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Cmc01g0014231 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0014231
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCMiso1.1chr01:11100095..11100433
RNA-Seq ExpressionCmc01g0014231
SyntenyCmc01g0014231
Gene Ontology termsGO:0007165 - signal transduction (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031744753.1 uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]6.2e-4185.85Show/hide
Query:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM
        M+KST D+S+FYRRS+ GIVLLVVYVDDIVITGNDALGISSLKTFLQG+F  KD GQLKYFLG+EVMRSKKGIYLSQRKYVLDLLSET KL AK +GTPM
Subjt:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM

Query:  MPNQQL
        MPNQQL
Subjt:  MPNQQL

XP_031744754.1 uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus]6.2e-4185.85Show/hide
Query:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM
        M+KST D+S+FYRRS+ GIVLLVVYVDDIVITGNDALGISSLKTFLQG+F  KD GQLKYFLG+EVMRSKKGIYLSQRKYVLDLLSET KL AK +GTPM
Subjt:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM

Query:  MPNQQL
        MPNQQL
Subjt:  MPNQQL

XP_031744755.1 uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus]6.2e-4185.85Show/hide
Query:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM
        M+KST D+S+FYRRS+ GIVLLVVYVDDIVITGNDALGISSLKTFLQG+F  KD GQLKYFLG+EVMRSKKGIYLSQRKYVLDLLSET KL AK +GTPM
Subjt:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM

Query:  MPNQQL
        MPNQQL
Subjt:  MPNQQL

XP_031744756.1 uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus]6.2e-4185.85Show/hide
Query:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM
        M+KST D+S+FYRRS+ GIVLLVVYVDDIVITGNDALGISSLKTFLQG+F  KD GQLKYFLG+EVMRSKKGIYLSQRKYVLDLLSET KL AK +GTPM
Subjt:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM

Query:  MPNQQL
        MPNQQL
Subjt:  MPNQQL

XP_031744758.1 uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus]6.2e-4185.85Show/hide
Query:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM
        M+KST D+S+FYRRS+ GIVLLVVYVDDIVITGNDALGISSLKTFLQG+F  KD GQLKYFLG+EVMRSKKGIYLSQRKYVLDLLSET KL AK +GTPM
Subjt:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM

Query:  MPNQQL
        MPNQQL
Subjt:  MPNQQL

TrEMBL top hitse value%identityAlignment
A0A438FSA8 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-3168.87Show/hide
Query:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM
        M K   D+S+FY++S  GI+LLVVYVDDIVITGND  GIS+LKTF+  +F  KD G+LKYFLG+EV RSKKG++LSQRKYVLDLL ET K+EAKL  TPM
Subjt:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM

Query:  MPNQQL
        +PN QL
Subjt:  MPNQQL

A0A438GE68 Retrovirus-related Pol polyprotein from transposon RE19.6e-3266.67Show/hide
Query:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM
        M KS  D+S+FYR+S NGI+LL++YVDDIVITGND  GISSLK F+  +F  KD G+LKYFLG+EV RSK+GI+LSQRKYVLDLL+ET K+EAK   TPM
Subjt:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM

Query:  MPNQQLER
        +PN  L +
Subjt:  MPNQQLER

A0A5D3C204 Putative mitochondrial protein1.8e-3883.96Show/hide
Query:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM
        MQ ST D+S+FYRRSDNGIVLLVVYVDD VITGNDA GISSLKTFLQG F  KD GQLKYFLG+EVMRSKK IYLSQRKYVLDLLSET KL AK +GT M
Subjt:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM

Query:  MPNQQL
        MPNQQL
Subjt:  MPNQQL

A0A6P6SB73 uncharacterized protein LOC1136891062.1e-3168.52Show/hide
Query:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM
        MQKS  D+SIFY++S+ GI+LLVVYVDDIVITGNDA  ISSLKTFL  +F  K+ G LKYFLG+E+ +S+KGI+LSQRKYVLDLLSET KL AK    PM
Subjt:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM

Query:  MPNQQLER
        +PN QL +
Subjt:  MPNQQLER

A5BSK6 Integrase catalytic domain-containing protein2.1e-3167.59Show/hide
Query:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM
        M KS  D+S+FYR+S NGI+LLVVYVDDIVITG+D  GISSLK F+  +F  KD G+LKYFLG+EV RSK+GI+LSQRKYVLDLL+ET K+EAK   TPM
Subjt:  MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM

Query:  MPNQQLER
        +PN  L +
Subjt:  MPNQQLER

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.9e-0630.95Show/hide
Query:  NGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM
        N  + +++YVDD+VI   D   +++ K +L  +F   D  ++K+F+G+ +   +  IYLSQ  YV  +LS+          TP+
Subjt:  NGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-0832.73Show/hide
Query:  KSTPDYSIFYRR-SDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSK--KGIYLSQRKYVLDLLSETRKLEAKLNGTP
        K+  D  ++++R S+N  ++L++YVDD++I G D   I+ LK  L   F  KD G  +  LGM+++R +  + ++LSQ KY+  +L       AK   TP
Subjt:  KSTPDYSIFYRR-SDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSK--KGIYLSQRKYVLDLLSETRKLEAKLNGTP

Query:  MMPNQQLERR
        +  + +L ++
Subjt:  MMPNQQLERR

P92519 Uncharacterized mitochondrial protein AtMg008101.6e-0736.71Show/hide
Query:  LVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM
        L++YVDDI++TG+    ++ L   L   F  KD G + YFLG+++     G++LSQ KY   +L+    L+ K   TP+
Subjt:  LVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.2e-1645.63Show/hide
Query:  STPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPMMPN
        S  D S+F  +    IV ++VYVDDI+ITGND   + +    L  RF  KD  +L YFLG+E  R   G++LSQR+Y+LDLL+ T  + AK   TPM P+
Subjt:  STPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPMMPN

Query:  QQL
         +L
Subjt:  QQL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.6e-1543.69Show/hide
Query:  STPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPMMPN
        S  D S+F  +    I+ ++VYVDDI+ITGND + +      L  RF  K+   L YFLG+E  R  +G++LSQR+Y LDLL+ T  L AK   TPM  +
Subjt:  STPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPMMPN

Query:  QQL
         +L
Subjt:  QQL

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 85.6e-1642.57Show/hide
Query:  KSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPMMP
        +S  D++ F + +    + ++VYVDDI+I  N+   +  LK+ L+  F  +D G LKYFLG+E+ RS  GI + QRKY LDLL ET  L  K +  PM P
Subjt:  KSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPMMP

Query:  N
        +
Subjt:  N

ATMG00810.1 DNA/RNA polymerases superfamily protein1.1e-0836.71Show/hide
Query:  LVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM
        L++YVDDI++TG+    ++ L   L   F  KD G + YFLG+++     G++LSQ KY   +L+    L+ K   TP+
Subjt:  LVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAAGAGTACACCAGATTATTCTATTTTCTATCGCCGATCTGATAATGGTATAGTTTTACTAGTTGTATATGTTGATGATATTGTTATTACTGGAAATGATGCATT
GGGTATTTCGTCTCTCAAAACTTTCCTTCAAGGTCGATTTCTTAAGAAAGATTTTGGTCAATTGAAATATTTTTTGGGCATGGAAGTGATGAGAAGCAAGAAAGGTATTT
ATTTGTCTCAACGAAAATATGTACTTGATTTGTTGTCTGAGACAAGAAAATTAGAAGCCAAACTAAATGGTACTCCAATGATGCCGAATCAGCAACTTGAAAGAAGGAAA
ATTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGAAGAGTACACCAGATTATTCTATTTTCTATCGCCGATCTGATAATGGTATAGTTTTACTAGTTGTATATGTTGATGATATTGTTATTACTGGAAATGATGCATT
GGGTATTTCGTCTCTCAAAACTTTCCTTCAAGGTCGATTTCTTAAGAAAGATTTTGGTCAATTGAAATATTTTTTGGGCATGGAAGTGATGAGAAGCAAGAAAGGTATTT
ATTTGTCTCAACGAAAATATGTACTTGATTTGTTGTCTGAGACAAGAAAATTAGAAGCCAAACTAAATGGTACTCCAATGATGCCGAATCAGCAACTTGAAAGAAGGAAA
ATTATGTAA
Protein sequenceShow/hide protein sequence
MQKSTPDYSIFYRRSDNGIVLLVVYVDDIVITGNDALGISSLKTFLQGRFLKKDFGQLKYFLGMEVMRSKKGIYLSQRKYVLDLLSETRKLEAKLNGTPMMPNQQLERRK
IM