; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0017721 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0017721
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr01:15606282..15607382
RNA-Seq ExpressionCmc01g0017721
SyntenyCmc01g0017721
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008194 - UDP-glycosyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025113.1 pol protein [Cucumis melo var. makuwa]4.7e-20796.99Show/hide
Query:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA
        MRQRRWLK VKDYDCEILYH GKANVVAD LSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA
Subjt:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA

Query:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK
        G+GEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEA+SFPFT+HP STKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAP+QRPTGLLQPLSVPGWK
Subjt:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK

Query:  WESVSMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDS
        WES+SMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDS
Subjt:  WESVSMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDS

Query:  QTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG
        QTERL+QIL+DMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG
Subjt:  QTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG

KAA0040942.1 pol protein [Cucumis melo var. makuwa]2.4e-18286.1Show/hide
Query:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA
        MRQRRWL+ VKDYDCEILYH GKANVVADALSRKVAHS ALITKQ PLLRDFERAEIAVSVG+VT+QL QLSVQPTLRQ+II  QLNDPYL EK  + E 
Subjt:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA

Query:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK
        GQGEDFSISSD GL FEGRLCVPEDSAVKTELL+EAHS PFTMHP STKMYQ LR VYWWR MKREVA+FVSRCLVCQQVKAP+Q P GLLQPLSVPGWK
Subjt:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK

Query:  WESVSMDFITGLFRT-QNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD
        WESVSMDFITGL +T + +TVIWVVVDRLTKSAHFV GKSTYTASKWGQLYMTEI RLHGVPVSI+S++DARFTSKFWKGL LAL TRLDFSTAF+ QTD
Subjt:  WESVSMDFITGLFRT-QNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD

Query:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG
         QTERL+QILEDMLR+CVLEFSGSWDS+LHLM+FAYNNSYQATIGMAPFEALYG+CCRSPVCWGE+G
Subjt:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG

KAA0041490.1 hypothetical protein E6C27_scaffold6G00780 [Cucumis melo var. makuwa]8.1e-18386.92Show/hide
Query:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA
        MR RRWL+ VKDYDCEILYH GKANVVADALSRKVAHS ALITKQAPLLRDFERAEIAVSVG+VTSQL QLSVQPTLRQRIIV QLNDPYLVEK  L E 
Subjt:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA

Query:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK
        GQGEDFSIS D GL FEGRLCVPEDSAVKTELL+EAHS PFTMHP STKMYQ LR VYWWRNMKREVA+FVSRCLVCQQVKAP+QRP GLLQPLSVPGWK
Subjt:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK

Query:  WESVSMDFITGLFRT-QNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD
        WESVSMDFITGL +T + YTVIWVVVDRLTKSAHFV GKSTYTASKWGQLYMTEI RLHGVPVSI+S++D RFTSKFWKGL LAL TRLDFSTAF+ QTD
Subjt:  WESVSMDFITGLFRT-QNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD

Query:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG
         +T+RL+QILEDMLR+CVLEFSGSWDS+LHLM+FAYNNSYQATIGMA FEALYG+CCRSPVCWGE+G
Subjt:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG

KAA0045309.1 pol protein [Cucumis melo var. makuwa]5.3e-18285.83Show/hide
Query:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA
        MRQRRWL+ VKDYDCEILYH GKANVVAD+LSRKVAHS ALITKQ PLLRDFERAEIAVSVG+VT+QL QLSVQPTLRQ+II  QLNDPYL EK  + E 
Subjt:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA

Query:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK
        GQGEDFSISSD GL FEGRLCVPEDSAVKTELL+EAHS PFTMHP STKMYQ LR VYWWR MKREVA+FVSRCLVCQQVKAP+Q P GLLQPLSVPGWK
Subjt:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK

Query:  WESVSMDFITGLFRT-QNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD
        WESVSMDFITGL +T + YTVIWVVVDRLTKSAHFV GKSTYTASKWGQLY+TEI RLHGVPVSI+S++DARFTSKFWKGL LAL TRLDFSTAF+ QTD
Subjt:  WESVSMDFITGLFRT-QNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD

Query:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG
         QTERL+QILEDMLR+CVLEFSGSWDS+LHLM+FAYNNSYQATIGMAPFEALYG+CCRSPVCWGE+G
Subjt:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG

KAA0063098.1 pol protein [Cucumis melo var. makuwa]2.6e-18185.83Show/hide
Query:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA
        MRQRRWL+ VKDYDCEILYH GKANVVADALSRKVAHS ALITKQ PLLRDFERAEI VSVG+VT+QL QLSVQPTLRQ+II  QLNDPYL EK  + E 
Subjt:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA

Query:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK
        GQGEDFSISSD GL FEGRLCVPEDSAVKTELL+EAHS PFTMHP STKMYQ LR VYWWR MKREVA+FVSRCLVCQQVKAP+Q P GLLQPLSVPGWK
Subjt:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK

Query:  WESVSMDFITGLFRTQ-NYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD
        WESVSMDFITGL +TQ  YTVIWVVVDRLTKSAHFV GKSTYTASKWGQLYMTEI RLHGVPVSI+S++DARFTSKFWKGL LAL TRLDFSTAF+ QTD
Subjt:  WESVSMDFITGLFRTQ-NYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD

Query:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG
         QTERL+QILEDMLR+CVLEFS SWDS+LHLM+FAYNNSYQATI MAPFEALYG+CCRSPVCWGE+G
Subjt:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG

TrEMBL top hitse value%identityAlignment
A0A5A7SKB9 Pol protein2.3e-20796.99Show/hide
Query:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA
        MRQRRWLK VKDYDCEILYH GKANVVAD LSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA
Subjt:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA

Query:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK
        G+GEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEA+SFPFT+HP STKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAP+QRPTGLLQPLSVPGWK
Subjt:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK

Query:  WESVSMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDS
        WES+SMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDS
Subjt:  WESVSMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDS

Query:  QTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG
        QTERL+QIL+DMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG
Subjt:  QTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG

A0A5A7TBV4 Pol protein1.1e-18286.1Show/hide
Query:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA
        MRQRRWL+ VKDYDCEILYH GKANVVADALSRKVAHS ALITKQ PLLRDFERAEIAVSVG+VT+QL QLSVQPTLRQ+II  QLNDPYL EK  + E 
Subjt:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA

Query:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK
        GQGEDFSISSD GL FEGRLCVPEDSAVKTELL+EAHS PFTMHP STKMYQ LR VYWWR MKREVA+FVSRCLVCQQVKAP+Q P GLLQPLSVPGWK
Subjt:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK

Query:  WESVSMDFITGLFRT-QNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD
        WESVSMDFITGL +T + +TVIWVVVDRLTKSAHFV GKSTYTASKWGQLYMTEI RLHGVPVSI+S++DARFTSKFWKGL LAL TRLDFSTAF+ QTD
Subjt:  WESVSMDFITGLFRT-QNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD

Query:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG
         QTERL+QILEDMLR+CVLEFSGSWDS+LHLM+FAYNNSYQATIGMAPFEALYG+CCRSPVCWGE+G
Subjt:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG

A0A5A7TDX1 Reverse transcriptase3.9e-18386.92Show/hide
Query:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA
        MR RRWL+ VKDYDCEILYH GKANVVADALSRKVAHS ALITKQAPLLRDFERAEIAVSVG+VTSQL QLSVQPTLRQRIIV QLNDPYLVEK  L E 
Subjt:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA

Query:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK
        GQGEDFSIS D GL FEGRLCVPEDSAVKTELL+EAHS PFTMHP STKMYQ LR VYWWRNMKREVA+FVSRCLVCQQVKAP+QRP GLLQPLSVPGWK
Subjt:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK

Query:  WESVSMDFITGLFRT-QNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD
        WESVSMDFITGL +T + YTVIWVVVDRLTKSAHFV GKSTYTASKWGQLYMTEI RLHGVPVSI+S++D RFTSKFWKGL LAL TRLDFSTAF+ QTD
Subjt:  WESVSMDFITGLFRT-QNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD

Query:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG
         +T+RL+QILEDMLR+CVLEFSGSWDS+LHLM+FAYNNSYQATIGMA FEALYG+CCRSPVCWGE+G
Subjt:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG

A0A5A7TVN9 Reverse transcriptase2.5e-18285.83Show/hide
Query:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA
        MRQRRWL+ VKDYDCEILYH GKANVVAD+LSRKVAHS ALITKQ PLLRDFERAEIAVSVG+VT+QL QLSVQPTLRQ+II  QLNDPYL EK  + E 
Subjt:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA

Query:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK
        GQGEDFSISSD GL FEGRLCVPEDSAVKTELL+EAHS PFTMHP STKMYQ LR VYWWR MKREVA+FVSRCLVCQQVKAP+Q P GLLQPLSVPGWK
Subjt:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK

Query:  WESVSMDFITGLFRT-QNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD
        WESVSMDFITGL +T + YTVIWVVVDRLTKSAHFV GKSTYTASKWGQLY+TEI RLHGVPVSI+S++DARFTSKFWKGL LAL TRLDFSTAF+ QTD
Subjt:  WESVSMDFITGLFRT-QNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD

Query:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG
         QTERL+QILEDMLR+CVLEFSGSWDS+LHLM+FAYNNSYQATIGMAPFEALYG+CCRSPVCWGE+G
Subjt:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG

A0A5A7V646 Reverse transcriptase1.3e-18185.83Show/hide
Query:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA
        MRQRRWL+ VKDYDCEILYH GKANVVADALSRKVAHS ALITKQ PLLRDFERAEI VSVG+VT+QL QLSVQPTLRQ+II  QLNDPYL EK  + E 
Subjt:  MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEA

Query:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK
        GQGEDFSISSD GL FEGRLCVPEDSAVKTELL+EAHS PFTMHP STKMYQ LR VYWWR MKREVA+FVSRCLVCQQVKAP+Q P GLLQPLSVPGWK
Subjt:  GQGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWK

Query:  WESVSMDFITGLFRTQ-NYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD
        WESVSMDFITGL +TQ  YTVIWVVVDRLTKSAHFV GKSTYTASKWGQLYMTEI RLHGVPVSI+S++DARFTSKFWKGL LAL TRLDFSTAF+ QTD
Subjt:  WESVSMDFITGLFRTQ-NYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTD

Query:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG
         QTERL+QILEDMLR+CVLEFS SWDS+LHLM+FAYNNSYQATI MAPFEALYG+CCRSPVCWGE+G
Subjt:  SQTERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.0e-3927.07Show/hide
Query:  RQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEAG
        R  RW  F++D++ EI Y  G AN +ADALSR       ++ +  P+ +D E   I        + + Q+S+    + +++    ND  L+      +  
Subjt:  RQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEAG

Query:  QGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWKW
          E+  +     +  + ++ +P D+ +   ++ + H     +HP    +   +   + W+ +++++  +V  C  CQ  K+   +P G LQP+      W
Subjt:  QGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWKW

Query:  ESVSMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDSQ
        ES+SMDFIT L  +  Y  ++VVVDR +K A  V    + TA +  +++   +    G P  I+++ D  FTS+ WK      +  + FS  +  QTD Q
Subjt:  ESVSMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDSQ

Query:  TERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALY
        TER +Q +E +LR        +W  ++ L++ +YNN+  +   M PFE ++
Subjt:  TERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALY

P0CT35 Transposon Tf2-2 polyprotein1.0e-3927.07Show/hide
Query:  RQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEAG
        R  RW  F++D++ EI Y  G AN +ADALSR       ++ +  P+ +D E   I        + + Q+S+    + +++    ND  L+      +  
Subjt:  RQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEAG

Query:  QGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWKW
          E+  +     +  + ++ +P D+ +   ++ + H     +HP    +   +   + W+ +++++  +V  C  CQ  K+   +P G LQP+      W
Subjt:  QGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWKW

Query:  ESVSMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDSQ
        ES+SMDFIT L  +  Y  ++VVVDR +K A  V    + TA +  +++   +    G P  I+++ D  FTS+ WK      +  + FS  +  QTD Q
Subjt:  ESVSMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDSQ

Query:  TERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALY
        TER +Q +E +LR        +W  ++ L++ +YNN+  +   M PFE ++
Subjt:  TERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALY

P0CT36 Transposon Tf2-3 polyprotein1.0e-3927.07Show/hide
Query:  RQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEAG
        R  RW  F++D++ EI Y  G AN +ADALSR       ++ +  P+ +D E   I        + + Q+S+    + +++    ND  L+      +  
Subjt:  RQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEAG

Query:  QGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWKW
          E+  +     +  + ++ +P D+ +   ++ + H     +HP    +   +   + W+ +++++  +V  C  CQ  K+   +P G LQP+      W
Subjt:  QGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWKW

Query:  ESVSMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDSQ
        ES+SMDFIT L  +  Y  ++VVVDR +K A  V    + TA +  +++   +    G P  I+++ D  FTS+ WK      +  + FS  +  QTD Q
Subjt:  ESVSMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDSQ

Query:  TERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALY
        TER +Q +E +LR        +W  ++ L++ +YNN+  +   M PFE ++
Subjt:  TERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALY

P0CT41 Transposon Tf2-12 polyprotein1.0e-3927.07Show/hide
Query:  RQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEAG
        R  RW  F++D++ EI Y  G AN +ADALSR       ++ +  P+ +D E   I        + + Q+S+    + +++    ND  L+      +  
Subjt:  RQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEAG

Query:  QGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWKW
          E+  +     +  + ++ +P D+ +   ++ + H     +HP    +   +   + W+ +++++  +V  C  CQ  K+   +P G LQP+      W
Subjt:  QGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWKW

Query:  ESVSMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDSQ
        ES+SMDFIT L  +  Y  ++VVVDR +K A  V    + TA +  +++   +    G P  I+++ D  FTS+ WK      +  + FS  +  QTD Q
Subjt:  ESVSMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDSQ

Query:  TERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALY
        TER +Q +E +LR        +W  ++ L++ +YNN+  +   M PFE ++
Subjt:  TERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALY

Q9UR07 Transposon Tf2-11 polyprotein1.0e-3927.07Show/hide
Query:  RQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEAG
        R  RW  F++D++ EI Y  G AN +ADALSR       ++ +  P+ +D E   I        + + Q+S+    + +++    ND  L+      +  
Subjt:  RQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEAG

Query:  QGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWKW
          E+  +     +  + ++ +P D+ +   ++ + H     +HP    +   +   + W+ +++++  +V  C  CQ  K+   +P G LQP+      W
Subjt:  QGEDFSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWKW

Query:  ESVSMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDSQ
        ES+SMDFIT L  +  Y  ++VVVDR +K A  V    + TA +  +++   +    G P  I+++ D  FTS+ WK      +  + FS  +  QTD Q
Subjt:  ESVSMDFITGLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDSQ

Query:  TERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALY
        TER +Q +E +LR        +W  ++ L++ +YNN+  +   M PFE ++
Subjt:  TERLDQILEDMLRSCVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACAGAGAAGATGGCTTAAGTTTGTGAAGGATTACGACTGCGAGATTCTGTATCACCTGGGAAAGGCAAATGTAGTAGCTGATGCACTGAGTAGGAAGGTT
GCCCATTCAACAGCGCTTATCACCAAGCAAGCTCCCTTACTCAGAGATTTCGAGAGAGCTGAGATTGCAGTCTCAGTAGGGAAAGTTACCTCACAGTTGACTCAA
TTGTCGGTGCAGCCGACCTTGAGACAGAGGATCATTGTTACTCAGCTAAATGATCCTTATTTGGTCGAGAAATGTCTATTAGCAGAGGCAGGGCAAGGTGAGGAT
TTCTCCATATCCTCTGACTATGGCCTTACGTTTGAGGGACGTCTGTGCGTGCCCGAAGATAGTGCAGTCAAGACAGAGCTTTTGTCTGAGGCTCACAGTTTTCCA
TTTACTATGCACCCTAGAAGTACGAAGATGTACCAAGGTTTGAGGTGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAAACTTTGTCAGTAGATGTTTG
GTGTGCCAGCAGGTGAAGGCACCTAAACAGAGGCCAACAGGGTTGTTGCAACCCTTAAGTGTGCCAGGATGGAAATGGGAGAGCGTGTCGATGGACTTCATTACA
GGACTGTTCAGGACTCAGAACTATACAGTCATTTGGGTTGTTGTTGACAGACTCACGAAGTCAGCCCACTTTGTTCTAGGGAAATCCACTTACACTGCCAGTAAG
TGGGGACAGTTATATATGACCGAGATAGCGAGACTGCATGGAGTACCTGTATCTATCGTTTCTAACAAAGATGCTCGTTTCACATCGAAGTTCTGGAAAGGACTT
CATCTTGCATTGAGCACGAGGTTAGACTTCAGCACAGCTTTTTATCTCCAGACTGATAGCCAAACAGAAAGGTTGGACCAGATTTTAGAGGACATGCTGCGATCT
TGTGTGCTAGAGTTTTCAGGGAGTTGGGACTCCTATTTACATTTGATGAAGTTCGCCTATAATAACAGTTACCAGGCCACCATTGGTATGGCACCGTTTGAAGCT
CTATATGGTAGGTGTTGCAGATCCCCTGTTTGTTGGGGGGAGATAGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGACAGAGAAGATGGCTTAAGTTTGTGAAGGATTACGACTGCGAGATTCTGTATCACCTGGGAAAGGCAAATGTAGTAGCTGATGCACTGAGTAGGAAGGTT
GCCCATTCAACAGCGCTTATCACCAAGCAAGCTCCCTTACTCAGAGATTTCGAGAGAGCTGAGATTGCAGTCTCAGTAGGGAAAGTTACCTCACAGTTGACTCAA
TTGTCGGTGCAGCCGACCTTGAGACAGAGGATCATTGTTACTCAGCTAAATGATCCTTATTTGGTCGAGAAATGTCTATTAGCAGAGGCAGGGCAAGGTGAGGAT
TTCTCCATATCCTCTGACTATGGCCTTACGTTTGAGGGACGTCTGTGCGTGCCCGAAGATAGTGCAGTCAAGACAGAGCTTTTGTCTGAGGCTCACAGTTTTCCA
TTTACTATGCACCCTAGAAGTACGAAGATGTACCAAGGTTTGAGGTGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAAACTTTGTCAGTAGATGTTTG
GTGTGCCAGCAGGTGAAGGCACCTAAACAGAGGCCAACAGGGTTGTTGCAACCCTTAAGTGTGCCAGGATGGAAATGGGAGAGCGTGTCGATGGACTTCATTACA
GGACTGTTCAGGACTCAGAACTATACAGTCATTTGGGTTGTTGTTGACAGACTCACGAAGTCAGCCCACTTTGTTCTAGGGAAATCCACTTACACTGCCAGTAAG
TGGGGACAGTTATATATGACCGAGATAGCGAGACTGCATGGAGTACCTGTATCTATCGTTTCTAACAAAGATGCTCGTTTCACATCGAAGTTCTGGAAAGGACTT
CATCTTGCATTGAGCACGAGGTTAGACTTCAGCACAGCTTTTTATCTCCAGACTGATAGCCAAACAGAAAGGTTGGACCAGATTTTAGAGGACATGCTGCGATCT
TGTGTGCTAGAGTTTTCAGGGAGTTGGGACTCCTATTTACATTTGATGAAGTTCGCCTATAATAACAGTTACCAGGCCACCATTGGTATGGCACCGTTTGAAGCT
CTATATGGTAGGTGTTGCAGATCCCCTGTTTGTTGGGGGGAGATAGGCTAA
Protein sequenceShow/hide protein sequence
MRQRRWLKFVKDYDCEILYHLGKANVVADALSRKVAHSTALITKQAPLLRDFERAEIAVSVGKVTSQLTQLSVQPTLRQRIIVTQLNDPYLVEKCLLAEAGQGED
FSISSDYGLTFEGRLCVPEDSAVKTELLSEAHSFPFTMHPRSTKMYQGLRCVYWWRNMKREVANFVSRCLVCQQVKAPKQRPTGLLQPLSVPGWKWESVSMDFIT
GLFRTQNYTVIWVVVDRLTKSAHFVLGKSTYTASKWGQLYMTEIARLHGVPVSIVSNKDARFTSKFWKGLHLALSTRLDFSTAFYLQTDSQTERLDQILEDMLRS
CVLEFSGSWDSYLHLMKFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEIG