; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0014501 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0014501
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr01:11493567..11494469
RNA-Seq ExpressionCmc01g0014501
SyntenyCmc01g0014501
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039128.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-16494.67Show/hide
Query:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV
        MEVETEDTYKTD+KEKGDEADIPMIRFLLQQYTDIFTTPK LPPKRDIDHRILTLPNQ  INVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYS+PV
Subjt:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV

Query:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVK KDGGWRFCVDY KLNQATVSDKFPIPVIEELLDELYGAA+FSKLDLKSGYHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY
        FKPFLRRCVLVFFDDIL YSSDI+EH+KHLGMVFAVLRDN LYANHKKCVFAHSRIQYLGHQISKAGVEADE KIRSMV+WPRPSDVTELRGFLGLT YY
Subjt:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY

KAA0055376.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.5e-16292.67Show/hide
Query:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV
        M+VET+DTYKTD+KE+GDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLP+Q  INVRPYKYGHIQKGEIEKLVAEMLQDG+IRPSRSPYS+PV
Subjt:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV

Query:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVK K+GGWRFCVDYRKLNQAT+SDKFPIPVIEELLDELYGAA+FSKLDLKSGYHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY
        FKPFLRRCVLVFF DILVYS DI+EHEKHLGMVFAVLRDNQLYANHKKCVFAHS+IQYLGHQISKAGVEADE KIRSMVNWPRP DVTELRGFL LT YY
Subjt:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY

KAA0061073.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-16393.33Show/hide
Query:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV
        MEVET+DTYKTD+KE+GDEADIPMIRFLLQQY DIFTTPKGLPPKRDIDHRILTLP+Q  INVRPYKYGHIQKGEIEKLVAEMLQDG+IRPSRSPYS+PV
Subjt:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV

Query:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVK KDGGWRFCVDYRKLNQAT+SDKFPIPVIEELLDELYGAA+FSKLDLKSGYHQIRMKEED+EKT FRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY
        FKPFLRRCVLVFFDDILVYS DI E EKHLGMVFAVLRDNQLYANHKKCVFAHS+IQYLGHQISKAGVEADE KIRSMVNWPRPSDVTELRGFLGLT YY
Subjt:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY

TYK14624.1 uncharacterized protein E5676_scaffold1275G00160 [Cucumis melo var. makuwa]2.4e-16494Show/hide
Query:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV
        MEVE E+ YKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQ  INVRPYKYGH+QKGEIE LVAEMLQDGIIRPSRSPYS+ V
Subjt:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV

Query:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVK KDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAA+FSKLDLKSGYHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY
        FKPFLRRCVLVFFDDILVYSSD++EHEKHLGM+FAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEAD+ KIRSMVNWPRPSDVTELRGFLGLT YY
Subjt:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY

TYK29308.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.4e-16494Show/hide
Query:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV
        MEVE E+ YKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQ  INVRPYKYGH+QKGEIE LVAEMLQDGIIRPSRSPYS+ V
Subjt:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV

Query:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVK KDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAA+FSKLDLKSGYHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY
        FKPFLRRCVLVFFDDILVYSSD++EHEKHLGM+FAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEAD+ KIRSMVNWPRPSDVTELRGFLGLT YY
Subjt:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY

TrEMBL top hitse value%identityAlignment
A0A5A7T8C0 Ty3/gypsy retrotransposon protein1.1e-16494.67Show/hide
Query:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV
        MEVETEDTYKTD+KEKGDEADIPMIRFLLQQYTDIFTTPK LPPKRDIDHRILTLPNQ  INVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYS+PV
Subjt:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV

Query:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVK KDGGWRFCVDY KLNQATVSDKFPIPVIEELLDELYGAA+FSKLDLKSGYHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY
        FKPFLRRCVLVFFDDIL YSSDI+EH+KHLGMVFAVLRDN LYANHKKCVFAHSRIQYLGHQISKAGVEADE KIRSMV+WPRPSDVTELRGFLGLT YY
Subjt:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY

A0A5A7UM77 Ty3/gypsy retrotransposon protein3.1e-16292.67Show/hide
Query:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV
        M+VET+DTYKTD+KE+GDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLP+Q  INVRPYKYGHIQKGEIEKLVAEMLQDG+IRPSRSPYS+PV
Subjt:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV

Query:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVK K+GGWRFCVDYRKLNQAT+SDKFPIPVIEELLDELYGAA+FSKLDLKSGYHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY
        FKPFLRRCVLVFF DILVYS DI+EHEKHLGMVFAVLRDNQLYANHKKCVFAHS+IQYLGHQISKAGVEADE KIRSMVNWPRP DVTELRGFL LT YY
Subjt:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY

A0A5A7UYM1 Ty3/gypsy retrotransposon protein7.4e-16493.33Show/hide
Query:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV
        MEVET+DTYKTD+KE+GDEADIPMIRFLLQQY DIFTTPKGLPPKRDIDHRILTLP+Q  INVRPYKYGHIQKGEIEKLVAEMLQDG+IRPSRSPYS+PV
Subjt:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV

Query:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVK KDGGWRFCVDYRKLNQAT+SDKFPIPVIEELLDELYGAA+FSKLDLKSGYHQIRMKEED+EKT FRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY
        FKPFLRRCVLVFFDDILVYS DI E EKHLGMVFAVLRDNQLYANHKKCVFAHS+IQYLGHQISKAGVEADE KIRSMVNWPRPSDVTELRGFLGLT YY
Subjt:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY

A0A5D3CUL0 Reverse transcriptase domain-containing protein1.1e-16494Show/hide
Query:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV
        MEVE E+ YKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQ  INVRPYKYGH+QKGEIE LVAEMLQDGIIRPSRSPYS+ V
Subjt:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV

Query:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVK KDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAA+FSKLDLKSGYHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY
        FKPFLRRCVLVFFDDILVYSSD++EHEKHLGM+FAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEAD+ KIRSMVNWPRPSDVTELRGFLGLT YY
Subjt:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY

A0A5D3E0Q7 Transposon Ty3-G Gag-Pol polyprotein1.1e-16494Show/hide
Query:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV
        MEVE E+ YKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQ  INVRPYKYGH+QKGEIE LVAEMLQDGIIRPSRSPYS+ V
Subjt:  MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPV

Query:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVK KDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAA+FSKLDLKSGYHQIRMKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY
        FKPFLRRCVLVFFDDILVYSSD++EHEKHLGM+FAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEAD+ KIRSMVNWPRPSDVTELRGFLGLT YY
Subjt:  FKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.4e-5540.5Show/hide
Query:  LLQQYTDI-FTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG-----WRFCVDYRKLNQ
        LLQ+Y DI +     L       H I T    NL     Y Y    + E+E  + +ML  GIIR S SPY++P+ +V  K        +R  +DYRKLN+
Subjt:  LLQQYTDI-FTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG-----WRFCVDYRKLNQ

Query:  ATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSS
         TV D+ PIP ++E+L +L     F+ +DL  G+HQI M  E + KT F T  GHYE+L MPFGL NAPATFQ  MN + +P L +  LV+ DDI+V+S+
Subjt:  ATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSS

Query:  DISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY
         + EH + LG+VF  L    L     KC F      +LGH ++  G++ +  KI ++  +P P+   E++ FLGLT YY
Subjt:  DISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY

P20825 Retrovirus-related Pol polyprotein from transposon 2976.5e-5640.55Show/hide
Query:  ILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG-----WRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIF
        +L   + + I  + Y      + E+E  V EML  G+IR S SPY++P  +V  K        +R  +DYRKLN+ T+ D++PIP ++E+L +L     F
Subjt:  ILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG-----WRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIF

Query:  SKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANH
        + +DL  G+HQI M EE I KT F T  GHYE+L MPFGL NAPATFQ  MN + +P L +  LV+ DDI+++S+ ++EH   + +VF  L D  L    
Subjt:  SKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANH

Query:  KKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY
         KC F      +LGH ++  G++ +  K++++V++P P+   E+R FLGLT YY
Subjt:  KKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein5.0e-5639.47Show/hide
Query:  VETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKR------DIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPY
        +++ +   TD   K     +P+  +L Q+Y +I      LPP+        + H I   P   L  ++PY      + EI K+V ++L +  I PS+SP 
Subjt:  VETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKR------DIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPY

Query:  SNPVLLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSL
        S+PV+LV  KDG +R CVDYR LN+AT+SD FP+P I+ LL  +  A IF+ LDL SGYHQI M+ +D  KT F T  G YE+ VMPFGL NAP+TF   
Subjt:  SNPVLLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSL

Query:  MNQVFKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGL
        M   F+    R V V+ DDIL++S    EH KHL  V   L++  L    KKC FA    ++LG+ I    +   ++K  ++ ++P P  V + + FLG+
Subjt:  MNQVFKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGL

Query:  TSYY
         +YY
Subjt:  TSYY

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus5.9e-5740.28Show/hide
Query:  MIRFLLQQYTDIFTTP-KGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPVLLVKNK-----DGGWRFCVDYR
        ++  LL ++  IF  P  G+  +  +   I T   Q+ I  + Y Y    +GE+E+ + E+LQDGIIRPS SPY++P+ +V  K     +  +R  VD++
Subjt:  MIRFLLQQYTDIFTTP-KGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPVLLVKNK-----DGGWRFCVDYR

Query:  KLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDIL
        +LN  T+ D +PIP I   L  L  A  F+ LDL SG+HQI MKE DI KT F T  G YEFL +PFGL NAPA FQ +++ + +  + +   V+ DDI+
Subjt:  KLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDIL

Query:  VYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY
        V+S D   H K+L +V A L    L  N +K  F  +++++LG+ ++  G++AD  K+R++   P P+ V EL+ FLG+TSYY
Subjt:  VYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY

Q99315 Transposon Ty3-G Gag-Pol polyprotein5.0e-5639.47Show/hide
Query:  VETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKR------DIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPY
        +++ +   TD   K     +P+  +L Q+Y +I      LPP+        + H I   P   L  ++PY      + EI K+V ++L +  I PS+SP 
Subjt:  VETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKR------DIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPY

Query:  SNPVLLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSL
        S+PV+LV  KDG +R CVDYR LN+AT+SD FP+P I+ LL  +  A IF+ LDL SGYHQI M+ +D  KT F T  G YE+ VMPFGL NAP+TF   
Subjt:  SNPVLLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSL

Query:  MNQVFKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGL
        M   F+    R V V+ DDIL++S    EH KHL  V   L++  L    KKC FA    ++LG+ I    +   ++K  ++ ++P P  V + + FLG+
Subjt:  MNQVFKPFLRRCVLVFFDDILVYSSDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGL

Query:  TSYY
         +YY
Subjt:  TSYY

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein1.7e-0652.5Show/hide
Query:  IQKGEIEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGGW
        +++  ++  + EML+  II+PS SPYS+PVLLV+ KDGGW
Subjt:  IQKGEIEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGGW

ATMG00860.1 DNA/RNA polymerases superfamily protein1.9e-1856.76Show/hide
Query:  HLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQ--ISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY
        HLGMV  +   +Q YAN KKC F   +I YLGH+  IS  GV AD  K+ +MV WP P + TELRGFLGLT YY
Subjt:  HLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQ--ISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTAGAAACTGAGGATACCTACAAGACTGATAAGAAAGAGAAAGGAGATGAAGCTGATATCCCTATGATTCGGTTCTTACTACAACAGTACACCGATATCTTTAC
CACACCAAAGGGTCTCCCTCCAAAGAGAGATATCGACCACAGGATCTTGACACTGCCCAACCAAAATCTGATCAATGTAAGACCGTATAAATATGGACATATCCAAAAAG
GGGAGATAGAGAAGTTAGTGGCTGAAATGCTGCAAGATGGTATCATCCGCCCAAGCCGAAGCCCATATTCCAACCCTGTTCTCCTGGTTAAAAATAAAGATGGGGGGTGG
CGGTTTTGTGTTGATTACCGGAAGTTGAATCAAGCTACAGTCTCAGATAAGTTTCCTATCCCGGTGATTGAAGAACTATTGGATGAGCTATATGGAGCTGCGATTTTCTC
TAAACTGGACCTCAAATCGGGTTACCACCAAATTAGAATGAAGGAAGAAGATATAGAGAAGACAACGTTTCGCACCCATGAAGGCCATTATGAATTCCTAGTGATGCCTT
TCGGTCTCACAAATGCACCAGCAACGTTTCAATCACTGATGAATCAGGTTTTCAAGCCCTTCCTTAGACGTTGTGTTTTGGTATTTTTTGACGATATCTTAGTATATAGC
AGTGACATATCTGAACATGAGAAACACCTAGGAATGGTTTTTGCTGTGTTAAGGGATAATCAACTTTATGCCAATCACAAGAAATGTGTATTTGCTCATTCTAGAATCCA
ATATTTGGGACACCAAATATCCAAGGCAGGGGTAGAGGCAGATGAATATAAAATTAGAAGTATGGTAAATTGGCCAAGACCTTCAGATGTGACTGAACTAAGAGGATTTC
TGGGGCTGACTAGTTATTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTAGAAACTGAGGATACCTACAAGACTGATAAGAAAGAGAAAGGAGATGAAGCTGATATCCCTATGATTCGGTTCTTACTACAACAGTACACCGATATCTTTAC
CACACCAAAGGGTCTCCCTCCAAAGAGAGATATCGACCACAGGATCTTGACACTGCCCAACCAAAATCTGATCAATGTAAGACCGTATAAATATGGACATATCCAAAAAG
GGGAGATAGAGAAGTTAGTGGCTGAAATGCTGCAAGATGGTATCATCCGCCCAAGCCGAAGCCCATATTCCAACCCTGTTCTCCTGGTTAAAAATAAAGATGGGGGGTGG
CGGTTTTGTGTTGATTACCGGAAGTTGAATCAAGCTACAGTCTCAGATAAGTTTCCTATCCCGGTGATTGAAGAACTATTGGATGAGCTATATGGAGCTGCGATTTTCTC
TAAACTGGACCTCAAATCGGGTTACCACCAAATTAGAATGAAGGAAGAAGATATAGAGAAGACAACGTTTCGCACCCATGAAGGCCATTATGAATTCCTAGTGATGCCTT
TCGGTCTCACAAATGCACCAGCAACGTTTCAATCACTGATGAATCAGGTTTTCAAGCCCTTCCTTAGACGTTGTGTTTTGGTATTTTTTGACGATATCTTAGTATATAGC
AGTGACATATCTGAACATGAGAAACACCTAGGAATGGTTTTTGCTGTGTTAAGGGATAATCAACTTTATGCCAATCACAAGAAATGTGTATTTGCTCATTCTAGAATCCA
ATATTTGGGACACCAAATATCCAAGGCAGGGGTAGAGGCAGATGAATATAAAATTAGAAGTATGGTAAATTGGCCAAGACCTTCAGATGTGACTGAACTAAGAGGATTTC
TGGGGCTGACTAGTTATTACTGA
Protein sequenceShow/hide protein sequence
MEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGGW
RFCVDYRKLNQATVSDKFPIPVIEELLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYS
SDISEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEYKIRSMVNWPRPSDVTELRGFLGLTSYY