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Cmc01g0017701 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0017701
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr01:15586361..15586660
RNA-Seq ExpressionCmc01g0017701
SyntenyCmc01g0017701
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025998.1 pol protein [Cucumis melo var. makuwa]1.3e-4291.92Show/hide
Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILIYSKTE EH+EHLHQVLETLRANKLYA+FSKCEFWL+KVTFL HVVSSEGVSVDPAKIEAVT+
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS

KAA0033187.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-4292.93Show/hide
Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS
        MSFGLTNAP VFMDLMNRVFKDFLDTFVIVFIDDILIYSKTE E++EHLH+VLETLRANKLYA+FSKCEFWLKKVTFL HVVSSEGVSVDPAKIEAVTS
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS

KAA0046571.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-4291.92Show/hide
Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILIYSKTE EH+EHLHQVLETLRANKLYA+FSKCEFWL+KVTFL HVVSSEGVSVDPAKIEAVT+
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS

KAA0063098.1 pol protein [Cucumis melo var. makuwa]1.3e-4291.92Show/hide
Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILIYSKTE EH+EHLHQVLETLRANKLYA+FSKCEFWL+KVTFL HVVSSEGVSVDPAKIEAVT+
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS

TYK20443.1 pol protein [Cucumis melo var. makuwa]1.3e-4291.92Show/hide
Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILIYSKTE EH+EHLHQVLETLRANKLYA+FSKCEFWL+KVTFL HVVSSEGVSVDPAKIEAVT+
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS

TrEMBL top hitse value%identityAlignment
A0A5A7SV35 Ty3-gypsy retrotransposon protein6.3e-4392.93Show/hide
Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS
        MSFGLTNAP VFMDLMNRVFKDFLDTFVIVFIDDILIYSKTE E++EHLH+VLETLRANKLYA+FSKCEFWLKKVTFL HVVSSEGVSVDPAKIEAVTS
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS

A0A5A7UE01 Reverse transcriptase6.3e-4391.92Show/hide
Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILIYSKTE EH+EHLHQVLETLRANKLYA+FSKCEFWL+KVTFL HVVSSEGVSVDPAKIEAVT+
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS

A0A5A7UIB4 Pol protein6.3e-4391.92Show/hide
Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILIYSKTE EH+EHLHQVLETLRANKLYA+FSKCEFWL+KVTFL HVVSSEGVSVDPAKIEAVT+
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS

A0A5A7V6R2 Reverse transcriptase6.3e-4391.92Show/hide
Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILIYSKTE EH+EHLHQVLETLRANKLYA+FSKCEFWL+KVTFL HVVSSEGVSVDPAKIEAVT+
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS

A0A5A7VBY3 Reverse transcriptase6.3e-4391.92Show/hide
Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS
        MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILIYSKTE EH+EHLHQVLETLRANKLYA+FSKCEFWL+KVTFL HVVSSEGVSVDPAKIEAVT+
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.9e-1339.18Show/hide
Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAV
        M FGL NAP  F   MN + +  L+   +V++DDI+++S +  EH + L  V E L    L  +  KCEF  ++ TFL HV++ +G+  +P KIEA+
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAV

P0CT41 Transposon Tf2-12 polyprotein3.3e-0932.99Show/hide
Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAV
        M +G++ AP  F   +N +  +  ++ V+ ++DDILI+SK+E EH +H+  VL+ L+   L    +KCEF   +V F+ + +S +G +     I+ V
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAV

P20825 Retrovirus-related Pol polyprotein from transposon 2976.5e-1336.36Show/hide
Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS
        M FGL NAP  F   MN + +  L+   +V++DDI+I+S +  EH   +  V   L    L  +  KCEF  K+  FL H+V+ +G+  +P K++A+ S
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS

Q89703 Putative enzymatic polyprotein5.2e-1036.08Show/hide
Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAV
        + FG  N+P +F   M+R+F+ + D F+IV+IDDIL++SKT  EHK H+ +  +   AN L     K E   +K+ FL   +   G+ + P  I  +
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAV

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.5e-0930.61Show/hide
Query:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVT
        + FGL NAP +F  +++ + ++ +     V+IDDI+++S+    H ++L  VL +L    L     K  F   +V FL ++V+++G+  DP K+ A++
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVT

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein3.0e-0542.31Show/hide
Query:  HLHQVLETLRANKLYARFSKCEFWLKKVTFLS--HVVSSEGVSVDPAKIEAV
        HL  VL+    ++ YA   KC F   ++ +L   H++S EGVS DPAK+EA+
Subjt:  HLHQVLETLRANKLYARFSKCEFWLKKVTFLS--HVVSSEGVSVDPAKIEAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTTGGTTTGACTAATGCTCCTGTGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTGACGACATT
TTGATTTACTCCAAGACTGAGGTTGAGCATAAGGAGCATTTGCACCAGGTTTTGGAGACTCTTCGAGCCAATAAGTTGTATGCCAGGTTCTCCAAGTGTGAGTTC
TGGCTGAAGAAGGTGACTTTCCTCAGCCACGTGGTTTCCAGTGAGGGAGTTTCTGTGGACCCAGCAAAGATCGAAGCGGTTACCAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTTGGTTTGACTAATGCTCCTGTGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTGACGACATT
TTGATTTACTCCAAGACTGAGGTTGAGCATAAGGAGCATTTGCACCAGGTTTTGGAGACTCTTCGAGCCAATAAGTTGTATGCCAGGTTCTCCAAGTGTGAGTTC
TGGCTGAAGAAGGTGACTTTCCTCAGCCACGTGGTTTCCAGTGAGGGAGTTTCTGTGGACCCAGCAAAGATCGAAGCGGTTACCAGCTGA
Protein sequenceShow/hide protein sequence
MSFGLTNAPVVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEVEHKEHLHQVLETLRANKLYARFSKCEFWLKKVTFLSHVVSSEGVSVDPAKIEAVTS