
Query:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
        +GTAWWE  ER+L GDV QIT +QFKESFYAKFFSASLRDAKRQEFLNLEQGD TVE YDA+FDMLSRFASEMIA E ARADKFVRGLRLDI
Subjt:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
KAA0032617.1 gag protease polyprotein [Cucumis melo var. makuwa]5.1e-3685.87Show/hide
Query:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
        +GTAWWE  ER+L GDV QIT +QFKESFYAKFFSASLRDAKRQEFLNLEQGD TVEHYDA+FDMLSRFA EMIA E ARADKFVRGLRLDI
Subjt:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
KAA0046984.1 gag protease polyprotein [Cucumis melo var. makuwa]8.6e-3685.87Show/hide
Query:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
        +GTAWWE IER+LEGDV QIT +QFKESFYAKFFS SLRDAKRQEFLNLEQGD TVE YDA+FDMLSRFA EMIA E ARADKFVRGLRLDI
Subjt:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
KAA0048256.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.9e-4195.51Show/hide
Query:  MHHKGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVR
        MHHKGTAWWEMIERIL GDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHY  DFDMLSRFASEMIANEIAR DKFVR
Subjt:  MHHKGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVR
TYK04801.1 gag protease polyprotein [Cucumis melo var. makuwa]8.6e-3685.87Show/hide
Query:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
        +GTAWWE IER+LEGDV QIT +QFKESFYAKFFS SLRDAKRQEFLNLEQGD TVE YDA+FDMLSRFA EMIA E ARADKFVRGLRLDI
Subjt:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
TrEMBL top hitse value%identityAlignment
A0A5A7SMB7 Reverse transcriptase5.5e-3685.87Show/hide
Query:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
        +GTAWWE  ER+L GDV QIT +QFKESFYAKFFSASLRDAKRQEFLNLEQGD TVE YDA+FDMLSRFASEMIA E ARADKFVRGLRLDI
Subjt:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
A0A5A7STC8 Gag protease polyprotein2.4e-3685.87Show/hide
Query:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
        +GTAWWE  ER+L GDV QIT +QFKESFYAKFFSASLRDAKRQEFLNLEQGD TVEHYDA+FDMLSRFA EMIA E ARADKFVRGLRLDI
Subjt:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
A0A5A7TVJ4 Gag protease polyprotein4.2e-3685.87Show/hide
Query:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
        +GTAWWE IER+LEGDV QIT +QFKESFYAKFFS SLRDAKRQEFLNLEQGD TVE YDA+FDMLSRFA EMIA E ARADKFVRGLRLDI
Subjt:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
A0A5A7U200 Ty3-gypsy retrotransposon protein4.3e-4195.51Show/hide
Query:  MHHKGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVR
        MHHKGTAWWEMIERIL GDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHY  DFDMLSRFASEMIANEIAR DKFVR
Subjt:  MHHKGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVR
A0A5D3BYN5 Gag protease polyprotein4.2e-3685.87Show/hide
Query:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
        +GTAWWE IER+LEGDV QIT +QFKESFYAKFFS SLRDAKRQEFLNLEQGD TVE YDA+FDMLSRFA EMIA E ARADKFVRGLRLDI
Subjt:  KGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCACAAAGGCACCGCCTGGTGGGAGATGATAGAGAGGATTCTAGAGGGCGACGTGTGTCAGATCACCGGGGAGCAGTTCAAGGAGAGTTTCTACGCGAAA
