CuGenDBv2

Gene ID	Cmc01g0015721
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Genome location	CMiso1.1chr01:13569584..13570060
RNA-Seq Expression	Cmc01g0015721
Synteny	Cmc01g0015721
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0015074 - DNA integration (biological process) GO:0005634 - nucleus (cellular component) GO:0016020 - membrane (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037196.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.4e-70

83.77

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Query:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL
        MCPED+EKTAFRTH+GHYEFLVM FGLTNAPSTFQALMNQVFKPYLRRFVLVFFDD+L YS+ +EEHVQHLE VL LL+E EL VN++KCSFAKPRISYL
Subjt:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL

Query:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP
        GHFIS +GIE DP+KIRAV EWP P+NVRE+RGFLGLTGYYRRFV+NYG IAAP
Subjt:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP

KAA0039715.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]

8.0e-71

83.77

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Query:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL
        MCPED+EKTAFRTH+GHYEF+VM FGLTN PSTFQALMNQVFKP+LRRFVLVFFDD+L YSK +EEH QHLE V  +LRESEL  N DKC FA+PRISYL
Subjt:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL

Query:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP
        GH+ISVKGIEVDP+KIRAV+EWP PSNVREMRGFLGLTGYYRRFVQNYG IAAP
Subjt:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP

KAA0050511.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.0e-70

83.12

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Query:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL
        MCPED+EKTAFRTH+GHYEFLVM FGLTNAPSTFQALMNQVFKPYLRRFVLVFFDD+L YS+ +EEH+QHLE VL LL+E EL VN++KCSFAKPRISYL
Subjt:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL

Query:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP
        GHFIS +GIE DP+KIRAV EWP P+NVRE+RGFLGLTGYYRRFV+NYG IAAP
Subjt:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP

KAA0055925.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

9.5e-72

85.71

Show/hide

Query:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL
        MCPED+EKTAFRTH+GHYEF+VM F LTNAPSTFQALMNQVFKP+LRRFVLVFFDD+L YSK +EEHVQHLE VL +LRESEL  N DKC FAKPRISYL
Subjt:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL

Query:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP
        GH+ISVKGIEVDP+KIRAVKEWP PSN+REMRGFLGLTGYYRRFVQNYG IAAP
Subjt:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP

TYK13876.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.4e-70

83.77

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Query:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL
        MCPED+EKTAFRTH+GHYEFLVM FGLTNAPSTFQALMNQVFKPYLRRFVLVFFDD+L YS+ +EEHVQHLE VL LL+E EL VN++KCSFAKPRISYL
Subjt:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL

Query:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP
        GHFIS +GIE DP+KIRAV EWP P+NVRE+RGFLGLTGYYRRFV+NYG IAAP
Subjt:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T4Y0 Ty3/gypsy retrotransposon protein

6.6e-71

83.77

Show/hide

Query:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL
        MCPED+EKTAFRTH+GHYEFLVM FGLTNAPSTFQALMNQVFKPYLRRFVLVFFDD+L YS+ +EEHVQHLE VL LL+E EL VN++KCSFAKPRISYL
Subjt:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL

Query:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP
        GHFIS +GIE DP+KIRAV EWP P+NVRE+RGFLGLTGYYRRFV+NYG IAAP
Subjt:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP

A0A5A7TE42 Transposon Tf2-6 polyprotein

3.9e-71

83.77

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Query:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL
        MCPED+EKTAFRTH+GHYEF+VM FGLTN PSTFQALMNQVFKP+LRRFVLVFFDD+L YSK +EEH QHLE V  +LRESEL  N DKC FA+PRISYL
Subjt:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL

Query:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP
        GH+ISVKGIEVDP+KIRAV+EWP PSNVREMRGFLGLTGYYRRFVQNYG IAAP
Subjt:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP

A0A5A7UAE4 Ty3/gypsy retrotransposon protein

1.9e-70

83.12

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Query:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL
        MCPED+EKTAFRTH+GHYEFLVM FGLTNAPSTFQALMNQVFKPYLRRFVLVFFDD+L YS+ +EEH+QHLE VL LL+E EL VN++KCSFAKPRISYL
Subjt:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL

Query:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP
        GHFIS +GIE DP+KIRAV EWP P+NVRE+RGFLGLTGYYRRFV+NYG IAAP
Subjt:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP

A0A5A7UQM9 Ty3/gypsy retrotransposon protein

4.6e-72

85.71

Show/hide

Query:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL
        MCPED+EKTAFRTH+GHYEF+VM F LTNAPSTFQALMNQVFKP+LRRFVLVFFDD+L YSK +EEHVQHLE VL +LRESEL  N DKC FAKPRISYL
Subjt:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL

Query:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP
        GH+ISVKGIEVDP+KIRAVKEWP PSN+REMRGFLGLTGYYRRFVQNYG IAAP
Subjt:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP

A0A5D3CU05 Ty3/gypsy retrotransposon protein

6.6e-71

83.77

Show/hide

Query:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL
        MCPED+EKTAFRTH+GHYEFLVM FGLTNAPSTFQALMNQVFKPYLRRFVLVFFDD+L YS+ +EEHVQHLE VL LL+E EL VN++KCSFAKPRISYL
Subjt:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL

Query:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP
        GHFIS +GIE DP+KIRAV EWP P+NVRE+RGFLGLTGYYRRFV+NYG IAAP
Subjt:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

9.0e-41

48.05

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Query:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL
        M PE V KTAF T  GHYE+L M FGL NAP+TFQ  MN + +P L +  LV+ DD++ +S  ++EH+Q L  V E L ++ L + LDKC F K   ++L
Subjt:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL

Query:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP
        GH ++  GI+ +P+KI A++++PIP+  +E++ FLGLTGYYR+F+ N+  IA P
Subjt:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP

P20825 Retrovirus-related Pol polyprotein from transposon 297

6.5e-39

45.22

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Query:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL
        M  E + KTAF T  GHYE+L M FGL NAP+TFQ  MN + +P L +  LV+ DD++ +S  + EH+  ++ V   L ++ L + LDKC F K   ++L
Subjt:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL

Query:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAPSRS
        GH ++  GI+ +P K++A+  +PIP+  +E+R FLGLTGYYR+F+ NY  IA P  S
Subjt:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAPSRS

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

1.9e-30

44.16

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Query:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL
        M P+D  KTAF T  G YE+ VM FGL NAPSTF   M   F+    RFV V+ DD+L +S+  EEH +HL+ VLE L+   L V   KC FA     +L
Subjt:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL

Query:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP
        G+ I ++ I     K  A++++P P  V++ + FLG+  YYRRF+ N  +IA P
Subjt:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

5.7e-35

40.26

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Query:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL
        M   D+ KTAF T  G YEFL + FGL NAP+ FQ +++ + + ++ +   V+ DD++ +S++ + H ++L  VL  L ++ L VNL+K  F   ++ +L
Subjt:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL

Query:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP
        G+ ++  GI+ DPKK+RA+ E P P++V+E++ FLG+T YYR+F+Q+Y ++A P
Subjt:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP

Q99315 Transposon Ty3-G Gag-Pol polyprotein

1.9e-30

44.16

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Query:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL
        M P+D  KTAF T  G YE+ VM FGL NAPSTF   M   F+    RFV V+ DD+L +S+  EEH +HL+ VLE L+   L V   KC FA     +L
Subjt:  MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYL

Query:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP
        G+ I ++ I     K  A++++P P  V++ + FLG+  YYRRF+ N  +IA P
Subjt:  GHFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

5.6e-22

50.56

Show/hide

Query:  VQHLEAVLELLRESELDVNLDKCSFAKPRISYLG--HFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP
        + HL  VL++  + +   N  KC+F +P+I+YLG  H IS +G+  DP K+ A+  WP P N  E+RGFLGLTGYYRRFV+NYG+I  P
Subjt:  VQHLEAVLELLRESELDVNLDKCSFAKPRISYLG--HFISVKGIEVDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAP

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTGCCCTGAAGACGTAGAGAAAACAGCTTTCCGAACACACAAAGGACACTATGAGTTCCTAGTGATGTCGTTCGGACTGACAAATGCCCCTTCGACCTTTCAAGCCCT
GATGAACCAGGTATTTAAGCCCTATTTGAGAAGATTTGTACTTGTTTTCTTTGATGATGTTTTAGCCTATAGTAAGGAAGTGGAGGAGCATGTGCAACACCTTGAAGCGG
TGTTGGAACTTTTGAGGGAAAGTGAGTTGGACGTCAACCTCGACAAGTGCAGTTTTGCTAAACCAAGAATTAGCTACTTAGGTCATTTTATATCCGTGAAAGGCATTGAG
GTGGATCCTAAAAAAATAAGGGCAGTGAAGGAATGGCCAATCCCTTCGAATGTGAGGGAGATGAGGGGATTTTTGGGGCTCACGGGCTATTACCGTCGCTTTGTACAGAA
TTATGGGAGAATAGCAGCCCCCTCACGCAGCTACTGA

mRNA sequence

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Protein sequence

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MCPEDVEKTAFRTHKGHYEFLVMSFGLTNAPSTFQALMNQVFKPYLRRFVLVFFDDVLAYSKEVEEHVQHLEAVLELLRESELDVNLDKCSFAKPRISYLGHFISVKGIE
VDPKKIRAVKEWPIPSNVREMRGFLGLTGYYRRFVQNYGRIAAPSRSY

Cmc01g0015721 (gene) of Melon (Charmono) v1.1 genome