; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0019741 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0019741
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr01:17624208..17625116
RNA-Seq ExpressionCmc01g0019741
SyntenyCmc01g0019741
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RZB46718.1 Transposon Ty3-G Gag-Pol polyprotein [Glycine soja]1.9e-12167.22Show/hide
Query:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS
        +TV++N+KGE++P R+QN WR+CIDYR+LN+VTK DHFPLPF+DQM+E L G+S++CFLDGFS + QI IA E+Q+KTTFTC +  +A+RRMPFGLCNA 
Subjt:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS

Query:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV
        GTFQRC++SIF DF+E CIEVFMDDFTVYG SFD CL SLE +LNRCIETNLVLN+EKCHFMV  G VLGH++S KGIE+D  KI VI +L YP+C+++V
Subjt:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV

Query:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN
        RSFLG  GFYRRFI+DFSK+AL   NLLQK+V F  +D CK+AFD LK+ L +TPI+Q+ +W  PF++MCDASN ALG VL Q IDK    IYYASRTL+
Subjt:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN

Query:  QA
         A
Subjt:  QA

RZC25552.1 Transposon Ty3-G Gag-Pol polyprotein [Glycine soja]4.3e-12166.89Show/hide
Query:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS
        +TV++N+K E++P R+QN WR+CIDYR+LN+VTK DHFPLPF+DQM+ERL G+S++CFLDGFS + QI IA E+Q+KTTFTC +  +A+RRMPFGLCNA 
Subjt:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS

Query:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV
        GTFQRC++SIF DF+E CIEVFMDDFTVYG SFD CL SLE +LNRCIETNLVLN+EKCHFMV  G VLGH++S KGIE+D  KI VI +L YP+C+++V
Subjt:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV

Query:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN
        RSFLG  GFYRRFI+DFSK+AL  +NLLQK+V F  +D CK+AFD LK+ L +TPI+Q+ +W  PF++MCDASN ALG VL Q IDK    IYYASR L+
Subjt:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN

Query:  QA
         A
Subjt:  QA

XP_019153451.1 PREDICTED: uncharacterized protein LOC109149915 [Ipomoea nil]1.5e-12168.21Show/hide
Query:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS
        +TVV+N K E+VPMR+QNGWRMCID+RKLN  T+ DHFPLPF+DQM+ERL G+S FCFLDGFS +YQI IA E+Q+KTTFTC +  +AFRRMPFGLCNA 
Subjt:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS

Query:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV
        GTFQRC+MSIF +FIE CIEVFMDDFTVYGDSF+ CL +L  +L RCI+ NLVLNYEKCHFMVS G VLGH++  KGIE+DK K+D+I  L YPT +++V
Subjt:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV

Query:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN
        RSFLG  GFYRRFIKDFS+IA+L + LLQKDV F     C++AFD LK  L S P++Q  NW LPF+IMCDASN A+G VL Q + K+ H IYYASRTLN
Subjt:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN

Query:  QA
         A
Subjt:  QA

XP_019158165.1 PREDICTED: uncharacterized protein LOC109154882 [Ipomoea nil]5.6e-12167.88Show/hide
Query:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS
        +TVV+N   E+VP R+QNGWR+CIDYRKLN VT+ DHFPLPF+DQM+ERL GRSYFCFLDG+S ++QIPIA E+Q+KTTFTC +  +A+RRMPFGLCNA 
Subjt:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS

Query:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV
        GTFQRC++SIF D++   IEVFMDDFTVYGDSFD+CL +L LIL RCIE+NLVLN EKCHFMV+ G VLGH++S  GIE+DK K+D+I+ L YPT +++V
Subjt:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV

Query:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN
        RSFLG  GFYRRFIKDFSKIAL    LLQK+  F  D  CK AFD+LK+ L S PI+Q  NWN PF+IMCDAS+ A+G VL Q I K  H IYYASRTLN
Subjt:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN

Query:  QA
         A
Subjt:  QA

XP_021603241.1 uncharacterized protein LOC110608326 [Manihot esculenta]6.6e-12267.88Show/hide
Query:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS
        +TV  N +GE VP R+QNGWR+CIDYRKLN VT+ DHFPLPF+DQM+ERL G+S+FC LDGFS FYQIP+A E+Q+KTTFTC +  +A+RRMPFGLCNA 
Subjt:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS

Query:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV
         TFQRC++SIF +F+EK IEVFMDDFTVYG+SFD CL +L  IL RC+E+NLVLNYEKCHFMV  G +LGH VS +GIE+DK K+DVI+ L YPTC++D+
Subjt:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV

Query:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN
        RSFLG  GFYRRFIKDFS+IA     LLQKDVPF  D+ C++AF+ LK++LV+ PI+Q+ NW+ PF+IMCDASN ALG VL Q IDKK H I YASRTL+
Subjt:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN

Query:  QA
        +A
Subjt:  QA

TrEMBL top hitse value%identityAlignment
A0A0L9TXH6 Reverse transcriptase7.8e-12165.89Show/hide
Query:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS
        +TV+KN+K E++P R+QN WR+CIDYR+LN+ T+ DHFPLPF+DQM+ERL G+S++CFLDGFS ++QI I+ E+Q+KTTFTC +  +A+RRMPFGLCNA 
Subjt:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS

Query:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV
        GTFQRC++SIF DF+E CIEVFMDDFTVYG SFD CL SL+ +L RCI+TNLVLN+EKCHFMV  G VLGH++S KGIE+D  KI VI +L YP+C+++V
Subjt:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV

Query:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN
        RSFLG  GFYRRFIKDFSK  L  + LLQKD+ F  DD CK+AFD LKQ L++TPI+Q+ +W  PF++MCDASN ALG VL Q IDK    IYYASRTL+
Subjt:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN

Query:  QA
         A
Subjt:  QA

A0A445EY74 Reverse transcriptase2.7e-12166.89Show/hide
Query:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS
        +TV++N+K E++P R+QN WR+CIDYR+LN+VTK DHFPLPF+DQM+ERL G+S++CFLDGFS + QI IA E+Q+KTTFTC +  +A+RRMPFGLCNA 
Subjt:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS

Query:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV
        GTFQRC++SIF DF+E CIEVFMDDFTVYG SFD CL SLE +LNRCIETNLVLN+EKCHFMV  G VLGH++S KGIE+D  KI VI +L YP+C+++V
Subjt:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV

Query:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN
        RSFLG  GFYRRFI+DFSK+AL  +NLLQK+V F  +D CK+AFD LK+ L +TPI+Q+ +W  PF++MCDASN ALG VL Q IDK    IYYA RTL+
Subjt:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN

Query:  QA
         A
Subjt:  QA

A0A445FCZ8 Reverse transcriptase9.3e-12267.22Show/hide
Query:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS
        +TV++N+KGE++P R+QN WR+CIDYR+LN+VTK DHFPLPF+DQM+E L G+S++CFLDGFS + QI IA E+Q+KTTFTC +  +A+RRMPFGLCNA 
Subjt:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS

Query:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV
        GTFQRC++SIF DF+E CIEVFMDDFTVYG SFD CL SLE +LNRCIETNLVLN+EKCHFMV  G VLGH++S KGIE+D  KI VI +L YP+C+++V
Subjt:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV

Query:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN
        RSFLG  GFYRRFI+DFSK+AL   NLLQK+V F  +D CK+AFD LK+ L +TPI+Q+ +W  PF++MCDASN ALG VL Q IDK    IYYASRTL+
Subjt:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN

Query:  QA
         A
Subjt:  QA

A0A445LR48 Transposon Ty3-G Gag-Pol polyprotein2.1e-12166.89Show/hide
Query:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS
        +TV++N+K E++P R+QN WR+CIDYR+LN+VTK DHFPLPF+DQM+ERL G+S++CFLDGFS + QI IA E+Q+KTTFTC +  +A+RRMPFGLCNA 
Subjt:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS

Query:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV
        GTFQRC++SIF DF+E CIEVFMDDFTVYG SFD CL SLE +LNRCIETNLVLN+EKCHFMV  G VLGH++S KGIE+D  KI VI +L YP+C+++V
Subjt:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV

Query:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN
        RSFLG  GFYRRFI+DFSK+AL  +NLLQK+V F  +D CK+AFD LK+ L +TPI+Q+ +W  PF++MCDASN ALG VL Q IDK    IYYASR L+
Subjt:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN

Query:  QA
         A
Subjt:  QA

A0A6P8DCT8 Reverse transcriptase4.6e-12166.23Show/hide
Query:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS
        +T+VKN++GE+VP R+QNGWR+CIDYRKLN  T+ DHFPLPF+DQM+ERL G+SYFCFLDG+S +YQI +A E+Q+KTTFTC +  +A+RRMPFGLC+A 
Subjt:  MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNAS

Query:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV
        GTFQRC+MSIF D IE CIEVFMDDFTVYGDSFD CLA+L  +L+RCIE+NLVLNYEKCHFMV+HG VLGH++S +GIE+DK K+D+I  L YP+ ++ +
Subjt:  GTFQRCVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDV

Query:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN
        RSFLG  GFYRRFIKDFSKIA    +LLQKD  F+   NC++AFD LK+ L S PI+Q  +W LPF+IM DAS+ A+G VL Q +DK+ H IYYAS+TL+
Subjt:  RSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN

Query:  QA
         A
Subjt:  QA

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.2e-4938.52Show/hide
Query:  WRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNASGTFQRCVMSIFFDFIEKCI
        +R+ IDYRKLN++T  D  P+P +D+++ +L   +YF  +D    F+QI +  E   KT F+  +  Y + RMPFGL NA  TFQRC+  I    + K  
Subjt:  WRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNASGTFQRCVMSIFFDFIEKCI

Query:  EVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDVRSFLGSVGFYRRFIKDFSK
         V++DD  V+  S D  L SL L+  +  + NL L  +KC F+    T LGH+++  GI+ + EKI+ IQK   PT  K++++FLG  G+YR+FI +F+ 
Subjt:  EVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDVRSFLGSVGFYRRFIKDFSK

Query:  IALLQTNLLQKDVPF-LIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLNQ
        IA   T  L+K++     +     AF  LK  +   PIL+  ++   F +  DAS++ALG VL Q      H + Y SRTLN+
Subjt:  IALLQTNLLQKDVPF-LIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLNQ

P10394 Retrovirus-related Pol polyprotein from transposon 4123.0e-4539.22Show/hide
Query:  WRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNASGTFQRCVMSIFFDFIEKC-
        WR+ IDYR++NK    D FPLP +D ++++L    YF  LD  S F+QI +    +  T+F+     Y F R+PFGL  A  +FQR +M+I F  IE   
Subjt:  WRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNASGTFQRCVMSIFFDFIEKC-

Query:  IEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDVRSFLGSVGFYRRFIKDFS
          ++MDD  V G S    L +L  +  +C E NL L+ EKC F +   T LGH  + KGI  D +K DVIQ    P      R F+    +YRRFIK+F+
Subjt:  IEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDVRSFLGSVGFYRRFIKDFS

Query:  KIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLNQ
          +   T L +K+VPF   D C+KAF  LK +L++  +LQ  +++  F I  DAS  A G VL Q  +     + YASR   +
Subjt:  KIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLNQ

P10401 Retrovirus-related Pol polyprotein from transposon gypsy2.1e-3833.79Show/hide
Query:  RMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNASGTFQRCVMSIFFDFIEKCIE
        R+ ID+RKLN+ T  D +P+P +  ++  L    +F  LD  S ++QI +A  +++KT+F+ +   Y F R+PFGL NAS  FQR +  +  + I K   
Subjt:  RMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNASGTFQRCVMSIFFDFIEKCIE

Query:  VFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDVRSFLGSVGFYRRFIKDFSKI
        V++DD  ++ ++    +  ++ +L   I+ N+ ++ EK  F       LG +VS  G + D EK+  IQ+   P C+  VRSFLG   +YR FIKDF+ I
Subjt:  VFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDVRSFLGSVGFYRRFIKDFSKI

Query:  ALLQTNLLQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTP-ILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLNQ
        A   T++L+           K +P   ++  + AF  L+  L S   IL+  ++  PF +  DAS   +G VL Q    +   I   SRTL Q
Subjt:  ALLQTNLLQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTP-ILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLNQ

P20825 Retrovirus-related Pol polyprotein from transposon 2971.1e-4737.63Show/hide
Query:  NGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNASGTFQRCVMSIFFDFIEK
        N +R+ IDYRKLN++T  D +P+P +D+++ +L    YF  +D    F+QI +  E   KT F+     Y + RMPFGL NA  TFQRC+ +I    + K
Subjt:  NGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNASGTFQRCVMSIFFDFIEK

Query:  CIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDVRSFLGSVGFYRRFIKDF
           V++DD  ++  S    L S++L+  +  + NL L  +KC F+      LGH+V+  GI+ +  K+  I     PT  K++R+FLG  G+YR+FI ++
Subjt:  CIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDVRSFLGSVGFYRRFIKDF

Query:  SKIALLQTNLLQKDVPFLIDDNCK----KAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN
        + IA   T+ L+K       D  K    +AF+ LK  ++  PILQ  ++   F +  DASNLALG VL Q      H I + SRTLN
Subjt:  SKIALLQTNLLQKDVPFLIDDNCK----KAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLN

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.2e-4635.49Show/hide
Query:  WRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNASGTFQRCVMSIFFDFIEKCI
        +RM +D+++LN VT  D +P+P ++  +  L    YF  LD  S F+QI +   +  KT F+     Y F R+PFGL NA   FQR +  I  + I K  
Subjt:  WRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNASGTFQRCVMSIFFDFIEKCI

Query:  EVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDVRSFLGSVGFYRRFIKDFSK
         V++DD  V+ + +D    +L L+L    + NL +N EK HF+ +    LG++V+  GI+ D +K+  I ++  PT +K+++ FLG   +YR+FI+D++K
Subjt:  EVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDVRSFLGSVGFYRRFIKDFSK

