CuGenDBv2

Gene ID	Cmc01g0015111
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Genome location	CMiso1.1chr01:12519539..12520912
RNA-Seq Expression	Cmc01g0015111
Synteny	Cmc01g0015111
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR000953 - Chromo/chromo shadow domain IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR016197 - Chromo-like domain superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0048037.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.1e-232

89.1

Show/hide

Query:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI
        KDIMRYCEECAICQRNKSSALSP GLLMPL+IPDAIWSDISMDFIEGLPKSKGWDVI VVVDRLSKYGHFLLLKHPF+AKMVAETFV+EV+RLHG PRSI
Subjt:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI

Query:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD
        VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKS+ETYLRCFC E+P+EWSQW+HWAEYWYNTTYHSSIGITPFQAVYGRLPPPL+YYGD
Subjt:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD

Query:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP
        METPNSTLDQ LKDRD+ LGALKEHLKLAQERMKK AD KRREVEFQEGD VFLKLRPYRQ SLRKKRNEKLSPKYF PYR+LERIG+VAY+LELPA A 
Subjt:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP

Query:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL
        IHPVFHVSQLKKAVGRGETVQPLNPYMN N+EWIT+PEEVYSYRKNPATKEWEALISWKGL PHEATWE+CTDMKYQFP+FHLEDKVDLEEESDARP IL
Subjt:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL

Query:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPR
        FTY ++NKKKHE  +  QVA ++MAM+P  R
Subjt:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPR

KAA0050511.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.3e-234

85.59

Show/hide

Query:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI
        +D+MRYCEECAICQRNKSSAL+P GLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKY HFLLLKHPFTAKMVAETF++EV+RLHG PRSI
Subjt:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI

Query:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD
        VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGE+P EWSQW+HWAEYWYNTTYHSSIGITPFQAVYGRLPPPL+YYGD
Subjt:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD

Query:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP
        METPNSTLDQ LKDRD+ LGALKEHLKLAQERMKKQAD+KRREVEFQEGD VFLKLRPYRQ S+RKKRNEKLSPKYF PYR+LERIG+VAYRLELPA+A 
Subjt:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP

Query:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL
        IHPVFHVSQLKKAVGRGETVQ L PY+NEN+EWITQPEEVY YRKNP+T+EWEALISWKGL PHEATWE+CTDMKYQFPEFHLEDKVDLEEESDARP IL
Subjt:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL

Query:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPRRHVVDGKKARRMGTRKGDPQ
        FTY+++NKKKHETNEG     +    +  P +  V+G++++  G ++GDPQ
Subjt:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPRRHVVDGKKARRMGTRKGDPQ

TYJ96499.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

9.0e-232

89.49

Show/hide

Query:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI
        KDIMRYCEECAICQRNKSSALSP GLLMPL+IPDAIWSDISMDFIEGLPKSKGWDVI VVVDRLSKYGHFLLLKHPF+AKMVAETFV+EV+RLHG PRSI
Subjt:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI

Query:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD
        VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKS+ETYLRCFC E+P+EWSQW+HWAEYWYNTTYHSSIGITPFQAVYGRLPPPL+YYGD
Subjt:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD

Query:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP
        METPNSTLDQ LKDRD+ LGALKEHLKLAQERMKK AD KRREVEFQEGD VFLKLRPYRQ SLRKKRNEKLSPKYF PYR+LERIG+VAY+LELPA A 
Subjt:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP

Query:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL
        IHPVFHVSQLKKAVGRGETVQPLNPYMN N+EWIT+PEEVYSYRKNPATKEWEALISWKGL PHEATWE+CTDMKYQFP+FHLEDKVDLEEESDARP IL
Subjt:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL

Query:  FTYNKRNKKKHETNEGGQVAGKVMAMKP
        FTY ++NKKKHE  +  QVA ++MAM+P
Subjt:  FTYNKRNKKKHETNEGGQVAGKVMAMKP

TYK06572.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

6.0e-236

85.53

Show/hide

Query:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI
        +D+MRYCEECAICQRNKSSAL+P GLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKY HFLLLKHPFTAKMVAETF++EV+RLHG PRSI
Subjt:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI

Query:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD
        VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGE+P EWSQW+HWAEYWYNTTYHSSIGITPFQAVYGRLPPPL+YYGD
Subjt:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD

