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Cmc01g0014211 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0014211
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr01:11098141..11098740
RNA-Seq ExpressionCmc01g0014211
SyntenyCmc01g0014211
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031744753.1 uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]1.2e-9085.64Show/hide
Query:  SVLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLS
        SVLGSGTIHLTPSFSLSSVL+LPNLS+NLIS SQLTHDLN +V+FF  YCLFQD VTKKIIGRGYE GGLYLF+HQV Q VACPVVPSPFEVH RLGH S
Subjt:  SVLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLS

Query:  LFVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF
        LFVLKKLYP FRSLSSLNC SC+FAKFHRLS SPRV+KRA APFELVHS+IWGPCPVVSQT FRYFVTF+DDHS LTWLYLMKNRS+LLSHF +F
Subjt:  LFVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF

XP_031744754.1 uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus]2.2e-6585.42Show/hide
Query:  FQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNI
        F+D VTKKIIGRGYE GGLYLF+HQV Q VACPVVPSPFEVH RLGH SLFVLKKLYP FRSLSSLNC SC+FAKFHRLS SPRV+KRA APFELVHS+I
Subjt:  FQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNI

Query:  WGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF
        WGPCPVVSQT FRYFVTF+DDHS LTWLYLMKNRS+LLSHF +F
Subjt:  WGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF

XP_031744755.1 uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus]2.2e-6585.42Show/hide
Query:  FQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNI
        F+D VTKKIIGRGYE GGLYLF+HQV Q VACPVVPSPFEVH RLGH SLFVLKKLYP FRSLSSLNC SC+FAKFHRLS SPRV+KRA APFELVHS+I
Subjt:  FQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNI

Query:  WGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF
        WGPCPVVSQT FRYFVTF+DDHS LTWLYLMKNRS+LLSHF +F
Subjt:  WGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF

XP_031744756.1 uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus]2.2e-6585.42Show/hide
Query:  FQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNI
        F+D VTKKIIGRGYE GGLYLF+HQV Q VACPVVPSPFEVH RLGH SLFVLKKLYP FRSLSSLNC SC+FAKFHRLS SPRV+KRA APFELVHS+I
Subjt:  FQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNI

Query:  WGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF
        WGPCPVVSQT FRYFVTF+DDHS LTWLYLMKNRS+LLSHF +F
Subjt:  WGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF

XP_031744758.1 uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus]3.7e-6586.01Show/hide
Query:  QDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIW
        QD VTKKIIGRGYE GGLYLF+HQV Q VACPVVPSPFEVH RLGH SLFVLKKLYP FRSLSSLNC SC+FAKFHRLS SPRV+KRA APFELVHS+IW
Subjt:  QDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIW

Query:  GPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF
        GPCPVVSQT FRYFVTF+DDHS LTWLYLMKNRS+LLSHF +F
Subjt:  GPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF

TrEMBL top hitse value%identityAlignment
A0A438DZQ8 Retrovirus-related Pol polyprotein from transposon TNT 1-943.9e-6059.79Show/hide
Query:  VLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSL
        + GSGT+  T S +LSSVL LPNL++NLIS+S+LT +LN  V FFPD+C+FQD +TK+  G+G+   GLY+ +  V + VAC    SP E H RLGH SL
Subjt:  VLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSL

Query:  FVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF
         VLKKL P F +L SL+C SC FAK HR SL PR+NKR  + FELVHS++WGPCPV SQT FRYFVTF+DD S +TW+Y MKNRS++ SHF +F
Subjt:  FVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF

A0A438GAA6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-6060.31Show/hide
Query:  VLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSL
        + GSGT+  T S +LSSVL LPNL++NLIS+S+LT +LN  V FFPD+C+FQD +TK+  G+G+   GLY+ +  V + VAC    SP E H RLGH SL
Subjt:  VLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSL

Query:  FVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF
         VLKKL P F +L SL+C SC FAK HR SL PR+NKRA + FELVHS++WGPCPV SQT FRYFVTF+DD S +TW+Y MKNRS++ SHF +F
Subjt:  FVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF

A0A438H537 Retrovirus-related Pol polyprotein from transposon TNT 1-946.0e-6160.82Show/hide
Query:  VLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSL
        + GSGT+  T S +LSSVL LPNL++NLIS+S+LT DLN  V FFPD+C+FQD +TK+  G+G+   GLY+ +  V + VAC    SP E H RLGH SL
Subjt:  VLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSL

Query:  FVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF
         VLKKL P F +L SL+C SC FAK HR SL PR+NKRA + FELVHS++WGPCPV SQT FRYFVTF+DD S +TW+Y MKNRS++ SHF +F
Subjt:  FVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF

A5AWD0 Uncharacterized protein1.3e-6060.31Show/hide
Query:  VLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSL
        + GSGT+  T S +LSSVL LPNL++NLIS+S+LT +LN  V FFPD+C+FQD +TK+  G+G+   GLY+ +  V + VAC    SP E H RLGH SL
Subjt:  VLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSL

Query:  FVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF
         VLKKL P F +L SL+C SC FAK HR SL PR+NKRA + FELVHS++WGPCPV SQT FRYFVTF+DD S +TW+Y MKNRS++ SHF +F
Subjt:  FVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF

B0FBS2 Uncharacterized protein1.3e-6060.31Show/hide
Query:  VLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSL
        + GSGT+  T S +LSSVL LPNL++NLIS+S+LT +LN  V FFPD+C+FQD +TK+  G+G+   GLY+ +  V + VAC    SP E H RLGH SL
Subjt:  VLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSL

Query:  FVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF
         VLKKL P F +L SL+C SC FAK HR SL PR+NKRA + FELVHS++WGPCPV SQT FRYFVTF+DD S +TW+Y MKNRS++ SHF +F
Subjt:  FVLKKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.9e-0433.33Show/hide
Query:  HYRLGHLS---LFVLKKLYPVFRSLSSLN--------CGSCKFAKFHRLSLSPRVNK-RASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDD--HSCLTW
        H R GH+S   L  +K+   +F   S LN        C  C   K  RL      +K     P  +VHS++ GP   V+  +  YFV F+D   H C+T 
Subjt:  HYRLGHLS---LFVLKKLYPVFRSLSSLN--------CGSCKFAKFHRLSLSPRVNK-RASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDD--HSCLTW

Query:  LYLMKNRSKLLSHFVSFMLK
         YL+K +S + S F  F+ K
Subjt:  LYLMKNRSKLLSHFVSFMLK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.5e-1128.88Show/hide
Query:  LSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQ--VVACPVVPSPFEVHYRLGHLS-----LFVLKKLY
        L  V ++P+L  NLIS   L  D          + L +  +   +I +G   G LY  N ++ Q  + A     S    H R+GH+S     +   K L 
Subjt:  LSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQ--VVACPVVPSPFEVHYRLGHLS-----LFVLKKLY

Query:  PVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF
           +  +   C  C F K HR+S      ++ +   +LV+S++ GP  + S    +YFVTFIDD S   W+Y++K + ++   F  F
Subjt:  PVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.1e-1430.21Show/hide
Query:  SLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEV----HYRLGHLSLFVLKKLYPV
        +L ++LY+PN+  NLIS+ +L +     V FFP     +D  T   + +G     LY +     Q V+    PS        H RLGH +  +L  +   
Subjt:  SLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEV----HYRLGHLSLFVLKKLYPV

Query:  FRSLSSLN-------CGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF
        + SLS LN       C  C   K +++  S +    ++ P E ++S++W   P++S  N+RY+V F+D  +  TWLY +K +S++   F++F
Subjt:  FRSLSSLN-------CGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.3e-1632.12Show/hide
Query:  SFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLY---LFNHQVQQVVACPVVPSPFEV-HYRLGHLSLFVLKKL-
        S  L+ VLY+PN+  NLIS+ +L +     V FFP     +D  T   + +G     LY   + + Q   + A P   +     H RLGH SL +L  + 
Subjt:  SFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLY---LFNHQVQQVVACPVVPSPFEV-HYRLGHLSLFVLKKL-

Query:  ----YPVFR-SLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF
             PV   S   L+C  C   K H++  S      +S P E ++S++W   P++S  N+RY+V F+D  +  TWLY +K +S++   F+ F
Subjt:  ----YPVFR-SLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTTCTGGGATCTGGCACTATTCATCTTACCCCATCATTTTCTCTGTCTTCTGTGTTATATTTGCCTAACTTATCCTATAATTTAATTTCTATTAGTCAA
CTTACTCATGACCTTAATTCTATTGTCTTGTTCTTTCCTGATTATTGCTTGTTTCAAGATTGTGTGACGAAGAAGATTATTGGTAGAGGATATGAGTTGGGAGGC
CTTTATCTCTTTAATCACCAAGTACAGCAAGTTGTGGCGTGTCCTGTCGTTCCTTCTCCCTTTGAAGTTCATTATCGCTTGGGTCATCTATCTTTGTTCGTGTTG
AAGAAACTTTATCCCGTATTTAGGTCTTTGTCCTCTTTAAATTGTGGTTCGTGTAAATTTGCTAAATTTCATCGTCTTAGTTTGAGTCCTCGAGTCAATAAACGA
GCAAGTGCTCCATTTGAGTTAGTTCATTCTAATATTTGGGGTCCATGTCCAGTTGTATCTCAAACAAACTTTCGTTATTTTGTTACATTTATTGACGATCATTCT
TGTCTAACTTGGTTATATTTAATGAAAAATCGTTCTAAGTTATTATCTCATTTTGTGTCTTTCATGCTTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTTCTGGGATCTGGCACTATTCATCTTACCCCATCATTTTCTCTGTCTTCTGTGTTATATTTGCCTAACTTATCCTATAATTTAATTTCTATTAGTCAA
CTTACTCATGACCTTAATTCTATTGTCTTGTTCTTTCCTGATTATTGCTTGTTTCAAGATTGTGTGACGAAGAAGATTATTGGTAGAGGATATGAGTTGGGAGGC
CTTTATCTCTTTAATCACCAAGTACAGCAAGTTGTGGCGTGTCCTGTCGTTCCTTCTCCCTTTGAAGTTCATTATCGCTTGGGTCATCTATCTTTGTTCGTGTTG
AAGAAACTTTATCCCGTATTTAGGTCTTTGTCCTCTTTAAATTGTGGTTCGTGTAAATTTGCTAAATTTCATCGTCTTAGTTTGAGTCCTCGAGTCAATAAACGA
GCAAGTGCTCCATTTGAGTTAGTTCATTCTAATATTTGGGGTCCATGTCCAGTTGTATCTCAAACAAACTTTCGTTATTTTGTTACATTTATTGACGATCATTCT
TGTCTAACTTGGTTATATTTAATGAAAAATCGTTCTAAGTTATTATCTCATTTTGTGTCTTTCATGCTTAAATAA
Protein sequenceShow/hide protein sequence
MSVLGSGTIHLTPSFSLSSVLYLPNLSYNLISISQLTHDLNSIVLFFPDYCLFQDCVTKKIIGRGYELGGLYLFNHQVQQVVACPVVPSPFEVHYRLGHLSLFVL
KKLYPVFRSLSSLNCGSCKFAKFHRLSLSPRVNKRASAPFELVHSNIWGPCPVVSQTNFRYFVTFIDDHSCLTWLYLMKNRSKLLSHFVSFMLK