TTCTTCTCTGCTAGTCTGAGAGATGCCAAGCGGCAAGAGTTTCTAAACCTGGAGCAAGGTGATAGGACCGTGGAGCACTATGATGCAGATTTTGACATGTTGTCC
CGCTTTGCTTCTGAGATGATAGCGAATGAGATTGCCAGGGCCGATAAGTTTGTTAGAGGTCTCAGGCTAGATATCTAG
mRNA sequenceShow/hide mRNA sequence
CTTTGCGCGCCCTCCATCTCTCTTCTTCTCCTTCCTTCTCCACCCGTGACCAGCGCCGCCCACGCCGTTTTCTCTTTGTTTTTTTTTCTTCTTCGTCCGGCCGAA
CTTCCTCTTTTCCGATCAAGCCGTCGTCTATCTCCATCTCTGTCGCCCAAGTCGTAGCTCTGCAAAGTCGCGTTGTTCAGATCTAAGCCGCGCGGTTCGTGGAAG
CTCCATTTACCTTCGCCGTTCGTTCAGTCAAAGCCGCCAATACTCCATCCGACGTCATTCCTCTTCATCAGCCGAGCAGTCGTCTCCAACTCATCGTCGTCGCGT
CTTAGGTAGCCGCCGCTGTTCGTCCCCGCGAAGCCCTTCGCCGAGCCGCAGCCGGTCTTCCAGCCGTGCGTTGAGCCGAACCCGAGCCACCAGCTTTAGTCCCAA
GCCGCGCGCACCGATCTATTCCTTGTTGAGTCGTTCAAGCCGTTTTCCTCTATTAGCGAGCGGTGTGAGCCTAGCCAAGCTTCATAACTTATTTAAGCCAACCCT
TGGTGCTATCGGAGGAGTAACATTGAATTATTGGATTTCACATCGAGATTGGAGTGGGTTTAAGTCTCCATAGTTTGGGTAAAGGTAACGTGTGAGGCAGACCGA
CGAGAGGCAAGAAGGATTCGTGAATGCCATACGGGATGTCTAATTTAATGCTTTCGTTAGACGTTTCTTTTTGTTTTGTTTCATTTTGTTATTTTAAATTGTTTT
GAGGATCGGAGTGAGTTAAATTTTAGGATATTTAATTATTTCGTTTGATAGTTTCCTAGGTGGTTACGTGAACATTTGAATTTTATTTTAAACTGGGCCCGAAAA
CACTTTTTCTATAGTTTTGGATGTTATTTGAATTTAAACAAAATTTATGAAACTACTTTTTGTTTTGGTGACGTGTCTTGATAGTGAAGTAATGATCTCAGCTTA
GTTTAAAAAGTTAGGTCGTTATAGTTTGTATCAGAGCCTAAGTTTGAGGTTCTATAGACTGACTTATGTCTATGCTTTGTGTCCCTATGGCTAGAATGATCCTTT
GCCACTTGTCAGGTATGCTTTCATGAATTATATGTATAAATCTATATGTATGACTTTGCACAAGTTAAACTATGAAGTGAATTATTGTTTGAGACTAAAGGAATT
ACTGGTGGTTATTAGGAAAATGATACCAAGAAGAGGTGCTCGTAGAGGTGGTCGAGGAGGTTGGAGAAGAGAAGTAGGGCGTGTCCAACCAAAAGTGTAGTCTGT
AGCTCAAGCTACCAATCATGCTGCACCGTTCACTCATGCAGACCTTGCTGCTATGGAGTAGAGGTTCATTCGATGGGTCTTTAAAGAACCCACCAAGGCTCAAAT
GTGGTTGTTTTTCGTGGAAACCATATTTCGTATATGAAGTGCCCTAACAATCAGAAGGTTCAATGCACCACAAAGGCACCGCCTGGTGGGAGATGATAGAGAGGA
TTCTAGAGGGCGACGTGTGTCAGATCACCGGGGAGCAGTTCAAGGAGAGTTTCTACGCGAAATTCTTCTCTGCTAGTCTGAGAGATGCCAAGCGGCAAGAGTTTC
TAAACCTGGAGCAAGGTGATAGGACCGTGGAGCACTATGATGCAGATTTTGACATGTTGTCCCGCTTTGCTTCTGAGATGATAGCGAATGAGATTGCCAGGGCCG
ATAAGTTTGTTAGAGGTCTCAGGCTAGATATCTAGGGCCTCATTCGAGCCTTCCGACCAGCCACCCACGCTGATACACTGCATTTGGCAGTGGATATCAATTTAC
AAAAGAGGGCTAATTAGTCTAAGATATCAGGAAAAGGGTCGACCTTAAGACAGAAAAGGAAGGTTGAGCAGCAATCTATTATAGTGTTGTAGAGGAATGTGAGAT
CATGTGGGAAGCACCATTTGGAAAGTTGTTAAAGAGAAGCCATTATGTACCACCTGTGGGAAGCACCATCTGGGTCGTTTATTTGGGATTAGAACTTGTTTCAAG
TGGAAGCAAGAGGGGCATACAGCTGGCAGATGCCCTATGAGGCTTACTGAGGTTGTGCAGAACTAGGGAGCAGGTGCACTATAGAAGGGTAAGGTCTTTGCTACG
AATAAGTTTGAGGTCGAGAAAGCAGGCACTGTAGTGGCAGCAATGACATGTGAGCATGGTAGTTGCTCTCAGTTTAAACTCCTTGCAAGTGCACTCTTGAGTATG
AAGATTTACGACCTCTTCCTTATCTAATTCTTTGACATGGAATTGGTAACAGTCAATTGGGTTGATCTTCAATGTCAAAGCTTGTTCTTATTTTTTTTGTAGAAC
TAATTTTTCCCATTTGTTCAATGTAGATATCACTTTAATGTCTTCTTCTCGACACTCTCAAAACCAACAATGTAGCAGAGCTCTCACATGTTCAAGGAATGAACC
AATAGATAAATCTCTGGGTTCTTTCAATATAAAATTCATGGACTCTGTTATATTTGTTGTTATCATGTTATAGTGTCTTCCTAGGCAGTGAACACGAGACCACCA
TGCTATTCCGACGTTGTTTAAATATTTTCTTGAACCATTAGGATATGTAAGAATACTTCTCCACGTTTCTAGAAATGTTGATTCATGATATGTTCTCAAAGCATT
GTAAAACAAAGTA
Protein sequenceShow/hide protein sequence
MHHKGTAWWEMIERILEGDVCQITGEQFKESFYAKFFSASLRDAKRQEFLNLEQGDRTVEHYDADFDMLSRFASEMIANEIARADKFVRGLRLDI