Query:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP
        METPNSTLDQ LKDRD+ LGALKEHLKLAQERMKKQAD+KRREVEFQEGD VFLKLRPYRQ S+RKKRNEKLSPKYF PYR+LERIG+VAYRLELPA+A 
Subjt:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP

Query:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL
        IHPVFHVSQLKKAVGRGETVQ L PY+NEN+EWITQPEEVY YRKNP+T+EWEALISWKGL PHEATWE+CTDMKYQFPEFHLEDKVDLEEESDARP IL
Subjt:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL

Query:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPRRHVVDGKKARRMGTRKGDPQLVSSG
        FTY+++NKKKHETNEG     +    +  P +  V+G++++  G ++GDPQ VSSG
Subjt:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPRRHVVDGKKARRMGTRKGDPQLVSSG

TYK24654.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

6.0e-236

85.53

Show/hide

Query:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI
        +D+MRYCEECAICQRNKSSAL+P GLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKY HFLLLKHPFTAKMVAETF++EV+RLHG PRSI
Subjt:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI

Query:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD
        VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGE+P EWSQW+HWAEYWYNTTYHSSIGITPFQAVYGRLPPPL+YYGD
Subjt:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD

Query:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP
        METPNSTLDQ LKDRD+ LGALKEHLKLAQERMKKQAD+KRREVEFQEGD VFLKLRPYRQ S+RKKRNEKLSPKYF PYR+LERIG+VAYRLELPA+A 
Subjt:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP

Query:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL
        IHPVFHVSQLKKAVGRGETVQ L PY+NEN+EWITQPEEVY YRKNP+T+EWEALISWKGL PHEATWE+CTDMKYQFPEFHLEDKVDLEEESDARP IL
Subjt:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL

Query:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPRRHVVDGKKARRMGTRKGDPQLVSSG
        FTY+++NKKKHETNEG     +    +  P +  V+G++++  G ++GDPQ VSSG
Subjt:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPRRHVVDGKKARRMGTRKGDPQLVSSG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U1D6 Ty3/gypsy retrotransposon protein

2.0e-232

89.1

Show/hide

Query:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI
        KDIMRYCEECAICQRNKSSALSP GLLMPL+IPDAIWSDISMDFIEGLPKSKGWDVI VVVDRLSKYGHFLLLKHPF+AKMVAETFV+EV+RLHG PRSI
Subjt:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI

Query:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD
        VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKS+ETYLRCFC E+P+EWSQW+HWAEYWYNTTYHSSIGITPFQAVYGRLPPPL+YYGD
Subjt:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD

Query:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP
        METPNSTLDQ LKDRD+ LGALKEHLKLAQERMKK AD KRREVEFQEGD VFLKLRPYRQ SLRKKRNEKLSPKYF PYR+LERIG+VAY+LELPA A 
Subjt:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP

Query:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL
        IHPVFHVSQLKKAVGRGETVQPLNPYMN N+EWIT+PEEVYSYRKNPATKEWEALISWKGL PHEATWE+CTDMKYQFP+FHLEDKVDLEEESDARP IL
Subjt:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL

Query:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPR
        FTY ++NKKKHE  +  QVA ++MAM+P  R
Subjt:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPR

A0A5A7UAE4 Ty3/gypsy retrotransposon protein

2.1e-234

85.59

Show/hide

Query:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI
        +D+MRYCEECAICQRNKSSAL+P GLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKY HFLLLKHPFTAKMVAETF++EV+RLHG PRSI
Subjt:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI

Query:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD
        VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGE+P EWSQW+HWAEYWYNTTYHSSIGITPFQAVYGRLPPPL+YYGD
Subjt:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD

Query:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP
        METPNSTLDQ LKDRD+ LGALKEHLKLAQERMKKQAD+KRREVEFQEGD VFLKLRPYRQ S+RKKRNEKLSPKYF PYR+LERIG+VAYRLELPA+A 
Subjt:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP

Query:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL
        IHPVFHVSQLKKAVGRGETVQ L PY+NEN+EWITQPEEVY YRKNP+T+EWEALISWKGL PHEATWE+CTDMKYQFPEFHLEDKVDLEEESDARP IL
Subjt:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL

Query:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPRRHVVDGKKARRMGTRKGDPQ
        FTY+++NKKKHETNEG     +    +  P +  V+G++++  G ++GDPQ
Subjt:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPRRHVVDGKKARRMGTRKGDPQ

A0A5D3BBV5 Ty3/gypsy retrotransposon protein

4.4e-232

89.49

Show/hide

Query:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI
        KDIMRYCEECAICQRNKSSALSP GLLMPL+IPDAIWSDISMDFIEGLPKSKGWDVI VVVDRLSKYGHFLLLKHPF+AKMVAETFV+EV+RLHG PRSI
Subjt:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI

Query:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD
        VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKS+ETYLRCFC E+P+EWSQW+HWAEYWYNTTYHSSIGITPFQAVYGRLPPPL+YYGD
Subjt:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD

Query:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP
        METPNSTLDQ LKDRD+ LGALKEHLKLAQERMKK AD KRREVEFQEGD VFLKLRPYRQ SLRKKRNEKLSPKYF PYR+LERIG+VAY+LELPA A 
Subjt:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP

Query:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL
        IHPVFHVSQLKKAVGRGETVQPLNPYMN N+EWIT+PEEVYSYRKNPATKEWEALISWKGL PHEATWE+CTDMKYQFP+FHLEDKVDLEEESDARP IL
Subjt:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL

Query:  FTYNKRNKKKHETNEGGQVAGKVMAMKP
        FTY ++NKKKHE  +  QVA ++MAM+P
Subjt:  FTYNKRNKKKHETNEGGQVAGKVMAMKP

A0A5D3C5N7 Ty3/gypsy retrotransposon protein

2.9e-236

85.53

Show/hide

Query:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI
        +D+MRYCEECAICQRNKSSAL+P GLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKY HFLLLKHPFTAKMVAETF++EV+RLHG PRSI
Subjt:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI

Query:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD
        VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGE+P EWSQW+HWAEYWYNTTYHSSIGITPFQAVYGRLPPPL+YYGD
Subjt:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD

Query:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP
        METPNSTLDQ LKDRD+ LGALKEHLKLAQERMKKQAD+KRREVEFQEGD VFLKLRPYRQ S+RKKRNEKLSPKYF PYR+LERIG+VAYRLELPA+A 
Subjt:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP

Query:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL
        IHPVFHVSQLKKAVGRGETVQ L PY+NEN+EWITQPEEVY YRKNP+T+EWEALISWKGL PHEATWE+CTDMKYQFPEFHLEDKVDLEEESDARP IL
Subjt:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL

Query:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPRRHVVDGKKARRMGTRKGDPQLVSSG
        FTY+++NKKKHETNEG     +    +  P +  V+G++++  G ++GDPQ VSSG
Subjt:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPRRHVVDGKKARRMGTRKGDPQLVSSG

A0A5D3DM31 Ty3/gypsy retrotransposon protein

2.9e-236

85.53

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Query:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI
        +D+MRYCEECAICQRNKSSAL+P GLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKY HFLLLKHPFTAKMVAETF++EV+RLHG PRSI
Subjt:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI

Query:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD
        VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGE+P EWSQW+HWAEYWYNTTYHSSIGITPFQAVYGRLPPPL+YYGD
Subjt:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD

Query:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP
        METPNSTLDQ LKDRD+ LGALKEHLKLAQERMKKQAD+KRREVEFQEGD VFLKLRPYRQ S+RKKRNEKLSPKYF PYR+LERIG+VAYRLELPA+A 
Subjt:  METPNSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAP

Query:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL
        IHPVFHVSQLKKAVGRGETVQ L PY+NEN+EWITQPEEVY YRKNP+T+EWEALISWKGL PHEATWE+CTDMKYQFPEFHLEDKVDLEEESDARP IL
Subjt:  IHPVFHVSQLKKAVGRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLIL

Query:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPRRHVVDGKKARRMGTRKGDPQLVSSG
        FTY+++NKKKHETNEG     +    +  P +  V+G++++  G ++GDPQ VSSG
Subjt:  FTYNKRNKKKHETNEGGQVAGKVMAMKPIPRRHVVDGKKARRMGTRKGDPQLVSSG

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

3.2e-46

35.85

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Query:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI
        K I  Y + C  CQ NKS    P G L P+   +  W  +SMDFI  LP+S G++ + VVVDR SK    +      TA+  A  F + VI   G P+ I
Subjt:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI

Query:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD
        ++D D +F S  WK+        +  S  Y PQ+DGQTE  N++VE  LRC C   P+ W   I   +  YN   HS+  +TPF+ V+ R  P L     
Subjt:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD

Query:  METP--NSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREV-EFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPA
        +E P  +   D++ ++       +KEHL     +MKK  D K +E+ EFQ GD V +K    R  +    ++ KL+P +  P+ +L++ G   Y L+LP 
Subjt:  METP--NSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREV-EFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPA

Query:  DAPIH---PVFHVSQLKK
        D+  H     FHVS L+K
Subjt:  DAPIH---PVFHVSQLKK

P0CT35 Transposon Tf2-2 polyprotein

3.2e-46

35.85

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Query:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI
        K I  Y + C  CQ NKS    P G L P+   +  W  +SMDFI  LP+S G++ + VVVDR SK    +      TA+  A  F + VI   G P+ I
Subjt:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI

Query:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD
        ++D D +F S  WK+        +  S  Y PQ+DGQTE  N++VE  LRC C   P+ W   I   +  YN   HS+  +TPF+ V+ R  P L     
Subjt:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD

Query:  METP--NSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREV-EFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPA
        +E P  +   D++ ++       +KEHL     +MKK  D K +E+ EFQ GD V +K    R  +    ++ KL+P +  P+ +L++ G   Y L+LP 
Subjt:  METP--NSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREV-EFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPA

Query:  DAPIH---PVFHVSQLKK
        D+  H     FHVS L+K
Subjt:  DAPIH---PVFHVSQLKK

P0CT36 Transposon Tf2-3 polyprotein

3.2e-46

35.85

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Query:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI
        K I  Y + C  CQ NKS    P G L P+   +  W  +SMDFI  LP+S G++ + VVVDR SK    +      TA+  A  F + VI   G P+ I
Subjt:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI

Query:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD
        ++D D +F S  WK+        +  S  Y PQ+DGQTE  N++VE  LRC C   P+ W   I   +  YN   HS+  +TPF+ V+ R  P L     
Subjt:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD

Query:  METP--NSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREV-EFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPA
        +E P  +   D++ ++       +KEHL     +MKK  D K +E+ EFQ GD V +K    R  +    ++ KL+P +  P+ +L++ G   Y L+LP 
Subjt:  METP--NSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREV-EFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPA

Query:  DAPIH---PVFHVSQLKK
        D+  H     FHVS L+K
Subjt:  DAPIH---PVFHVSQLKK

P0CT41 Transposon Tf2-12 polyprotein

3.2e-46

35.85

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Query:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI
        K I  Y + C  CQ NKS    P G L P+   +  W  +SMDFI  LP+S G++ + VVVDR SK    +      TA+  A  F + VI   G P+ I
Subjt:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI

Query:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD
        ++D D +F S  WK+        +  S  Y PQ+DGQTE  N++VE  LRC C   P+ W   I   +  YN   HS+  +TPF+ V+ R  P L     
Subjt:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD

Query:  METP--NSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREV-EFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPA
        +E P  +   D++ ++       +KEHL     +MKK  D K +E+ EFQ GD V +K    R  +    ++ KL+P +  P+ +L++ G   Y L+LP 
Subjt:  METP--NSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREV-EFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPA

Query:  DAPIH---PVFHVSQLKK
        D+  H     FHVS L+K
Subjt:  DAPIH---PVFHVSQLKK

Q9UR07 Transposon Tf2-11 polyprotein

3.2e-46

35.85

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Query:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI
        K I  Y + C  CQ NKS    P G L P+   +  W  +SMDFI  LP+S G++ + VVVDR SK    +      TA+  A  F + VI   G P+ I
Subjt:  KDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSI

Query:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD
        ++D D +F S  WK+        +  S  Y PQ+DGQTE  N++VE  LRC C   P+ W   I   +  YN   HS+  +TPF+ V+ R  P L     
Subjt:  VSDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGD

Query:  METP--NSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREV-EFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPA
        +E P  +   D++ ++       +KEHL     +MKK  D K +E+ EFQ GD V +K    R  +    ++ KL+P +  P+ +L++ G   Y L+LP 
Subjt:  METP--NSTLDQHLKDRDVALGALKEHLKLAQERMKKQADTKRREV-EFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPA

Query:  DAPIH---PVFHVSQLKK
        D+  H     FHVS L+K
Subjt:  DAPIH---PVFHVSQLKK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGGACATTATGAGGTATTGTGAAGAGTGCGCGATATGCCAGCGAAATAAGTCATCAGCATTGTCACCGACAGGGCTACTGATGCCATTGGAAATTCCAGAC
GCGATATGGAGTGACATCTCCATGGACTTCATTGAAGGTTTGCCAAAATCCAAGGGATGGGATGTGATACTAGTGGTGGTGGATAGGCTGAGTAAATATGGCCAT
TTTCTGCTATTGAAGCATCCTTTCACAGCCAAGATGGTGGCAGAAACTTTTGTCAGGGAAGTGATCCGGCTTCATGGGTGTCCGAGGTCGATAGTATCTGACAGG
GACAAGGTCTTCCTAAGTCATTTCTGGAAGGAACTCTTCCGTTTAGCAGGCACTAAGCTGAACCGAAGCTCCTCCTATCACCCCCAATCGGATGGTCAGACCGAG
GTGGTGAACAAGAGCGTTGAGACATATTTGAGGTGTTTTTGTGGGGAAAGACCGCACGAATGGAGCCAGTGGATACATTGGGCAGAATATTGGTACAATACTACC
TATCACAGTTCAATTGGCATCACTCCTTTCCAAGCTGTCTATGGACGCCTACCTCCTCCACTGGTATACTATGGAGACATGGAGACACCAAATTCGACACTGGAC
CAGCACTTGAAGGACAGAGATGTAGCATTGGGGGCGTTGAAGGAACACCTGAAATTAGCTCAAGAAAGGATGAAGAAACAGGCTGACACCAAGAGAAGGGAAGTC
GAATTCCAAGAAGGGGATTTTGTGTTCCTCAAATTGCGACCTTACCGACAGGTATCACTCAGAAAGAAAAGGAATGAAAAGCTGTCACCAAAGTACTTCGAGCCT
TATCGGATCTTAGAAAGAATTGGAGAAGTGGCATACAGACTTGAACTTCCTGCAGATGCTCCTATCCATCCCGTGTTCCATGTGTCACAGTTGAAGAAAGCTGTT
GGGAGAGGAGAAACTGTGCAACCATTGAATCCATACATGAATGAAAACTATGAATGGATCACGCAACCCGAAGAAGTTTACAGCTATCGCAAGAACCCAGCAACT
AAAGAATGGGAGGCCTTGATCAGTTGGAAGGGACTGCTGCCACATGAGGCAACATGGGAGAATTGCACTGACATGAAGTACCAGTTTCCGGAATTCCACCTTGAG
GACAAGGTGGATTTGGAAGAGGAGAGTGATGCTAGGCCCCTAATCTTATTTACGTATAATAAGAGGAATAAGAAGAAACATGAAACCAATGAGGGGGGACAGGTG
GCAGGGAAGGTCATGGCCATGAAACCAATCCCGAGGAGGCACGTGGTGGATGGGAAGAAAGCAAGGAGGATGGGGACCAGAAAGGGGGACCCACAGTTAGTTAGT
AGTGGGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKDIMRYCEECAICQRNKSSALSPTGLLMPLEIPDAIWSDISMDFIEGLPKSKGWDVILVVVDRLSKYGHFLLLKHPFTAKMVAETFVREVIRLHGCPRSIVSDR
DKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGERPHEWSQWIHWAEYWYNTTYHSSIGITPFQAVYGRLPPPLVYYGDMETPNSTLD
QHLKDRDVALGALKEHLKLAQERMKKQADTKRREVEFQEGDFVFLKLRPYRQVSLRKKRNEKLSPKYFEPYRILERIGEVAYRLELPADAPIHPVFHVSQLKKAV
GRGETVQPLNPYMNENYEWITQPEEVYSYRKNPATKEWEALISWKGLLPHEATWENCTDMKYQFPEFHLEDKVDLEEESDARPLILFTYNKRNKKKHETNEGGQV
AGKVMAMKPIPRRHVVDGKKARRMGTRKGDPQLVSSG

Cmc01g0015111 (gene) of Melon (Charmono) v1.1 genome