; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0016281 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0016281
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr01:14385677..14386788
RNA-Seq ExpressionCmc01g0016281
SyntenyCmc01g0016281
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR041588 - Integrase zinc-binding domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652794.1 hypothetical protein Csa_022828 [Cucumis sativus]5.3e-10753.1Show/hide
Query:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL
        M+Q+L  FLN+F+VVYFDDILIYS + +D ++H++L+F ALQ+++L INLKKC F    I FL FIIS + + +D +K+++++ W  PKT K+IQ F+GL
Subjt:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL

Query:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA-----------------------MEWELVLSFLKE
         SFYR+FIKNFS+I AP+T+CLKKG+F W + ++ SF  +K  LAS PVLKL  FD PFEV VDA                         +    S  ++
Subjt:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA-----------------------MEWELVLSFLKE

Query:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAFNHLPT---TDED
        ELYALV+ALKQWEHYLL+  F+ LT+HFSLK+L + K I++MHARW+ ++QRFDF+IKH + K N+VADALSRK  LLT L ++I AF+HL T   TD D
Subjt:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAFNHLPT---TDED

Query:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQ
        F  IW +C++H   +DYH+V  FLFKG+ LC+PHTSLREA+IKE HS  LA HFG++KT   +  +F+WPQ
Subjt:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQ

TYK23243.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]3.3e-10177.04Show/hide
Query:  MDERKVEAVTKWSIPKTVKEIQAFIGLTSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDAMEWELVLS
        MDERKVEAVTKWSIPKTVKEIQAFIGLTSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDAMEWELVLS
Subjt:  MDERKVEAVTKWSIPKTVKEIQAFIGLTSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDAMEWELVLS

Query:  FLKEELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAFNHLPTTDE
        FLKE                                                          HQASKENRVADALSRKETLLTVLSTEITAFNHLPTTDE
Subjt:  FLKEELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAFNHLPTTDE

Query:  DFGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQ
        DFGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFG+
Subjt:  DFGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQ

VVA31129.1 PREDICTED: reverse mRNAase, partial [Prunus dulcis]1.4e-9949.06Show/hide
Query:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL
        M+QVL  F+  FVVVYFDDILIYS  +++ + HL+ V + L+++KL++NLKKC FCT ++ FLGF++ EN +++D+ K++A+  W  PKTV E+++F GL
Subjt:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL

Query:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA---------MEWELVLSFLKE--------------
         +FYR+F+++FSSI AP+T+CLKKG F W E+Q+ SF  IK KL + PVL L  F+  FEV  DA          + +  ++F  E              
Subjt:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA---------MEWELVLSFLKE--------------

Query:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAF---NHLPTTDED
        E YA+V+ALKQWEHYL+ KEFV  T+H +LKY+ + KNI+KMHARWV+++Q+F F+IKH + K NRVADALSR+ +LL  L+ E+  F     L   D+D
Subjt:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAF---NHLPTTDED

Query:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR
        F +IW+ CT+     DY L EG+LFKGNQLCIP +SLRE LI++ H G L+ H G++KT   + +RFYWPQ +
Subjt:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR

XP_016649787.1 PREDICTED: uncharacterized protein LOC103333039 [Prunus mume]2.4e-9948.53Show/hide
Query:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL
        M+QVL  F+  FVVVYFDDILIYS  +++ + HL+ V + L+++KL++NLKKC FCT ++ FLGF++ EN +++D+ K++A+  W  PKTV E+++F GL
Subjt:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL

Query:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA---------MEWELVLSFLKE--------------
         +FYR+F+K+FS++ AP+T+CLKKG F W E+Q+ SF  IK KL + PVL L  F+  FEV  DA          + +  ++F  E              
Subjt:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA---------MEWELVLSFLKE--------------

Query:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAF---NHLPTTDED
        E YA+V+ALKQWEHYL+ KEFV  T+H +LKY+ + KNI+KMHARW++++Q+F F+IKH + K NRVADALSR+ +LL  L+ E+  F     L   D D
Subjt:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAF---NHLPTTDED

