CuGenDBv2

Gene ID	Cmc01g0014971
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Integrase catalytic domain-containing protein
Genome location	CMiso1.1chr01:12204490..12205065
RNA-Seq Expression	Cmc01g0014971
Synteny	Cmc01g0014971
Gene Ontology terms	GO:0000105 - histidine biosynthetic process (biological process) GO:0098542 - defense response to other organism (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0060320 - rejection of self pollen (biological process) GO:0042221 - response to chemical (biological process) GO:0015074 - DNA integration (biological process) GO:0007165 - signal transduction (biological process) GO:0006511 - ubiquitin-dependent protein catabolic process (biological process) GO:0006351 - transcription, DNA-templated (biological process) GO:0000428 - DNA-directed RNA polymerase complex (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0005576 - extracellular region (cellular component) GO:0000786 - nucleosome (cellular component) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0008909 - isochorismate synthase activity (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0030527 - structural constituent of chromatin (molecular function) GO:0003879 - ATP phosphoribosyltransferase activity (molecular function) GO:0043531 - ADP binding (molecular function) GO:0046982 - protein heterodimerization activity (molecular function) GO:0003682 - chromatin binding (molecular function) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAD6453934.1 hypothetical protein E3N88_08640 [Mikania micrantha]

4.8e-62

73.08

Show/hide

Query:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT
        NHTWEL DLP GNKPI  KWIFK+K + +G +++YKARLV+  +TQK G+DYFDTYSPVTKITTIR+LI++AAI+ LLIHQMDVKTAFLNGDL++EIYM 
Subjt:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT

Query:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSK
        QPEGF +SG E+KVCKLRKSLYGLKQAPK+WYEKF+ TL  +G+ +N+SD+CVYSK
Subjt:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSK

PHT30970.1 hypothetical protein CQW23_27307 [Capsicum baccatum]

2.4e-61

73.08

Show/hide

Query:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT
        NHTWELVDLP GNKP+  KWIFKRK K++G I++YKARLVV  + QK+G+DYFDTYSPVT+IT+IR LIALAA+++L IHQMDVKTAFLNG+LE+EIYM 
Subjt:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT

Query:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSK
        QPEGF + G+ENKVCKL KSLYGLKQAPKQW+ KF+ T++ NGFKIN  D CVY K
Subjt:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSK

PHT42147.1 hypothetical protein CQW23_16172 [Capsicum baccatum]

2.4e-61

73.08

Show/hide

Query:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT
        NHTWELVDLP GNKP+  KWIFKRK K++G I++YKARLVV  + QK+G+DYFDTYSPVT+IT+IR LIALAA+++L IHQMDVKTAFLNG+LE+EIYM 
Subjt:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT

Query:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSK
        QPEGF + G+ENKVCKL KSLYGLKQAPKQW+ KF+ T++ NGFKIN  D CVY K
Subjt:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSK

PHT43509.1 ATP phosphoribosyltransferase 1, chloroplastic [Capsicum baccatum]

1.4e-61

73.72

Show/hide

Query:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT
        NHTWELVDLP GNKP+  KWIFKRK K++G IE+YKARLVV  + QK+G+DYFDTYSPVT+IT+IR LIALAA+++L IHQMDVKTAFLNG+LE+EIYM 
Subjt:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT

Query:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSK
        QPEGF + G+ENKVCKL KSLYGLKQAPKQW+ KF+ T++ NGFKIN  D CVY K
Subjt:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSK

TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

2.0e-84

97.5

Show/hide

Query:  MNHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYM
        MNHTWELVDLPMGNKPIRCKWIFKRKTK NGLIERYKARLVVV YTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNG+LE+EIYM
Subjt:  MNHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYM

Query:  TQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVG
        TQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVG
Subjt:  TQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVG

TrEMBL top hits

e value

%identity

Alignment

A0A2G2WEA7 ATP phosphoribosyltransferase 1, chloroplastic

6.8e-62

73.72

Show/hide

Query:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT
        NHTWELVDLP GNKP+  KWIFKRK K++G IE+YKARLVV  + QK+G+DYFDTYSPVT+IT+IR LIALAA+++L IHQMDVKTAFLNG+LE+EIYM 
Subjt:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT

Query:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSK
        QPEGF + G+ENKVCKL KSLYGLKQAPKQW+ KF+ T++ NGFKIN  D CVY K
Subjt:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSK

A0A2N9EQT1 Integrase catalytic domain-containing protein

1.6e-63

70.81

Show/hide

Query:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT
        NHTWELV+LP G K I  KW+FK+K K++G IE++KARLV   YTQK+G+DYFDTYSPVT++TTIR L+A+A+I+ L+IHQMDVKTAFLNGDL++EIYM 
Subjt:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT

Query:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVGVT
        QPEGF + GQENKVCKLRKSLYGLKQAPKQW+EKF+ TL++NGF +N SD CVYSK  G +
Subjt:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVGVT

A0A2N9H4B0 Uncharacterized protein

1.6e-63

70.81

Show/hide

Query:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT
        NHTWELV+LP G K I  KW+FK+K K++G IE++KARLV   YTQK+G+DYFDTYSPVT++TTIR L+A+A+I+ L+IHQMDVKTAFLNGDL++EIYM 
Subjt:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT

Query:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVGVT
        QPEGF + GQENKVCKLRKSLYGLKQAPKQW+EKF+ TL++NGF +N SD CVYSK  G +
Subjt:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVGVT

A0A5D3C5T2 Ty1-copia retrotransposon protein

9.8e-85

97.5

Show/hide

Query:  MNHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYM
        MNHTWELVDLPMGNKPIRCKWIFKRKTK NGLIERYKARLVVV YTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNG+LE+EIYM
Subjt:  MNHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYM

Query:  TQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVG
        TQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVG
Subjt:  TQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVG

A0A5N6PGV2 Reverse transcriptase Ty1/copia-type domain-containing protein

2.3e-62

73.08

Show/hide

Query:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT
        NHTWEL DLP GNKPI  KWIFK+K + +G +++YKARLV+  +TQK G+DYFDTYSPVTKITTIR+LI++AAI+ LLIHQMDVKTAFLNGDL++EIYM 
Subjt:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT

Query:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSK
        QPEGF +SG E+KVCKLRKSLYGLKQAPK+WYEKF+ TL  +G+ +N+SD+CVYSK
Subjt:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

5.4e-32

44.52

Show/hide

Query:  MNHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYM
        +N+TW +   P     +  +W+F  K    G   RYKARLV   +TQK  +DY +T++PV +I++ R +++L   +NL +HQMDVKTAFLNG L++EIYM
Subjt:  MNHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYM

Query:  TQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVY
          P+G  IS   + VCKL K++YGLKQA + W+E F   L    F  +S D C+Y
Subjt:  TQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVY

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.0e-46

50.27

Show/hide

Query:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT
        N T++LV+LP G +P++CKW+FK K   +  + RYKARLVV  + QK+G+D+ + +SPV K+T+IR +++LAA  +L + Q+DVKTAFL+GDLE+EIYM 
Subjt:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMT

Query:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVGVTPRIFEVNFSYVLYNFSGMLNFG
        QPEGF+++G+++ VCKL KSLYGLKQAP+QWY KF++ + +  +    SD CVY K      R  E NF  +L     ML  G
Subjt:  QPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVGVTPRIFEVNFSYVLYNFSGMLNFG

P92520 Uncharacterized mitochondrial protein AtMg00820

1.4e-11

43.06

Show/hide

Query:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALA
        N TW LV  P+    + CKW+FK K  S+G ++R KARLV   + Q++G+ + +TYSPV +  TIR ++ +A
Subjt:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.6e-36

49.03

Show/hide

Query:  NHTWELVDLPMGNKPI-RCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYM
        NHTW+LV  P  +  I  C+WIF +K  S+G + RYKARLV   Y Q+ G+DY +T+SPV K T+IR ++ +A   +  I Q+DV  AFL G L  ++YM
Subjt:  NHTWELVDLPMGNKPI-RCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYM

Query:  TQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVY
        +QP GF    + N VCKLRK+LYGLKQAP+ WY +  N L+T GF  + SDT ++
Subjt:  TQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVY

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

6.8e-35

47.1

Show/hide

Query:  NHTWELVDLPMGNKPI-RCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYM
        NHTW+LV  P  +  I  C+WIF +K  S+G + RYKARLV   Y Q+ G+DY +T+SPV K T+IR ++ +A   +  I Q+DV  AFL G L  E+YM
Subjt:  NHTWELVDLPMGNKPI-RCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYM

Query:  TQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVY
        +QP GF    + + VC+LRK++YGLKQAP+ WY +    L+T GF  + SDT ++
Subjt:  TQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVY

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

1.1e-43

48.57

Show/hide

Query:  HTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMTQ
        HTWE+  LP   KPI CKW++K K  S+G IERYKARLV   YTQ++G+D+ +T+SPV K+T+++ ++A++AI+N  +HQ+D+  AFLNGDL++EIYM  
Subjt:  HTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMTQ

Query:  PEGFKI----SGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVGVTPRIFEVNFSYV
        P G+      S   N VC L+KS+YGLKQA +QW+ KF+ TLI  GF  + SD   + K   +T  +F     YV
Subjt:  PEGFKI----SGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVGVTPRIFEVNFSYV

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)

9.9e-13

43.06

Show/hide

Query:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALA
        N TW LV  P+    + CKW+FK K  S+G ++R KARLV   + Q++G+ + +TYSPV +  TIR ++ +A
Subjt:  NHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATCATACATGGGAACTGGTGGATCTTCCTATGGGAAACAAGCCAATTAGATGTAAGTGGATCTTTAAAAGGAAAACAAAATCAAATGGATTAATAGAAAGATACAA
GGCTAGATTAGTGGTAGTACGATATACCCAAAAACAAGGTGTTGACTATTTTGACACCTATTCCCCTGTAACTAAGATAACTACAATTAGGGCCTTGATTGCTTTGGCCG
CAATACATAATCTTCTTATTCATCAAATGGACGTAAAAACAGCCTTTTTAAATGGTGACTTAGAAAAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATCTCTGGG
CAAGAAAACAAAGTGTGTAAACTGAGAAAGTCTCTATACGGTCTCAAGCAAGCTCCCAAACAGTGGTACGAAAAATTTAACAATACGTTGATAACCAATGGATTTAAAAT
AAATTCCTCTGACACGTGTGTTTATTCAAAGATGGTTGGTGTAACGCCCCGAATTTTCGAGGTAAACTTTTCTTACGTTTTATATAATTTTTCGGGAATGTTAAATTTTG
GAGTAATTTCTGAAATTCTGAATTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNHTWELVDLPMGNKPIRCKWIFKRKTKSNGLIERYKARLVVVRYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGDLEKEIYMTQPEGFKISG
QENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVGVTPRIFEVNFSYVLYNFSGMLNFGVISEILN

Cmc01g0014971 (gene) of Melon (Charmono) v1.1 genome