; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0016201 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0016201
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr01:14293093..14293839
RNA-Seq ExpressionCmc01g0016201
SyntenyCmc01g0016201
Gene Ontology termsGO:0000723 - telomere maintenance (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0006303 - double-strand break repair via nonhomologous end joining (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0043564 - Ku70:Ku80 complex (cellular component)
GO:0016020 - membrane (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0042162 - telomeric DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
GO:0003684 - damaged DNA binding (molecular function)
GO:0003678 - DNA helicase activity (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily
IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025181.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.0e-12593.8Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN
        MEEELSMIEKNKTWILVDRPQDRKVIGVKWV RTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKS+FLN
Subjt:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN

Query:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM
        G+LQEEIYVEQPEGCEKQGE NKVYL KKALYGLK A RAWYSKIDEHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVD LLV GNNADHIQNFKWEMM
Subjt:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM

Query:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR
        KMFEMTDLGLMSYFLGIEIKQG+GEVFICQKKYAKEIL+  +
Subjt:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR

KAA0035947.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.0e-12593.8Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN
        MEEELSMIEKNKTWILVDRPQDRKVIGVKWV RTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKS+FLN
Subjt:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN

Query:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM
        G+LQEEIYVEQPEGCEKQGE NKVYL KKALYGLK A RAWYSKIDEHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVD LLV GNNADHIQNFKWEMM
Subjt:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM

Query:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR
        KMFEMTDLGLMSYFLGIEIKQG+GEVFICQKKYAKEIL+  +
Subjt:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR

KAA0041382.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.8e-12594.21Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN
        MEEELSMIEKNKTWILVDRPQDRKVIGVKWV RTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKS+FLN
Subjt:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN

Query:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM
        G+LQEEIYVEQPEGCEKQGE NKVYL KKALYGLK A RAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVD LLV GNNADHIQNFKWEMM
Subjt:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM

Query:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR
        KMFEMTDLGLMSYFLGIEIKQG+GEVFICQKKYAKEIL+  +
Subjt:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR

TYJ95793.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.0e-12593.8Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN
        MEEELSMIEKNKTWILVDRPQDRKVIGVKWV RTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKS+FLN
Subjt:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN

Query:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM
        G+LQEEIYVEQPEGCEKQGE NKVYL KKALYGLK A RAWYSKIDEHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVD LLV GNNADHIQNFKWEMM
Subjt:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM

Query:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR
        KMFEMTDLGLMSYFLGIEIKQG+GEVFICQKKYAKEIL+  +
Subjt:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR

TYK16957.1 ATP-dependent DNA helicase 2 subunit KU70 [Cucumis melo var. makuwa]4.0e-12593.8Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN
        MEEELSMIEKNKTWILVDRPQDRKVIGVKWV RTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKS+FLN
Subjt:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN

Query:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM
        G+LQEEIYVEQPEGCEKQGE NKVYL KKALYGLK A RAWYSKIDEHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVD LLV GNNADHIQNFKWEMM
Subjt:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM

Query:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR
        KMFEMTDLGLMSYFLGIEIKQG+GEVFICQKKYAKEIL+  +
Subjt:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR

TrEMBL top hitse value%identityAlignment
A0A5A7TD67 Retrovirus-related Pol polyprotein from transposon TNT 1-948.7e-12694.21Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN
        MEEELSMIEKNKTWILVDRPQDRKVIGVKWV RTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKS+FLN
Subjt:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN

Query:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM
        G+LQEEIYVEQPEGCEKQGE NKVYL KKALYGLK A RAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVD LLV GNNADHIQNFKWEMM
Subjt:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM

Query:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR
        KMFEMTDLGLMSYFLGIEIKQG+GEVFICQKKYAKEIL+  +
Subjt:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR

A0A5D3BL45 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-12593.8Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN
        MEEELSMIEKNKTWILVDRPQDRKVIGVKWV RTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKS+FLN
Subjt:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN

Query:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM
        G+LQEEIYVEQPEGCEKQGE NKVYL KKALYGLK A RAWYSKIDEHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVD LLV GNNADHIQNFKWEMM
Subjt:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM

Query:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR
        KMFEMTDLGLMSYFLGIEIKQG+GEVFICQKKYAKEIL+  +
Subjt:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR

A0A5D3CYZ9 ATP-dependent DNA helicase 2 subunit KU701.9e-12593.8Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN
        MEEELSMIEKNKTWILVDRPQDRKVIGVKWV RTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKS+FLN
Subjt:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN

Query:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM
        G+LQEEIYVEQPEGCEKQGE NKVYL KKALYGLK A RAWYSKIDEHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVD LLV GNNADHIQNFKWEMM
Subjt:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM

Query:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR
        KMFEMTDLGLMSYFLGIEIKQG+GEVFICQKKYAKEIL+  +
Subjt:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR

A0A5D3DMJ1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-12593.8Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN
        MEEELSMIEKNKTWILVDRPQDRKVIGVKWV RTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKS+FLN
Subjt:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN

Query:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM
        G+LQEEIYVEQPEGCEKQGE NKVYL KKALYGLK A RAWYSKIDEHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVD LLV GNNADHIQNFKWEMM
Subjt:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM

Query:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR
        KMFEMTDLGLMSYFLGIEIKQG+GEVFICQKKYAKEIL+  +
Subjt:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR

A0A5D3E2V7 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-12593.8Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN
        MEEELSMIEKNKTWILVDRPQDRKVIGVKWV RTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKS+FLN
Subjt:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN

Query:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM
        G+LQEEIYVEQPEGCEKQGE NKVYL KKALYGLK A RAWYSKIDEHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVD LLV GNNADHIQNFKWEMM
Subjt:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMM

Query:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR
        KMFEMTDLGLMSYFLGIEIKQG+GEVFICQKKYAKEIL+  +
Subjt:  KMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLR

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.4e-4235.86Show/hide
Query:  ELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLNGIL
        EL+  + N TW +  RP+++ ++  +WV   K N  G+  ++KARLV +G+ Q + +DY +TFAPVAR+ + R + ++  Q   K++Q+DVK++FLNG L
Subjt:  ELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLNGIL

Query:  QEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYV--KHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMMK
        +EEIY+  P+G     +   V    KA+YGLK A R W+   ++ L    F+ S  +  +Y+  K N    + V LYVD +++   +   + NFK  +M+
Subjt:  QEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYV--KHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMMK

Query:  MFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEIL
         F MTDL  + +F+GI I+  + ++++ Q  Y K+IL
Subjt:  MFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEIL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.5e-4539Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN
        M+EE+  ++KN T+ LV+ P+ ++ +  KWV + K + D  + ++KARLVVKG+ Q  G+D+ + F+PV +M +IR + ++AA    ++ QLDVK++FL+
Subjt:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN

Query:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKH-NGTSILIVSLYVDGLLVRGNNADHIQNFKWEM
        G L+EEIY+EQPEG E  G+ + V    K+LYGLK A R WY K D  + S  +LK+ S+  +Y K  +  + +I+ LYVD +L+ G +   I   K ++
Subjt:  GILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKH-NGTSILIVSLYVDGLLVRGNNADHIQNFKWEM

Query:  MKMFEMTDLGLMSYFLGIEI--KQGKGEVFICQKKYAKEIL
         K F+M DLG     LG++I  ++   ++++ Q+KY + +L
Subjt:  MKMFEMTDLGLMSYFLGIEI--KQGKGEVFICQKKYAKEIL

P92520 Uncharacterized mitochondrial protein AtMg008208.4e-1746.43Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQ
        M+EEL  + +NKTWILV  P ++ ++G KWV +TKL++DG++++ KARLV KG+ Q  G+ + +T++PV R  TIR +  +A Q
Subjt:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQ

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.3e-4638.49Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDR-KVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFL
        M  E++    N TW LV  P     ++G +W+   K N+DGS+N++KARLV KGY Q  G+DY++TF+PV +  +IR++  +A  + W + QLDV ++FL
Subjt:  MEEELSMIEKNKTWILVDRPQDR-KVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFL

Query:  NGILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEM
         G L +++Y+ QP G   +   N V   +KALYGLK A RAWY ++  +LL++GF+ S+S+++L+V   G SI+ + +YVD +L+ GN+   + N    +
Subjt:  NGILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEM

Query:  MKMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEIL
         + F + D   + YFLGIE K+    + + Q++Y  ++L
Subjt:  MKMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEIL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.3e-4535.89Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDR-KVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFL
        M  E++    N TW LV  P     ++G +W+   K N+DGS+N++KARLV KGY Q  G+DY++TF+PV +  +IR++  +A  + W + QLDV ++FL
Subjt:  MEEELSMIEKNKTWILVDRPQDR-KVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFL

Query:  NGILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEM
         G L +E+Y+ QP G   +   + V   +KA+YGLK A RAWY ++  +LL++GF+ S+S+++L+V   G SI+ + +YVD +L+ GN+   +++    +
Subjt:  NGILQEEIYVEQPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEM

Query:  MKMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLRWMSVR
         + F + +   + YFLGIE K+    + + Q++Y  ++L     ++ +
Subjt:  MKMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRSLRWMSVR

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.1e-5140.5Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN
        M++E+  +E   TW +   P ++K IG KWV + K N+DG+I ++KARLV KGY Q  G+D+ +TF+PV ++ +++L+ AI+A   + L+QLD+ ++FLN
Subjt:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLN

Query:  GILQEEIYVEQPEG-CEKQGEG---NKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFK
        G L EEIY++ P G   +QG+    N V   KK++YGLK A R W+ K    L+  GF++S S+ T ++K   T  L V +YVD +++  NN   +   K
Subjt:  GILQEEIYVEQPEG-CEKQGEG---NKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFK

Query:  WEMMKMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEIL
         ++   F++ DLG + YFLG+EI +    + ICQ+KYA ++L
Subjt:  WEMMKMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEIL

ATMG00810.1 DNA/RNA polymerases superfamily protein8.0e-0739.06Show/hide
Query:  LYVDGLLVRGNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRS
        LYVD +L+ G++   +    +++   F M DLG + YFLGI+IK     +F+ Q KYA++IL +
Subjt:  LYVDGLLVRGNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEIKQGKGEVFICQKKYAKEILRS

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)5.9e-1846.43Show/hide
Query:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQ
        M+EEL  + +NKTWILV  P ++ ++G KWV +TKL++DG++++ KARLV KG+ Q  G+ + +T++PV R  TIR +  +A Q
Subjt:  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGGAGTTGTCAATGATAGAAAAGAACAAAACTTGGATCCTTGTTGACAGACCTCAAGATAGGAAGGTAATTGGAGTTAAATGGGTATTGAGAACCAAGCTTAA
TGCTGATGGCTCGATTAACAAGCACAAAGCCAGGCTTGTGGTTAAAGGGTATGCTCAAATCTTTGGTGTTGATTACTCTGATACTTTTGCTCCTGTTGCTAGAATGGACA
CAATCAGGTTACTATTTGCAATAGCTGCACAAAAGGGCTGGAAATTGTATCAGTTGGATGTGAAATCATCTTTTTTGAATGGTATCTTACAAGAAGAAATTTATGTTGAG
CAGCCCGAAGGATGTGAGAAGCAAGGTGAAGGAAATAAAGTCTATCTTTTCAAGAAGGCTCTTTATGGTTTAAAACATGCTCTAAGAGCTTGGTATAGCAAAATTGATGA
ACATTTACTGAGCTTGGGATTTTTGAAAAGTCTATCAGAATCAACCTTATATGTTAAGCACAATGGTACTAGCATTCTTATTGTTTCACTGTATGTTGATGGCCTACTAG
TTAGAGGAAATAATGCAGATCATATTCAAAATTTCAAATGGGAGATGATGAAGATGTTTGAAATGACAGATCTCGGGCTCATGTCCTACTTCCTTGGCATAGAGATCAAG
CAAGGGAAAGGTGAAGTTTTCATCTGCCAGAAAAAATATGCAAAGGAAATACTAAGAAGTTTAAGATGGATGAGTGTAAGGCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAGGAGTTGTCAATGATAGAAAAGAACAAAACTTGGATCCTTGTTGACAGACCTCAAGATAGGAAGGTAATTGGAGTTAAATGGGTATTGAGAACCAAGCTTAA
TGCTGATGGCTCGATTAACAAGCACAAAGCCAGGCTTGTGGTTAAAGGGTATGCTCAAATCTTTGGTGTTGATTACTCTGATACTTTTGCTCCTGTTGCTAGAATGGACA
CAATCAGGTTACTATTTGCAATAGCTGCACAAAAGGGCTGGAAATTGTATCAGTTGGATGTGAAATCATCTTTTTTGAATGGTATCTTACAAGAAGAAATTTATGTTGAG
CAGCCCGAAGGATGTGAGAAGCAAGGTGAAGGAAATAAAGTCTATCTTTTCAAGAAGGCTCTTTATGGTTTAAAACATGCTCTAAGAGCTTGGTATAGCAAAATTGATGA
ACATTTACTGAGCTTGGGATTTTTGAAAAGTCTATCAGAATCAACCTTATATGTTAAGCACAATGGTACTAGCATTCTTATTGTTTCACTGTATGTTGATGGCCTACTAG
TTAGAGGAAATAATGCAGATCATATTCAAAATTTCAAATGGGAGATGATGAAGATGTTTGAAATGACAGATCTCGGGCTCATGTCCTACTTCCTTGGCATAGAGATCAAG
CAAGGGAAAGGTGAAGTTTTCATCTGCCAGAAAAAATATGCAAAGGAAATACTAAGAAGTTTAAGATGGATGAGTGTAAGGCAGTAA
Protein sequenceShow/hide protein sequence
MEEELSMIEKNKTWILVDRPQDRKVIGVKWVLRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSSFLNGILQEEIYVE
QPEGCEKQGEGNKVYLFKKALYGLKHALRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDGLLVRGNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEIK
QGKGEVFICQKKYAKEILRSLRWMSVRQ