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Cmc01g0014341 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0014341
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
Genome locationCMiso1.1chr01:11259450..11260171
RNA-Seq ExpressionCmc01g0014341
SyntenyCmc01g0014341
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048191.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-8785.11Show/hide
Query:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQ---------NCLGAL
        MLRTRGGLEATQYVDVEEM AI LHIVAHDVKN+VARR+FARSD TVSRH NVVLNAVLR+HEILLKQPD VTHSCSHEKWRWFQ           + AL
Subjt:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQ---------NCLGAL

Query:  DGTHIKVNVSMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
        DGTHIKVNVSMSDHPRYRSRK DITTNVLG+CSQNGE+IFVMPGWEGSASDSRVLRDVVSRP GLKVPKGYYYLCDA YLN EGF AP
Subjt:  DGTHIKVNVSMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

KAA0050107.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.2e-9191.62Show/hide
Query:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV
        MLRT+GGLEATQYVDVEEMVAI LHIVAHDVKN+VARR+FARS ETVSRH N VLNAVLRLHEILLKQPDPVTHSCSHEK+RWFQNCLGAL GTHIKVNV
Subjt:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV

Query:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
        SMSD PRYRSRKGDITTNVLGVCSQNGE+IFVMPGWEGSASDSRVLRD VSRPT LKVPKGYYYLCDAGY NAEGF AP
Subjt:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-8788.27Show/hide
Query:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV
        MLRT+GGLEATQYVDVEEM+AI LHIVAHDVKN+V RR+FARS ETVSRH     NAVLRLHEILLKQPDPVT+SCSHEKWRWFQ CLGALDGTHIKVNV
Subjt:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV

Query:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
        SMSD PRYRSRKGDITTNVLGVC QNGE+IFVMPGWEGSASDSRVLRD VSR TGLKVPKGYYYLCDAGY NAEGF AP
Subjt:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

TYK08067.1 retrotransposon protein [Cucumis melo var. makuwa]4.8e-8084.36Show/hide
Query:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV
        MLRTRGGLEATQYVDVEEM AI LHIVAHDVKN+VARR+FARSD TVSRH NVVLNAVLR+HEILLKQPD VTHSC             ALDGTHIKVNV
Subjt:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV

Query:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
        SMSDHPRYRSRK DITTNVLG+CSQNGE+IFVMPGWEGSASDSRVLRDVVSRP GLKVPKGYYYLCDA YLN EGF AP
Subjt:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

XP_008463037.1 PREDICTED: uncharacterized protein LOC103501276 [Cucumis melo]3.8e-101100Show/hide
Query:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV
        MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV
Subjt:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV

Query:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
        SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
Subjt:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

TrEMBL top hitse value%identityAlignment
A0A1S3CJV8 uncharacterized protein LOC1035012761.8e-101100Show/hide
Query:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV
        MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV
Subjt:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV

Query:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
        SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
Subjt:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

A0A5A7U3R2 Retrotransposon protein8.9e-8885.11Show/hide
Query:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQ---------NCLGAL
        MLRTRGGLEATQYVDVEEM AI LHIVAHDVKN+VARR+FARSD TVSRH NVVLNAVLR+HEILLKQPD VTHSCSHEKWRWFQ           + AL
Subjt:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQ---------NCLGAL

Query:  DGTHIKVNVSMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
        DGTHIKVNVSMSDHPRYRSRK DITTNVLG+CSQNGE+IFVMPGWEGSASDSRVLRDVVSRP GLKVPKGYYYLCDA YLN EGF AP
Subjt:  DGTHIKVNVSMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

A0A5A7U6W3 Putative nuclease HARBI15.9e-9291.62Show/hide
Query:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV
        MLRT+GGLEATQYVDVEEMVAI LHIVAHDVKN+VARR+FARS ETVSRH N VLNAVLRLHEILLKQPDPVTHSCSHEK+RWFQNCLGAL GTHIKVNV
Subjt:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV

Query:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
        SMSD PRYRSRKGDITTNVLGVCSQNGE+IFVMPGWEGSASDSRVLRD VSRPT LKVPKGYYYLCDAGY NAEGF AP
Subjt:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

A0A5A7VG45 Retrotransposon protein2.0e-8788.27Show/hide
Query:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV
        MLRT+GGLEATQYVDVEEM+AI LHIVAHDVKN+V RR+FARS ETVSRH     NAVLRLHEILLKQPDPVT+SCSHEKWRWFQ CLGALDGTHIKVNV
Subjt:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV

Query:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
        SMSD PRYRSRKGDITTNVLGVC QNGE+IFVMPGWEGSASDSRVLRD VSR TGLKVPKGYYYLCDAGY NAEGF AP
Subjt:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

A0A5D3C7X6 Retrotransposon protein2.3e-8084.36Show/hide
Query:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV
        MLRTRGGLEATQYVDVEEM AI LHIVAHDVKN+VARR+FARSD TVSRH NVVLNAVLR+HEILLKQPD VTHSC             ALDGTHIKVNV
Subjt:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV

Query:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
        SMSDHPRYRSRK DITTNVLG+CSQNGE+IFVMPGWEGSASDSRVLRDVVSRP GLKVPKGYYYLCDA YLN EGF AP
Subjt:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein6.6e-1929.41Show/hide
Query:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPD-------PVTHSCSHEKWRWFQNCLGALDG
        ML+T   L+ T  + +EE VA+ L I  H+   +     F R+ ETV R    VL A   L    ++ P        P         W +F   +GA+DG
Subjt:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPD-------PVTHSCSHEKWRWFQNCLGALDG

Query:  THIKVNVSMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKG-YYYLCDAGYLNAEGFFAP
        TH+ V V       Y +R  + + N++ +C     + ++  G  GS  D+ VL+      +   +P    YYL D+GY N +G  AP
Subjt:  THIKVNVSMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKG-YYYLCDAGYLNAEGFFAP

AT5G28730.1 unknown protein1.5e-1030.94Show/hide
Query:  MLRTRGGLEATQYVDVEEMVAILLHIVA-HDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN
        +L  + GL+++  + ++E VAI L I A +D +  +A R F  + ET+ R  + VL A+ RL  +   +P  V      E+ R   N L   D T     
Subjt:  MLRTRGGLEATQYVDVEEMVAILLHIVA-HDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVN

Query:  VSMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKV-PKGYYYLCDAGYLNAEGFFAP
              P      G  + NVL +C  +  + +   G  GS  D+RVL   +S      V P   YYL D+GY N  G+ AP
Subjt:  VSMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKV-PKGYYYLCDAGYLNAEGFFAP

AT5G28950.1 unknown protein3.6e-1746.84Show/hide
Query:  WFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTG-LKVPK
        +F++C+GA+D THI   VS    P +R+RKGDI+ N+L  C+ + E+++V+ GWEGSA DS+VL D ++R +  L VP+
Subjt:  WFQNCLGALDGTHIKVNVSMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTG-LKVPK

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.9e-0543.14Show/hide
Query:  YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
        +I+V+ GWEGSA DSRVL D + +          +YL D G+ N   F AP
Subjt:  YIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.2e-3137.43Show/hide
Query:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV
        +L+TRG L  T  + +E  +AI L I+ H+++ +  +  F  S ET+SRH N VLNAV+ + +    QP+  + +  ++   +F++C+G +D  HI V V
Subjt:  MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNV

Query:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP
         + +   +R+  G +T NVL   S +  + +V+ GWEGSASD +VL   ++R   L+VP+G YY+ D  Y N  GF AP
Subjt:  SMSDHPRYRSRKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAAGAACAAGAGGGGGATTGGAAGCCACTCAATATGTGGATGTTGAAGAGATGGTTGCGATTCTTTTGCATATTGTAGCACACGATGTTAAGAATAAGGTAGCTCG
ACGATATTTTGCAAGGTCTGATGAAACAGTGTCAAGACACCTCAATGTTGTTCTTAACGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTGACCC
ATTCATGTTCACACGAGAAGTGGCGATGGTTTCAGAATTGTCTAGGTGCATTAGATGGTACACACATCAAAGTGAATGTAAGTATGAGTGATCACCCAAGGTATAGGTCT
AGAAAGGGTGACATTACCACAAATGTACTTGGTGTGTGTTCGCAAAATGGTGAGTACATATTTGTCATGCCTGGATGGGAAGGGTCTGCATCAGATTCGAGAGTACTTAG
AGATGTAGTGTCACGACCTACTGGTCTAAAAGTCCCAAAGGGTTACTACTACTTGTGTGATGCTGGTTATCTAAATGCTGAAGGATTCTTCGCTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAAGAACAAGAGGGGGATTGGAAGCCACTCAATATGTGGATGTTGAAGAGATGGTTGCGATTCTTTTGCATATTGTAGCACACGATGTTAAGAATAAGGTAGCTCG
ACGATATTTTGCAAGGTCTGATGAAACAGTGTCAAGACACCTCAATGTTGTTCTTAACGCAGTTCTTAGACTCCATGAAATCCTTCTTAAGCAACCTGATCCAGTGACCC
ATTCATGTTCACACGAGAAGTGGCGATGGTTTCAGAATTGTCTAGGTGCATTAGATGGTACACACATCAAAGTGAATGTAAGTATGAGTGATCACCCAAGGTATAGGTCT
AGAAAGGGTGACATTACCACAAATGTACTTGGTGTGTGTTCGCAAAATGGTGAGTACATATTTGTCATGCCTGGATGGGAAGGGTCTGCATCAGATTCGAGAGTACTTAG
AGATGTAGTGTCACGACCTACTGGTCTAAAAGTCCCAAAGGGTTACTACTACTTGTGTGATGCTGGTTATCTAAATGCTGAAGGATTCTTCGCTCCATAA
Protein sequenceShow/hide protein sequence
MLRTRGGLEATQYVDVEEMVAILLHIVAHDVKNKVARRYFARSDETVSRHLNVVLNAVLRLHEILLKQPDPVTHSCSHEKWRWFQNCLGALDGTHIKVNVSMSDHPRYRS
RKGDITTNVLGVCSQNGEYIFVMPGWEGSASDSRVLRDVVSRPTGLKVPKGYYYLCDAGYLNAEGFFAP