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Cmc01g0017761 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0017761
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr01:15656205..15656531
RNA-Seq ExpressionCmc01g0017761
SyntenyCmc01g0017761
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0010073 - meristem maintenance (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0018108 - peptidyl-tyrosine phosphorylation (biological process)
GO:0007018 - microtubule-based movement (biological process)
GO:0006508 - proteolysis (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0019752 - carboxylic acid metabolic process (biological process)
GO:0045489 - pectin biosynthetic process (biological process)
GO:0048544 - recognition of pollen (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0030170 - pyridoxal phosphate binding (molecular function)
GO:0016830 - carbon-carbon lyase activity (molecular function)
GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0008017 - microtubule binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
GO:0004714 - transmembrane receptor protein tyrosine kinase activity (molecular function)
GO:0004518 - nuclease activity (molecular function)
GO:0003777 - microtubule motor activity (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025120.1 Gag-Pol [Cucumis melo var. makuwa]1.6e-41100Show/hide
Query:  MSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFIVRGYVDSD
        MSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFIVRGYVDSD
Subjt:  MSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFIVRGYVDSD

KAE8657786.1 Alpha/beta-Hydrolases superfamily protein isoform 1 [Hibiscus syriacus]9.5e-3975Show/hide
Query:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFI
        MQDC  ISTP P+NFK+SS MSPS+E +RMEMSRVPYA  VGSLMFAMICTR DIA AV VVSRYM + G+EHW+IVKRILRYIK + NVALCYGG+N +
Subjt:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFI

Query:  VRGYVDSD
        + GYVDSD
Subjt:  VRGYVDSD

KAE8686521.1 Protein STRUBBELIG-RECEPTOR FAMILY 1 [Hibiscus syriacus]1.2e-3874.07Show/hide
Query:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFI
        MQDC  ISTP P+NFK+SS MSPSNE +RMEMSRVPYA  VGSLMFAMICTR DIA AV VVSRYM + G+EHW+ VKRI+RYIK + NVALCYGG+N +
Subjt:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFI

Query:  VRGYVDSD
        + GYVDSD
Subjt:  VRGYVDSD

KAE8725329.1 hypothetical protein F3Y22_tig00008957pilonHSYRG00078 [Hibiscus syriacus]4.3e-3975Show/hide
Query:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFI
        MQDC LISTP P+NFK+SS MSPS+E +RM+MSRVPYA  VGSLMFAMICTR DIA AV VVSRYMT+ G+EHW+ VKRILRYIK + NVALCYGG+N +
Subjt:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFI

Query:  VRGYVDSD
        + GYVDSD
Subjt:  VRGYVDSD

TYK19363.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]1.7e-43100Show/hide
Query:  ISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFIVRGYVDSD
        ISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFIVRGYVDSD
Subjt:  ISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFIVRGYVDSD

TrEMBL top hitse value%identityAlignment
A0A2N9FMI2 Integrase catalytic domain-containing protein2.7e-3975Show/hide
Query:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFI
        MQDC  I TP P+NFK+SS MSPSNEA+RMEMSRVPYA  VGSLMFAM+CTR DIA AV VVSRYM + G+EHW+ VKRILRY+K + NVALCYGG++F 
Subjt:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFI

Query:  VRGYVDSD
        VRGYVDSD
Subjt:  VRGYVDSD

A0A2N9GY85 Glutaredoxin-dependent peroxiredoxin2.7e-3975Show/hide
Query:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFI
        MQDC  I TP P+NFK+SS MSPSNEA+RMEMSRVPYA  VGSLMFAM+CTR DIA AV VVSRYM + G+EHW+ VKRILRY+K + NVALCYGG++F 
Subjt:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFI

Query:  VRGYVDSD
        VRGYVDSD
Subjt:  VRGYVDSD

A0A5A7SG59 Gag-Pol7.6e-42100Show/hide
Query:  MSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFIVRGYVDSD
        MSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFIVRGYVDSD
Subjt:  MSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFIVRGYVDSD

A0A5D3D783 Retrotransposon protein, putative, Ty1-copia subclass8.1e-44100Show/hide
Query:  ISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFIVRGYVDSD
        ISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFIVRGYVDSD
Subjt:  ISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFIVRGYVDSD

A0A6A3CDW5 Uncharacterized protein2.1e-3975Show/hide
Query:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFI
        MQDC LISTP P+NFK+SS MSPS+E +RM+MSRVPYA  VGSLMFAMICTR DIA AV VVSRYMT+ G+EHW+ VKRILRYIK + NVALCYGG+N +
Subjt:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFI

Query:  VRGYVDSD
        + GYVDSD
Subjt:  VRGYVDSD

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.3e-1137.5Show/hide
Query:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCY----GG
        M++C  +STP P   KI+ ++  S+E         P    +G LM+ M+CTR D+  AV ++SRY + +  E W  +KR+LRY+K +I++ L +      
Subjt:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCY----GG

Query:  TNFIVRGYVDSD
         N I+ GYVDSD
Subjt:  TNFIVRGYVDSD

P0CV72 Secreted RxLR effector protein 1616.9e-0839.24Show/hide
Query:  MSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCY--GGTNFIVRGYVDSD
        M  VPY   VG++M+ M+ TR D+A AV V+S++ +     HW  +KR+LRY++ +    L +   GT  +V GY D+D
Subjt:  MSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCY--GGTNFIVRGYVDSD

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-2548.15Show/hide
Query:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFI
        M++   +STP   + K+S KM P+   ++  M++VPY+  VGSLM+AM+CTR DIAHAV VVSR++ + G+EHW+ VK ILRY++ +    LC+GG++ I
Subjt:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFI

Query:  VRGYVDSD
        ++GY D+D
Subjt:  VRGYVDSD

P92519 Uncharacterized mitochondrial protein AtMg008106.4e-0632.11Show/hide
Query:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVAL-CYGGTNF
        M DC  +STP P+  K++S +S +   D  +   +     VG+L + +  TR DI++AV +V + M       +D++KR+LRY+K +I   L  +  +  
Subjt:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVAL-CYGGTNF

Query:  IVRGYVDSD
         V+ + DSD
Subjt:  IVRGYVDSD

Arabidopsis top hitse value%identityAlignment
ATMG00810.1 DNA/RNA polymerases superfamily protein4.6e-0732.11Show/hide
Query:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVAL-CYGGTNF
        M DC  +STP P+  K++S +S +   D  +   +     VG+L + +  TR DI++AV +V + M       +D++KR+LRY+K +I   L  +  +  
Subjt:  MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVAL-CYGGTNF

Query:  IVRGYVDSD
         V+ + DSD
Subjt:  IVRGYVDSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGATTGTACGCTAATTTCTACCCCTTTTCCTGTTAATTTTAAGATATCCTCCAAAATGAGCCCTAGCAATGAAGCAGATAGGATGGAGATGTCTCGAGTA
CCGTATGCATTGACAGTGGGAAGTTTAATGTTTGCCATGATATGTACCAGAATAGACATTGCACATGCAGTGGAAGTAGTTAGTCGGTATATGACGAGTTCTGGT
CGAGAGCATTGGGATATTGTTAAAAGGATTCTTAGATACATCAAAGAATCCATAAATGTTGCATTGTGTTATGGAGGAACAAACTTTATTGTCAGAGGATATGTT
GACTCCGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGATTGTACGCTAATTTCTACCCCTTTTCCTGTTAATTTTAAGATATCCTCCAAAATGAGCCCTAGCAATGAAGCAGATAGGATGGAGATGTCTCGAGTA
CCGTATGCATTGACAGTGGGAAGTTTAATGTTTGCCATGATATGTACCAGAATAGACATTGCACATGCAGTGGAAGTAGTTAGTCGGTATATGACGAGTTCTGGT
CGAGAGCATTGGGATATTGTTAAAAGGATTCTTAGATACATCAAAGAATCCATAAATGTTGCATTGTGTTATGGAGGAACAAACTTTATTGTCAGAGGATATGTT
GACTCCGATTAG
Protein sequenceShow/hide protein sequence
MQDCTLISTPFPVNFKISSKMSPSNEADRMEMSRVPYALTVGSLMFAMICTRIDIAHAVEVVSRYMTSSGREHWDIVKRILRYIKESINVALCYGGTNFIVRGYV
DSD