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Cmc01g0014521 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0014521
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr01:11522362..11522844
RNA-Seq ExpressionCmc01g0014521
SyntenyCmc01g0014521
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037745.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.2e-5580Show/hide
Query:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS
        F KH SELSRTYI F NMI TQFSCPIK L  DNALEY DSTL SFLSQQGTLVQRSC HTSQQN  AERKH HIL+SVRAL L ASC EKF GEAALTS
Subjt:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS

Query:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
        VYTIN LPSSVLQNI  ++RL+GTPPNY NLKV GC CFVLL PH
Subjt:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
TYK03707.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.4e-5680Show/hide
Query:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS
        F KH SELSRTYI F NMI TQFSCPIK L  DNALEY DSTL SFLSQQGTLVQRSC HTSQQN  AERKH HIL+SVRA  L ASC EKF GEAALTS
Subjt:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS

Query:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
        VYTIN LPSSVLQNI  ++RL+GTPPNY NLKV GC CFVLLHPH
Subjt:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
TYK15021.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.7e-5680Show/hide
Query:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS
        F KH SELSRTYI F NMI TQFSCPIK L  DNALEY DSTL SFLSQQGTLVQRSC HTSQQN  AERKH HIL+SVRAL L ASC EKF GEAALTS
Subjt:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS

Query:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
        VYTIN LPSSVLQNI  +++L+GTPPNY NLKV GC CFVLLHPH
Subjt:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
TYK19656.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.2e-5580Show/hide
Query:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS
        F KH SELSRTYI F NMI TQFSCPIK L  DNALEY DSTL SFLSQQGTLVQRSC HTSQQN  AERKH HIL+SVRAL L ASC EKF GEAALTS
Subjt:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS

Query:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
        VYTIN LPSSVLQNI  ++RL+GTPPNY NLKV GC CFVLL PH
Subjt:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
TYK26360.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.2e-5580Show/hide
Query:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS
        F KH SELSRTYI F NMI TQFSCPIK L  DNALEY DSTL SFLSQQGTLVQRSC HTSQQN  AERKH HIL+SVRAL L ASC EKF GEAALTS
Subjt:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS

Query:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
        VYTIN LPSSVLQNI  ++RL+GTPPNY NLKV GC CFVLL PH
Subjt:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
TrEMBL top hitse value%identityAlignment
A0A5A7T8F2 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-5580Show/hide
Query:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS
        F KH SELSRTYI F NMI TQFSCPIK L  DNALEY DSTL SFLSQQGTLVQRSC HTSQQN  AERKH HIL+SVRAL L ASC EKF GEAALTS
Subjt:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS

Query:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
        VYTIN LPSSVLQNI  ++RL+GTPPNY NLKV GC CFVLL PH
Subjt:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
A0A5A7VIT8 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-5580Show/hide
Query:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS
        F KH SELSRTYI F NMI TQFSCPIK L  DNALEY DSTL SFLSQQGTLVQRSC HTSQQN  AERKH HIL+SVRAL L ASC EKF GEAALTS
Subjt:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS

Query:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
        VYTIN LPSSVLQNI  ++RL+GTPPNY NLKV GC CFVLL PH
Subjt:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
A0A5D3BW28 Retrovirus-related Pol polyprotein from transposon TNT 1-943.6e-5680Show/hide
Query:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS
        F KH SELSRTYI F NMI TQFSCPIK L  DNALEY DSTL SFLSQQGTLVQRSC HTSQQN  AERKH HIL+SVRA  L ASC EKF GEAALTS
Subjt:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS

Query:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
        VYTIN LPSSVLQNI  ++RL+GTPPNY NLKV GC CFVLLHPH
Subjt:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
A0A5D3CT53 Retrovirus-related Pol polyprotein from transposon TNT 1-942.7e-5680Show/hide
Query:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS
        F KH SELSRTYI F NMI TQFSCPIK L  DNALEY DSTL SFLSQQGTLVQRSC HTSQQN  AERKH HIL+SVRAL L ASC EKF GEAALTS
Subjt:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS

Query:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
        VYTIN LPSSVLQNI  +++L+GTPPNY NLKV GC CFVLLHPH
Subjt:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
A0A5D3D7V8 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-5580Show/hide
Query:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS
        F KH SELSRTYI F NMI TQFSCPIK L  DNALEY DSTL SFLSQQGTLVQRSC HTSQQN  AERKH HIL+SVRAL L ASC EKF GEAALTS
Subjt:  FFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTS

Query:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
        VYTIN LPSSVLQNI  ++RL+GTPPNY NLKV GC CFVLL PH
Subjt:  VYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
SwissProt top hitse value%identityAlignment
P04146 Copia protein1.0e-0727.86Show/hide
Query:  KHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTSVY
        K+ S++   +  FV      F+  +  L +DN  EY+ + +  F  ++G     +  HT Q N  +ER    I    R +   A   + F GEA LT+ Y
Subjt:  KHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTSVY

Query:  TINSLPSSVLQNIYR--YKRLFGTPPNYFNLKVLGCVCFV
         IN +PS  L +  +  Y+      P   +L+V G   +V
Subjt:  TINSLPSSVLQNIYR--YKRLFGTPPNYFNLKVLGCVCFV
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE18.3e-1835.66Show/hide
Query:  KHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTSVY
        K  S++  T+I F N++  +F   I     DN  E++   L+ + SQ G     S  HT + N  +ERKH HI+ +   L   AS  + +   A   +VY
Subjt:  KHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTSVY

Query:  TINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
         IN LP+ +LQ    +++LFGT PNY  L+V GC C+  L P+
Subjt:  TINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.9e-1837.06Show/hide
Query:  KHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTSVY
        K  S++  T+I+F +++  +F   I  L  DN  E++   L  +LSQ G     S  HT + N  +ERKH HI+     L   AS  + +   A   +VY
Subjt:  KHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGEAALTSVY

Query:  TINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
         IN LP+ +LQ    +++LFG PPNY  LKV GC C+  L P+
Subjt:  TINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTGTTCATTGATGATTTCTCTCGATTTACATGGATTTATTTTTTTTAAACATCTTTCTGAATTATCTCGCACTTATATTGTGTTTGTTAACATGATTCACACTCA
ATTCTCTTGTCCTATCAAAATCCTCTGCCTTGATAATGCCTTGGAGTATATAGACTCTACTCTTTTTTCTTTTTTGTCCCAACAAGGTACTCTTGTTCAACGCTCTTGCA
CCCACACCTCTCAACAAAATGAGTGTGCTGAGCGCAAGCATCACCACATTCTTAACTCAGTACGTGCCCTCTTTCTTTTCGCCTCATGTCTTGAGAAATTTAAGGGTGAA
GCAGCTCTTACATCCGTCTACACCATCAATAGTCTTCCTTCTTCTGTTCTTCAGAACATCTATCGATACAAAAGACTATTTGGTACTCCTCCTAACTACTTTAACCTTAA
AGTTCTTGGTTGTGTCTGCTTTGTTCTTTTGCATCCTCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTGTTCATTGATGATTTCTCTCGATTTACATGGATTTATTTTTTTTAAACATCTTTCTGAATTATCTCGCACTTATATTGTGTTTGTTAACATGATTCACACTCA
ATTCTCTTGTCCTATCAAAATCCTCTGCCTTGATAATGCCTTGGAGTATATAGACTCTACTCTTTTTTCTTTTTTGTCCCAACAAGGTACTCTTGTTCAACGCTCTTGCA
CCCACACCTCTCAACAAAATGAGTGTGCTGAGCGCAAGCATCACCACATTCTTAACTCAGTACGTGCCCTCTTTCTTTTCGCCTCATGTCTTGAGAAATTTAAGGGTGAA
GCAGCTCTTACATCCGTCTACACCATCAATAGTCTTCCTTCTTCTGTTCTTCAGAACATCTATCGATACAAAAGACTATTTGGTACTCCTCCTAACTACTTTAACCTTAA
AGTTCTTGGTTGTGTCTGCTTTGTTCTTTTGCATCCTCATTAA
Protein sequenceShow/hide protein sequence
MFCSLMISLDLHGFIFFKHLSELSRTYIVFVNMIHTQFSCPIKILCLDNALEYIDSTLFSFLSQQGTLVQRSCTHTSQQNECAERKHHHILNSVRALFLFASCLEKFKGE
AALTSVYTINSLPSSVLQNIYRYKRLFGTPPNYFNLKVLGCVCFVLLHPH