Query:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR
        F +IW  CT+     DY L EG+LFKGNQLCIP +SLRE LI++ H G L+ H G++KT  ++  RFYWPQ +
Subjt:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR

XP_034219000.1 uncharacterized protein LOC117630375 [Prunus dulcis]4.8e-10049.33Show/hide
Query:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL
        M+QVL  F+  FVVVYFDDILIYS  +++ + HL+ V + L+++KL++NLKKC FCT ++ FLGF++ EN +++D++K++A+  W  PKTV E+++F GL
Subjt:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL

Query:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA----------MEWELVLSFLK-------------E
         +FYR+F+++FSSI AP+T+CLKKG F W E+Q+ SF  IK KL + PVL L  F+  FEV  DA           +   V  F K             +
Subjt:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA----------MEWELVLSFLK-------------E

Query:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAF---NHLPTTDED
        E YA+V+ALKQWEHYL+ KEFV  T+H +LKY+ + KNI+KMHARWV+++Q+F F+IKH + K NRVADALSR+ +LL  L+ E+  F     L   D+D
Subjt:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAF---NHLPTTDED

Query:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR
        F +IW+ CT+     DY L EG+LFKGNQLCIP +SLRE LI++ H G L+ H G++KT   + +RFYWPQ +
Subjt:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR

TrEMBL top hitse value%identityAlignment
A0A5D3DI34 Transposon Ty3-I Gag-Pol polyprotein1.6e-10177.04Show/hide
Query:  MDERKVEAVTKWSIPKTVKEIQAFIGLTSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDAMEWELVLS
        MDERKVEAVTKWSIPKTVKEIQAFIGLTSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDAMEWELVLS
Subjt:  MDERKVEAVTKWSIPKTVKEIQAFIGLTSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDAMEWELVLS

Query:  FLKEELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAFNHLPTTDE
        FLKE                                                          HQASKENRVADALSRKETLLTVLSTEITAFNHLPTTDE
Subjt:  FLKEELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAFNHLPTTDE

Query:  DFGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQ
        DFGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFG+
Subjt:  DFGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQ

A0A5E4FUK3 PREDICTED: reverse mRNAase (Fragment)6.7e-10049.06Show/hide
Query:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL
        M+QVL  F+  FVVVYFDDILIYS  +++ + HL+ V + L+++KL++NLKKC FCT ++ FLGF++ EN +++D+ K++A+  W  PKTV E+++F GL
Subjt:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL

Query:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA---------MEWELVLSFLKE--------------
         +FYR+F+++FSSI AP+T+CLKKG F W E+Q+ SF  IK KL + PVL L  F+  FEV  DA          + +  ++F  E              
Subjt:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA---------MEWELVLSFLKE--------------

Query:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAF---NHLPTTDED
        E YA+V+ALKQWEHYL+ KEFV  T+H +LKY+ + KNI+KMHARWV+++Q+F F+IKH + K NRVADALSR+ +LL  L+ E+  F     L   D+D
Subjt:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAF---NHLPTTDED

Query:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR
        F +IW+ CT+     DY L EG+LFKGNQLCIP +SLRE LI++ H G L+ H G++KT   + +RFYWPQ +
Subjt:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR

M5W531 Reverse transcriptase6.7e-10048.79Show/hide
Query:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL
        M+QVL  F+  FVVVYFDDILIYS  +++ + HL+ V + L+++KL++NLKKC FCT ++ FLGF++ EN +++D+ K++A+  W  PKTV E+++F GL
Subjt:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL

Query:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA---------MEWELVLSFLKE--------------
         +FY +F+++FSSI AP+T+CLKKG F W E+Q+ SF  IK KL + PVL L  F+  FEV  DA         ++ +  ++F  E              
Subjt:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA---------MEWELVLSFLKE--------------

