CuGenDBv2

Gene ID	Cmc01g0019251
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr01:16917892..16918660
RNA-Seq Expression	Cmc01g0019251
Synteny	Cmc01g0019251
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040409.1 pol protein [Cucumis melo var. makuwa]

1.1e-113

87.55

Show/hide

Query:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR
        +REYPDVFPD+L GLPPPRE+DFAI++EP TAPISRAPYRM P ELKELKVQ QELLDKGFIRPSVSPW A VLFVKKKDGSM LCIDY+ELNKV VKNR
Subjt:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR

Query:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMNKTEAEHEEHLHQVLETLRANKLYAKFSKC
        YPL +IDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK AFRSRYGHYEF+VMSFGLTNA  VFMDLMN+  AEHEEHLHQVLETLRANKLYAKFSKC
Subjt:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMNKTEAEHEEHLHQVLETLRANKLYAKFSKC

Query:  EFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP
        EFWL+KV+FLGHVVSSEGVS+DPAKIEAVT+WP
Subjt:  EFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP

KAA0060745.1 pol protein [Cucumis melo var. makuwa]

1.5e-113

81.96

Show/hide

Query:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR
        +REYPDVFPDEL GLPPPRE+DFAI++EP TAPISRAPYRM P ELKELKVQ QELLDKGFIRPSVSPW A VLFVKKKDGSM LCIDY+ELNKV VKNR
Subjt:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR

Query:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE
        YPL KIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK AFRSRYGHYEF+VMSFGLTNA  VFMDLMN                      KTEAEHE
Subjt:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE

Query:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP
        EHLHQVLETLRANKLYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIEAVT+WP
Subjt:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP

KAA0065652.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.3e-113

81.18

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Query:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR
        +REYPDVFPD+LLGLPPPRE+DFAI++EP TAPISRAPYRM P ELKELKVQ QELLDKGFIRPSVSPW A VLFVKKKDGSM LCIDY+ELNKV VKNR
Subjt:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR

Query:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE
        YPL +IDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK AFRSRYGHYEF+VMSFGLTNA  VFMDLMN                      KTEAEHE
Subjt:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE

Query:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP
        EHLHQVLETLRANKLYAKFSKCEFWL+KV+FLGHVVS EGVS+DPAKIEAVT+WP
Subjt:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP

KAA0066264.1 pol protein [Cucumis melo var. makuwa]

3.3e-113

81.57

Show/hide

Query:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR
        +REYPDVFPDEL GLPPPRE+DFAI++EP TAPISRAPYRM P ELKELKVQ QELLDKGFIRPSVSPW A VLFVKKKDGSM LCIDY+ELNKV VKNR
Subjt:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR

Query:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE
        YPL +IDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK AFRSRYGHYEF+VMSFGLTNA  VFMDLMN                      KTEAEHE
Subjt:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE

Query:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP
        EHLHQVLETLRANKLYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIEAVT+WP
Subjt:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP

TYK01306.1 pol protein [Cucumis melo var. makuwa]

4.3e-113

81.96

Show/hide

Query:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR
        +REYPDVFPDEL GLPPPRE+DFAI++EP TAPISRAPYRM P ELKELKVQ QELLDKGFIRPSVSPW A VLFVKKKDGSM LCIDY+ELNKV VKNR
Subjt:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR

Query:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE
        YPL +IDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK AFR RYGHYEFIVMSFGLTNA  VFMDLMN                      KTEAEHE
Subjt:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE

Query:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP
        EHLHQVLETLRANKLYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIEAVT+WP
Subjt:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TGL7 Pol protein

5.5e-114

87.55

Show/hide

Query:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR
        +REYPDVFPD+L GLPPPRE+DFAI++EP TAPISRAPYRM P ELKELKVQ QELLDKGFIRPSVSPW A VLFVKKKDGSM LCIDY+ELNKV VKNR
Subjt:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR

Query:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMNKTEAEHEEHLHQVLETLRANKLYAKFSKC
        YPL +IDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK AFRSRYGHYEF+VMSFGLTNA  VFMDLMN+  AEHEEHLHQVLETLRANKLYAKFSKC
Subjt:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMNKTEAEHEEHLHQVLETLRANKLYAKFSKC

Query:  EFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP
        EFWL+KV+FLGHVVSSEGVS+DPAKIEAVT+WP
Subjt:  EFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP

A0A5A7V4E4 Reverse transcriptase

7.2e-114

81.96

Show/hide

Query:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR
        +REYPDVFPDEL GLPPPRE+DFAI++EP TAPISRAPYRM P ELKELKVQ QELLDKGFIRPSVSPW A VLFVKKKDGSM LCIDY+ELNKV VKNR
Subjt:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR

Query:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE
        YPL KIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK AFRSRYGHYEF+VMSFGLTNA  VFMDLMN                      KTEAEHE
Subjt:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE

Query:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP
        EHLHQVLETLRANKLYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIEAVT+WP
Subjt:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP

A0A5A7VBI7 Reverse transcriptase

2.1e-113

81.18

Show/hide

Query:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR
        +REYPDVFPD+LLGLPPPRE+DFAI++EP TAPISRAPYRM P ELKELKVQ QELLDKGFIRPSVSPW A VLFVKKKDGSM LCIDY+ELNKV VKNR
Subjt:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR

Query:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE
        YPL +IDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK AFRSRYGHYEF+VMSFGLTNA  VFMDLMN                      KTEAEHE
Subjt:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE

Query:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP
        EHLHQVLETLRANKLYAKFSKCEFWL+KV+FLGHVVS EGVS+DPAKIEAVT+WP
Subjt:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP

A0A5A7VG30 Reverse transcriptase

1.6e-113

81.57

Show/hide

Query:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR
        +REYPDVFPDEL GLPPPRE+DFAI++EP TAPISRAPYRM P ELKELKVQ QELLDKGFIRPSVSPW A VLFVKKKDGSM LCIDY+ELNKV VKNR
Subjt:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR

Query:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE
        YPL +IDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK AFRSRYGHYEF+VMSFGLTNA  VFMDLMN                      KTEAEHE
Subjt:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE

Query:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP
        EHLHQVLETLRANKLYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIEAVT+WP
Subjt:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP

A0A5D3BSV9 Reverse transcriptase

2.1e-113

81.96

Show/hide

Query:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR
        +REYPDVFPDEL GLPPPRE+DFAI++EP TAPISRAPYRM P ELKELKVQ QELLDKGFIRPSVSPW A VLFVKKKDGSM LCIDY+ELNKV VKNR
Subjt:  MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNR

Query:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE
        YPL +IDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK AFR RYGHYEFIVMSFGLTNA  VFMDLMN                      KTEAEHE
Subjt:  YPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMN----------------------KTEAEHE

Query:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP
        EHLHQVLETLRANKLYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIEAVT+WP
Subjt:  EHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

8.6e-32

32.37

Show/hide

Query:  LPPP-REIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNRYPLLKIDDLFDQL
        LP P + ++F +++      +    Y + P +++ +  +  + L  G IR S +     V+FV KK+G++ + +DYK LNK +  N YPL  I+ L  ++
Subjt:  LPPP-REIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNRYPLLKIDDLFDQL

Query:  QGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNA------------------HVV-FMD---LMNKTEAEHEEHLHQVLETLRAN
        QG+T+F+K+DL+S YH +R+R  D  K+AFR   G +E++VM +G++ A                  HVV +MD   + +K+E+EH +H+  VL+ L+  
Subjt:  QGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNA------------------HVV-FMD---LMNKTEAEHEEHLHQVLETLRAN

Query:  KLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSW
         L    +KCEF   +V F+G+ +S +G +     I+ V  W
Subjt:  KLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSW

P0CT35 Transposon Tf2-2 polyprotein

8.6e-32

32.37

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Query:  LPPP-REIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNRYPLLKIDDLFDQL
        LP P + ++F +++      +    Y + P +++ +  +  + L  G IR S +     V+FV KK+G++ + +DYK LNK +  N YPL  I+ L  ++
Subjt:  LPPP-REIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNRYPLLKIDDLFDQL

Query:  QGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNA------------------HVV-FMD---LMNKTEAEHEEHLHQVLETLRAN
        QG+T+F+K+DL+S YH +R+R  D  K+AFR   G +E++VM +G++ A                  HVV +MD   + +K+E+EH +H+  VL+ L+  
Subjt:  QGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNA------------------HVV-FMD---LMNKTEAEHEEHLHQVLETLRAN

Query:  KLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSW
         L    +KCEF   +V F+G+ +S +G +     I+ V  W
Subjt:  KLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSW

P0CT41 Transposon Tf2-12 polyprotein

8.6e-32

32.37

Show/hide

Query:  LPPP-REIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNRYPLLKIDDLFDQL
        LP P + ++F +++      +    Y + P +++ +  +  + L  G IR S +     V+FV KK+G++ + +DYK LNK +  N YPL  I+ L  ++
Subjt:  LPPP-REIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNRYPLLKIDDLFDQL

Query:  QGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNA------------------HVV-FMD---LMNKTEAEHEEHLHQVLETLRAN
        QG+T+F+K+DL+S YH +R+R  D  K+AFR   G +E++VM +G++ A                  HVV +MD   + +K+E+EH +H+  VL+ L+  
Subjt:  QGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNA------------------HVV-FMD---LMNKTEAEHEEHLHQVLETLRAN

Query:  KLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSW
         L    +KCEF   +V F+G+ +S +G +     I+ V  W
Subjt:  KLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSW

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

3.0e-32

32.43

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Query:  REYPDVFPDELLGLPPPREIDF-------AIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNK
        ++Y ++  ++L    PPR  D         I+++P        PY +T    +E+    Q+LLD  FI PS SP  + V+ V KKDG+  LC+DY+ LNK
Subjt:  REYPDVFPDELLGLPPPREIDF-------AIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNK

Query:  VIVKNRYPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLM--------------------NKTE
          + + +PL +ID+L  ++  A +F+ +DL SGYHQ+ +   D  K AF +  G YE+ VM FGL NA   F   M                    +++ 
Subjt:  VIVKNRYPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLM--------------------NKTE

Query:  AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP
         EH +HL  VLE L+   L  K  KC+F  ++  FLG+ +  + ++    K  A+  +P
Subjt:  AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP

Q99315 Transposon Ty3-G Gag-Pol polyprotein

3.0e-32

32.43

Show/hide

Query:  REYPDVFPDELLGLPPPREIDF-------AIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNK
        ++Y ++  ++L    PPR  D         I+++P        PY +T    +E+    Q+LLD  FI PS SP  + V+ V KKDG+  LC+DY+ LNK
Subjt:  REYPDVFPDELLGLPPPREIDF-------AIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNK

Query:  VIVKNRYPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLM--------------------NKTE
          + + +PL +ID+L  ++  A +F+ +DL SGYHQ+ +   D  K AF +  G YE+ VM FGL NA   F   M                    +++ 
Subjt:  VIVKNRYPLLKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLM--------------------NKTE

Query:  AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP
         EH +HL  VLE L+   L  K  KC+F  ++  FLG+ +  + ++    K  A+  +P
Subjt:  AEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDPAKIEAVTSWP

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

6.8e-08

44.64

Show/hide

Query:  HLHQVLETLRANKLYAKFSKCEFWLKKVSFLG--HVVSSEGVSIDPAKIEAVTSWP
        HL  VL+    ++ YA   KC F   ++++LG  H++S EGVS DPAK+EA+  WP
Subjt:  HLHQVLETLRANKLYAKFSKCEFWLKKVSFLG--HVVSSEGVSIDPAKIEAVTSWP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGAGAGTACCCCGACGTCTTTCCAGATGAGCTTCTAGGACTTCCTCCTCCTAGAGAGATTGACTTCGCTATTAAGGTGGAGCCAAACACTGCTCCTATATCTAGAGC
TCCTTATAGAATGACCCCGACCGAGCTGAAAGAACTGAAGGTCCAGTTTCAGGAGTTACTGGACAAGGGCTTCATACGACCTAGCGTGTCACCTTGGGAAGCGCTTGTAC
TGTTCGTAAAGAAAAAGGATGGATCAATGCATCTTTGCATTGATTACAAAGAGCTAAATAAGGTGATAGTCAAGAATCGCTATCCTTTGCTCAAGATTGACGATTTGTTT
GATCAGCTGCAAGGAGCCACTGTTTTCTCTAAGATCGATTTACGTTCAGGCTATCACCAGCTGAGGATTAGAGACAGTGACATCCCTAAGATTGCTTTTCGTTCTAGATA
TGGACATTACGAGTTCATTGTAATGTCTTTTGGCCTAACAAATGCTCATGTTGTATTTATGGATCTGATGAACAAGACAGAGGCTGAGCATGAGGAGCATTTGCATCAGG
TTTTGGAGACTCTTCGAGCCAATAAGCTATATGCCAAGTTTTCTAAGTGTGAGTTCTGGCTGAAAAAGGTGTCCTTTCTTGGCCATGTGGTATCCAGTGAGGGAGTTTCT
ATTGACCCAGCAAAGATTGAAGCTGTTACTAGTTGGCCTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MREYPDVFPDELLGLPPPREIDFAIKVEPNTAPISRAPYRMTPTELKELKVQFQELLDKGFIRPSVSPWEALVLFVKKKDGSMHLCIDYKELNKVIVKNRYPLLKIDDLF
DQLQGATVFSKIDLRSGYHQLRIRDSDIPKIAFRSRYGHYEFIVMSFGLTNAHVVFMDLMNKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVSFLGHVVSSEGVS
IDPAKIEAVTSWP

Cmc01g0019251 (gene) of Melon (Charmono) v1.1 genome