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Cmc01g0018311 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0018311
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description40S ribosomal protein S25-2
Genome locationCMiso1.1chr01:16120400..16121872
RNA-Seq ExpressionCmc01g0018311
SyntenyCmc01g0018311
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACU15598.1 unknown [Glycine max]4.9e-0951.47Show/hide
Query:  LRELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRHG
        LREL T+ +D+R  GP+ A +  L     +H LDDL+EH+VL +EP+ L  A+EELRSVGS + +RHG
Subjt:  LRELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRHG

GER42321.1 chaperone protein ClpB [Striga asiatica]2.8e-0441.54Show/hide
Query:  ELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRH
        +LA + + +R RGP+  R   L  F+ +     L EH+VL +EP+ L  A+EELR+VG R  +RH
Subjt:  ELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRH

KAE8669673.1 40S ribosomal protein S25-2 [Hibiscus syriacus]4.3e-0549.12Show/hide
Query:  NRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRH
        N    PS A    LDG  H+H  + L++H+VLPI+P+SL  ANEELR+  SRS + H
Subjt:  NRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRH

QBM89948.1 hypothetical protein METSCH_E01850 [Metschnikowia aff. pulcherrima]7.3e-0543.08Show/hide
Query:  ELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRH
        ELA + ++NR R  +  R H LD F ++HTL DLTE+NV  ++P +    +E+LR VG  +S+ H
Subjt:  ELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRH

TKY59822.1 hypothetical protein E2542_SST16916 [Spatholobus suberectus]1.7e-0637.14Show/hide
Query:  KLKTTHANRKLIID------TISPKQTTAME--LASANLRELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSR
        K + TH N  L+ D       +  K+    E    + N REL ++ +D R  G +RA  +  D   HIH L+DL++H++LP++P+ L  A+EELRS GS 
Subjt:  KLKTTHANRKLIID------TISPKQTTAME--LASANLRELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSR

Query:  SSIRH
          I H
Subjt:  SSIRH

TrEMBL top hitse value%identityAlignment
A0A1Y1MFD6 Uncharacterized protein (Fragment)1.2e-0853.03Show/hide
Query:  ELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRHG
        +LA + NDN   G +RA  H LD    +HTLDDLTE +VL IEP   +G NEELRS+G R+ + HG
Subjt:  ELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRHG

A0A2M3YY69 Uncharacterized protein (Fragment)4.2e-0650Show/hide
Query:  ELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRHG
        +L TI + N FR  +R  T   D  Y+IH LD+ TEHNV  I+P SL+  +EELRS+G  S I HG
Subjt:  ELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRHG

A0A2M3ZFA2 Uncharacterized protein (Fragment)5.5e-0648.48Show/hide
Query:  ELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRHG
        +L TI + N FR  +R  T   D  Y+IH LD+ TEHNV  ++P SL+  +EELRS+G  S I HG
Subjt:  ELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRHG

A0A5K1AWF5 Uncharacterized protein (Fragment)9.9e-0845.45Show/hide
Query:  ELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRHG
        +LA + +++  RGP+R R   L     +H+L DL EH+VL ++P+ L GA+EELRSVGS + + HG
Subjt:  ELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRHG

C6T1X6 Uncharacterized protein2.4e-0951.47Show/hide
Query:  LRELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRHG
        LREL T+ +D+R  GP+ A +  L     +H LDDL+EH+VL +EP+ L  A+EELRSVGS + +RHG
Subjt:  LRELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRSSIRHG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCATAATAGCCTAAAAAAGGAGACTCACACAGACCCATATTCGCAGAAGTTAAAAACAACACACGCAAATAGGAAATTGATCATAGATACGATTTCGCCGAAGCA
GACGACGGCGATGGAGCTAGCATCTGCTAATCTAAGAGAGCTGGCCACAATCAGCAATGACAACCGGTTTCGAGGTCCTTCCAGAGCTCGAACCCACTTTCTCGACGGCT
TTTACCACATCCATACCCTCGACGACTTGACCGAACACAACGTGCTTCCCATCGAGCCAATCAGTCTTAGCGGTGCAAATGAAGAACTGAGATCCGTTGGTTCCAGGTCC
AGCATTCGCCATGGATAG
mRNA sequenceShow/hide mRNA sequence
CCTTAGTCCTGTTAAATCATCAGAGAGACTAAGATCCCCAAAATCAGGATCTCAGAAATCATCACAAAAAGAGTATAAACCATAAAATATTCCACTACACCCACCCTACT
TTTCCATGGCATCAAATGCAGACAAAATTACTTTAAACCCCAAGTTTTATTTTCCAAAACAAGCTTCTCTCTTCCCTTCCACCCCCTCTTTTCCGAGAGCAATTACAATA
ATATTATGTAAACAAAGAAATCTCAATAAAGAATCTTATCTTCATTGACTAGATTTAGTGCACTCCCCCAGTGTCAAAACTATAATTCCACTCAATCAGATCAACAGATA
TACTGAACATACAGTTTTGAGGAGATGGGGGTCAACAGTCGGAATTTAGTTAATTAACAATGTAAATCAGATACTCTACAACTCAATCAGATCAAGATCATCATTTCTAA
TTTTTAAGAAATGGATTAATGAAAGTATGATATGAGCAAAAAGGTGAAAAGAGGGGATGAGTTAAAGACAGCCATGTATTATTAATAATCCATTGCAAAACCGCCATTTA
ACAGGGCAGATGCATATTAACTCATGAAGTAGCATAAACCCATGACCCATAATAGCCTAAAAAAGGAGACTCACACAGACCCATATTCGCAGAAGTTAAAAACAACACAC
GCAAATAGGAAATTGATCATAGATACGATTTCGCCGAAGCAGACGACGGCGATGGAGCTAGCATCTGCTAATCTAAGAGAGCTGGCCACAATCAGCAATGACAACCGGTT
TCGAGGTCCTTCCAGAGCTCGAACCCACTTTCTCGACGGCTTTTACCACATCCATACCCTCGACGACTTGACCGAACACAACGTGCTTCCCATCGAGCCAATCAGTCTTA
GCGGTGCAAATGAAGAACTGAGATCCGTTGGTTCCAGGTCCAGCATTCGCCATGGATAGAATACCAGGTCCGGTGTGCTTCTTGATGAAGTTCTCATCGGCGAACTTGGC
TCCGTAGATTGACTCACCTCCAGTACCATTTCCGGCGGTGAAATCGCCTCCCTGGCACATGAAATTAGGGATCACACGGTGGAATGACGATCCTTTGTAATGAAGGGGTT
TGCCGCTTCTGCCGACTCCCTTCTCACCAGTGCAGAGTGCACGAAAGTTCTCGGCGGTGCGAGGAGTGACATCGGCGTAGAGCTCCATCACGATCCGGCCGGCCGGTGCG
CCGCCGATAGACATGTCGAAGAAAACTTTAGGGTTTGGCATTTTTGGATTGTTTCTCTGAGTTCCGAAATCTCTTATCGTAGAAGAAGACCGATATGAATTTAGGGTTGG
GTGGGGCAATCGAGTTATATAGCGGTCAAGCTTCGTATGTATCTATGGAAACTTGATATCTACCGTTAGATCAACGCACGTGGTGTCATCTTAGTCTCATATAGCTAACT
AGGGTTAGGTTAAGAAACTCCCCTTGTTTACCTTGGTTAGTTT
Protein sequenceShow/hide protein sequence
MTHNSLKKETHTDPYSQKLKTTHANRKLIIDTISPKQTTAMELASANLRELATISNDNRFRGPSRARTHFLDGFYHIHTLDDLTEHNVLPIEPISLSGANEELRSVGSRS
SIRHG