Query:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAF---NHLPTTDED
        E YA+V+ALKQWEHYL+ KEFV  T+H +LKY+ + KNI+KMHARWV+++Q+F F+IKH + K NRVADALSR+ +LL  L+ E+  F     L   D+D
Subjt:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAF---NHLPTTDED

Query:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR
        F +IW+ CT+     DY L EG+LFKGNQLCIP +SLRE LI++ H G L+ H G++KT   + +RFYWPQ +
Subjt:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR

M5WCC7 Reverse transcriptase3.0e-10049.33Show/hide
Query:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL
        M+QVL  F+  FVVVYFDDILIYS  +++ + HL+ V + L+++KLF+NLKKC FCT ++ FLGF++ E+ +++D+ K++A+  W  PKTV E+++F GL
Subjt:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL

Query:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA---------MEWELVLSFLKE--------------
         +FYR+F+++FSSI AP+T+CLKKG F W E+Q+ SF  IK KL + PVL L  F+  FEV  DA          + +  ++F  E              
Subjt:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA---------MEWELVLSFLKE--------------

Query:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAF---NHLPTTDED
        E YA+V+ALKQWEHYL+ KEFV  T+H +LKY+ + KNI+KMHARWV+++Q+F F+IKH + K NRVADALSR+ +LL  L+ E+  F     L   D D
Subjt:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAF---NHLPTTDED

Query:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR
        FG+IW+ CT+     DY L EG+LFKGNQLCIP +SLRE LI++ H G L+ H G++KT   + +RFYWPQ +
Subjt:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR

M5XJ91 Uncharacterized protein8.8e-10049.6Show/hide
Query:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL
        M+QVL  F+  FVVVYFDDILIYS  +++ + HL+ V + L+++KL++NLKKC FCT ++ FLGF++ EN +++D+ K++A+  W  PKTV E+++F GL
Subjt:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL

Query:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA--MEWELVLSFLK---------------------E
         +FYR+F+++FSSI AP+T+CLKKG F W E+Q+ SF  IK KL + PVL L  F+  FEV  DA  +  E VLS  K                     +
Subjt:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDA--MEWELVLSFLK---------------------E

Query:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAF---NHLPTTDED
        E YA+V+ALKQWEHYL+ KEFV  T+H +LKY+ + KNI+KMHARWV+++Q+F F+IKH + K NRVADALSR+ ++L  L+ E+  F     L   D D
Subjt:  ELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAF---NHLPTTDED

Query:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR
        F +IW+ CT+     DY L EG+LFKGNQLCIP +SLRE LI++ H G L+ H G++KT   + +RFYWPQ +
Subjt:  FGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.69.5e-4337.06Show/hide
Query:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL
        M+ +L   LNK  +VY DDI+++S +  + +Q L LVFE L K+ L + L KC F  +E +FLG +++ + +K +  K+EA+ K+ IP   KEI+AF+GL
Subjt:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL

Query:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQH--SFNSIKRKLASQPVLKLSEFDSPFEVAVDAM-----------------------EWELVLSFL
        T +YRKFI NF+ I  PMT CLKK         ++  +F  +K  ++  P+LK+ +F   F +  DA                        E E+  S +
Subjt:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQH--SFNSIKRKLASQPVLKLSEFDSPFEVAVDAM-----------------------EWELVLSFL

Query:  KEELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTE
        ++EL A+V A K + HYLL + F   ++H  L +L   K+ N    RW   +  FDF IK+   KEN VADALSR +   T LS +
Subjt:  KEELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTE

P0CT34 Transposon Tf2-1 polyprotein3.0e-3630.49Show/hide
Query:  VVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGLTSFYRKFIKNFS
        VV Y DDILI+SK+E + ++H+K V + L+ + L IN  KC F   ++ F+G+ ISE      +  ++ V +W  PK  KE++ F+G  ++ RKFI   S
Subjt:  VVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGLTSFYRKFIKNFS

Query:  SITAPMTDCLKKGT-FFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPF-------EVAVDAM---------------------EWELVLSFLKEELYALV
         +T P+ + LKK   + W   Q  +  +IK+ L S PVL+  +F           +VAV A+                     + +L  S   +E+ A++
Subjt:  SITAPMTDCLKKGT-FFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPF-------EVAVDAM---------------------EWELVLSFLKEELYALV

Query:  KALKQWEHYLLS--KEFVPLTNHFSL--KYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSR--KETLLTVLSTE---ITAFNHLPTTDED
        K+LK W HYL S  + F  LT+H +L  +     +  NK  ARW  ++Q F+F I ++    N +ADALSR   ET      +E   I   N +  TD+ 
Subjt:  KALKQWEHYLLS--KEFVPLTNHFSL--KYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSR--KETLLTVLSTE---ITAFNHLPTTDED

Query:  FGKIWSHCT------------DHIHDRDYHLVEGFLFKG-NQLCIPH-TSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR
          ++ +  T            D   + +  L +G L    +Q+ +P+ T L   +IK+ H      H G E    I+ +RF W   R
Subjt:  FGKIWSHCT------------DHIHDRDYHLVEGFLFKG-NQLCIPH-TSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR

P0CT35 Transposon Tf2-2 polyprotein3.0e-3630.49Show/hide
Query:  VVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGLTSFYRKFIKNFS
        VV Y DDILI+SK+E + ++H+K V + L+ + L IN  KC F   ++ F+G+ ISE      +  ++ V +W  PK  KE++ F+G  ++ RKFI   S
Subjt:  VVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGLTSFYRKFIKNFS

Query:  SITAPMTDCLKKGT-FFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPF-------EVAVDAM---------------------EWELVLSFLKEELYALV
         +T P+ + LKK   + W   Q  +  +IK+ L S PVL+  +F           +VAV A+                     + +L  S   +E+ A++
Subjt:  SITAPMTDCLKKGT-FFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPF-------EVAVDAM---------------------EWELVLSFLKEELYALV

Query:  KALKQWEHYLLS--KEFVPLTNHFSL--KYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSR--KETLLTVLSTE---ITAFNHLPTTDED
        K+LK W HYL S  + F  LT+H +L  +     +  NK  ARW  ++Q F+F I ++    N +ADALSR   ET      +E   I   N +  TD+ 
Subjt:  KALKQWEHYLLS--KEFVPLTNHFSL--KYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSR--KETLLTVLSTE---ITAFNHLPTTDED

Query:  FGKIWSHCT------------DHIHDRDYHLVEGFLFKG-NQLCIPH-TSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR
          ++ +  T            D   + +  L +G L    +Q+ +P+ T L   +IK+ H      H G E    I+ +RF W   R
Subjt:  FGKIWSHCT------------DHIHDRDYHLVEGFLFKG-NQLCIPH-TSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR

P0CT41 Transposon Tf2-12 polyprotein3.0e-3630.49Show/hide
Query:  VVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGLTSFYRKFIKNFS
        VV Y DDILI+SK+E + ++H+K V + L+ + L IN  KC F   ++ F+G+ ISE      +  ++ V +W  PK  KE++ F+G  ++ RKFI   S
Subjt:  VVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGLTSFYRKFIKNFS

Query:  SITAPMTDCLKKGT-FFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPF-------EVAVDAM---------------------EWELVLSFLKEELYALV
         +T P+ + LKK   + W   Q  +  +IK+ L S PVL+  +F           +VAV A+                     + +L  S   +E+ A++
Subjt:  SITAPMTDCLKKGT-FFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPF-------EVAVDAM---------------------EWELVLSFLKEELYALV

Query:  KALKQWEHYLLS--KEFVPLTNHFSL--KYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSR--KETLLTVLSTE---ITAFNHLPTTDED
        K+LK W HYL S  + F  LT+H +L  +     +  NK  ARW  ++Q F+F I ++    N +ADALSR   ET      +E   I   N +  TD+ 
Subjt:  KALKQWEHYLLS--KEFVPLTNHFSL--KYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSR--KETLLTVLSTE---ITAFNHLPTTDED

Query:  FGKIWSHCT------------DHIHDRDYHLVEGFLFKG-NQLCIPH-TSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR
          ++ +  T            D   + +  L +G L    +Q+ +P+ T L   +IK+ H      H G E    I+ +RF W   R
Subjt:  FGKIWSHCT------------DHIHDRDYHLVEGFLFKG-NQLCIPH-TSLREALIKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR

P20825 Retrovirus-related Pol polyprotein from transposon 2978.3e-3935.27Show/hide
Query:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL
        M+ +L   LNK  +VY DDI+I+S +  + +  ++LVF  L  + L + L KC F  +E +FLG I++ + +K +  KV+A+  + IP   KEI+AF+GL
Subjt:  MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGL

Query:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQH--SFNSIKRKLASQPVLKLSEFDSPFEVAVDAM-----------------------EWELVLSFL
        T +YRKFI N++ I  PMT CLKK T    +K ++  +F  +K  +   P+L+L +F+  F +  DA                        + EL  S +
Subjt:  TSFYRKFIKNFSSITAPMTDCLKKGTFFWEEKQQH--SFNSIKRKLASQPVLKLSEFDSPFEVAVDAM-----------------------EWELVLSFL

Query:  KEELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSR
        ++EL A+V A K + HYLL ++F+  ++H  L++L   K       RW   +  + F I +   KEN VADALSR
Subjt:  KEELYALVKALKQWEHYLLSKEFVPLTNHFSLKYLQAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein5.6e-2235.17Show/hide
Query:  MQHLKLVFEALQKSKLFINLKKCIFCTEEISFLG--FIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGLTSFYRKFIKNFSSITAPMTDCLKKGTFF
        M HL +V +  ++ + + N KKC F   +I++LG   IIS   V  D  K+EA+  W  PK   E++ F+GLT +YR+F+KN+  I  P+T+ LKK +  
Subjt:  MQHLKLVFEALQKSKLFINLKKCIFCTEEISFLG--FIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGLTSFYRKFIKNFSSITAPMTDCLKKGTFF

Query:  WEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDAMEWELVLS
        W E    +F ++K  + + PVL L +   PF   V    W   ++
Subjt:  WEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDAMEWELVLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCAAGTGTTACATTTATTCTTAAACAAATTTGTGGTAGTCTACTTTGATGATATCTTAATCTATAGCAAGAATGAACAAGATCAAATGCAGCACCTGAAG
CTAGTTTTTGAAGCCCTTCAAAAGAGTAAGTTGTTCATTAATTTGAAGAAATGTATTTTTTGCACGGAAGAAATATCTTTCCTAGGCTTTATTATATCTGAAAAT
CAAGTGAAGATGGACGAAAGAAAGGTGGAAGCTGTAACTAAATGGTCGATTCCTAAAACAGTAAAAGAGATTCAAGCTTTTATAGGGCTGACATCTTTTTACAGG
AAGTTTATTAAGAACTTCAGCTCTATAACAGCTCCTATGACTGATTGTTTGAAGAAGGGAACCTTTTTTTGGGAAGAAAAACAGCAGCACAGTTTTAACTCCATC
AAAAGAAAGCTTGCCAGCCAACCAGTCCTCAAATTATCGGAGTTTGACAGCCCTTTTGAAGTGGCAGTAGATGCAATGGAGTGGGAATTGGTGCTGTCCTTTCTG
AAGGAGGAACTTTATGCACTTGTTAAGGCCTTAAAACAGTGGGAGCACTACTTATTATCTAAGGAATTTGTGCCACTCACTAATCATTTCTCCTTAAAGTATCTC
CAAGCCCCAAAAAACATTAACAAGATGCATGCTAGATGGGTATCTTACATCCAAAGATTTGATTTCTTAATCAAGCATCAAGCAAGCAAAGAAAACAGAGTTGCA
GATGCCTTAAGCAGAAAAGAGACTCTCCTAACTGTGCTTTCAACTGAAATTACAGCCTTTAATCATCTTCCAACGACTGATGAAGACTTTGGTAAGATTTGGAGT
CATTGTACTGATCATATCCATGATAGAGATTATCATTTGGTGGAAGGTTTTCTCTTCAAAGGAAACCAACTATGCATTCCCCATACTTCCTTAAGGGAAGCCCTC
ATAAAGGAAGCTCATTCGGGAGACCTAGCTAGACACTTTGGTCAAGAAAAGACTTTTCAGATTGTCACTAAGAGATTTTATTGGCCTCAAGCCAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCACCAAGTGTTACATTTATTCTTAAACAAATTTGTGGTAGTCTACTTTGATGATATCTTAATCTATAGCAAGAATGAACAAGATCAAATGCAGCACCTGAAG
CTAGTTTTTGAAGCCCTTCAAAAGAGTAAGTTGTTCATTAATTTGAAGAAATGTATTTTTTGCACGGAAGAAATATCTTTCCTAGGCTTTATTATATCTGAAAAT
CAAGTGAAGATGGACGAAAGAAAGGTGGAAGCTGTAACTAAATGGTCGATTCCTAAAACAGTAAAAGAGATTCAAGCTTTTATAGGGCTGACATCTTTTTACAGG
AAGTTTATTAAGAACTTCAGCTCTATAACAGCTCCTATGACTGATTGTTTGAAGAAGGGAACCTTTTTTTGGGAAGAAAAACAGCAGCACAGTTTTAACTCCATC
AAAAGAAAGCTTGCCAGCCAACCAGTCCTCAAATTATCGGAGTTTGACAGCCCTTTTGAAGTGGCAGTAGATGCAATGGAGTGGGAATTGGTGCTGTCCTTTCTG
AAGGAGGAACTTTATGCACTTGTTAAGGCCTTAAAACAGTGGGAGCACTACTTATTATCTAAGGAATTTGTGCCACTCACTAATCATTTCTCCTTAAAGTATCTC
CAAGCCCCAAAAAACATTAACAAGATGCATGCTAGATGGGTATCTTACATCCAAAGATTTGATTTCTTAATCAAGCATCAAGCAAGCAAAGAAAACAGAGTTGCA
GATGCCTTAAGCAGAAAAGAGACTCTCCTAACTGTGCTTTCAACTGAAATTACAGCCTTTAATCATCTTCCAACGACTGATGAAGACTTTGGTAAGATTTGGAGT
CATTGTACTGATCATATCCATGATAGAGATTATCATTTGGTGGAAGGTTTTCTCTTCAAAGGAAACCAACTATGCATTCCCCATACTTCCTTAAGGGAAGCCCTC
ATAAAGGAAGCTCATTCGGGAGACCTAGCTAGACACTTTGGTCAAGAAAAGACTTTTCAGATTGTCACTAAGAGATTTTATTGGCCTCAAGCCAGATGA
Protein sequenceShow/hide protein sequence
MHQVLHLFLNKFVVVYFDDILIYSKNEQDQMQHLKLVFEALQKSKLFINLKKCIFCTEEISFLGFIISENQVKMDERKVEAVTKWSIPKTVKEIQAFIGLTSFYR
KFIKNFSSITAPMTDCLKKGTFFWEEKQQHSFNSIKRKLASQPVLKLSEFDSPFEVAVDAMEWELVLSFLKEELYALVKALKQWEHYLLSKEFVPLTNHFSLKYL
QAPKNINKMHARWVSYIQRFDFLIKHQASKENRVADALSRKETLLTVLSTEITAFNHLPTTDEDFGKIWSHCTDHIHDRDYHLVEGFLFKGNQLCIPHTSLREAL
IKEAHSGDLARHFGQEKTFQIVTKRFYWPQAR