Query:  IALLQTNLLQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLNQ
        +A   TNL +             VP  +D+   ++F+DLK  L S+ IL    +  PF +  DASN A+G VL Q    +   I Y SR+LN+
Subjt:  IALLQTNLLQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLNQ

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein7.2e-1028.77Show/hide
Query:  LELILNRCIETNLVLNYEKCHFMVSHGTVLG--HLVSLKGIEIDKEKIDVIQKLSYPTCLKDVRSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLID
        L ++L    +     N +KC F       LG  H++S +G+  D  K++ +     P    ++R FLG  G+YRRF+K++ KI    T LL+K+      
Subjt:  LELILNRCIETNLVLNYEKCHFMVSHGTVLG--HLVSLKGIEIDKEKIDVIQKLSYPTCLKDVRSFLGSVGFYRRFIKDFSKIALLQTNLLQKDVPFLID

Query:  DNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQ
        +    AF  LK  + + P+L   +  LPF       N +  +  EQ
Subjt:  DNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGTTGTAAAGAACGACAAAGGTGAGATGGTTCCGATGCGAATGCAAAATGGTTGGAGAATGTGCATAGATTACCGGAAACTCAATAAGGTAACAAAAACG
GATCATTTCCCCTTACCTTTTCTTGATCAAATGATAGAACGCTTAGTGGGTAGATCATATTTTTGTTTTTTAGATGGATTTTCTAGTTTTTACCAAATTCCTATA
GCATGTGAAGAACAAAAGAAAACAACTTTTACTTGTGATTATGAAATTTATGCATTTAGGCGTATGCCATTTGGTCTTTGTAATGCATCAGGCACATTCCAACGT
TGCGTGATGAGCATATTTTTCGACTTTATCGAAAAATGCATTGAAGTTTTCATGGATGATTTCACAGTTTATGGTGATAGTTTTGATGCATGTTTAGCGAGTCTA
GAATTAATTCTAAATAGATGCATAGAAACTAATCTTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTCTCATGGTACAGTTTTAGGACACTTAGTGTCTTTA
AAAGGAATAGAGATAGATAAAGAAAAAATTGACGTTATACAAAAATTGTCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTGGTAGTGTCGGCTTTTAT
AGACGATTTATAAAAGATTTTTCTAAAATTGCTTTGCTTCAAACTAATCTCTTGCAAAAAGATGTACCATTTCTGATTGATGACAATTGTAAGAAGGCATTTGAT
GATCTCAAACAAAGGTTAGTCTCTACCCCTATCCTTCAATCTCTTAATTGGAATTTACCTTTCAAAATAATGTGTGATGCAAGCAACTTAGCATTAGGAGTTGTT
TTAGAACAAATGATAGATAAAAAATTGCATGCTATATACTATGCATCTAGGACCCTTAACCAAGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGACCGTTGTAAAGAACGACAAAGGTGAGATGGTTCCGATGCGAATGCAAAATGGTTGGAGAATGTGCATAGATTACCGGAAACTCAATAAGGTAACAAAAACG
GATCATTTCCCCTTACCTTTTCTTGATCAAATGATAGAACGCTTAGTGGGTAGATCATATTTTTGTTTTTTAGATGGATTTTCTAGTTTTTACCAAATTCCTATA
GCATGTGAAGAACAAAAGAAAACAACTTTTACTTGTGATTATGAAATTTATGCATTTAGGCGTATGCCATTTGGTCTTTGTAATGCATCAGGCACATTCCAACGT
TGCGTGATGAGCATATTTTTCGACTTTATCGAAAAATGCATTGAAGTTTTCATGGATGATTTCACAGTTTATGGTGATAGTTTTGATGCATGTTTAGCGAGTCTA
GAATTAATTCTAAATAGATGCATAGAAACTAATCTTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTCTCATGGTACAGTTTTAGGACACTTAGTGTCTTTA
AAAGGAATAGAGATAGATAAAGAAAAAATTGACGTTATACAAAAATTGTCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTGGTAGTGTCGGCTTTTAT
AGACGATTTATAAAAGATTTTTCTAAAATTGCTTTGCTTCAAACTAATCTCTTGCAAAAAGATGTACCATTTCTGATTGATGACAATTGTAAGAAGGCATTTGAT
GATCTCAAACAAAGGTTAGTCTCTACCCCTATCCTTCAATCTCTTAATTGGAATTTACCTTTCAAAATAATGTGTGATGCAAGCAACTTAGCATTAGGAGTTGTT
TTAGAACAAATGATAGATAAAAAATTGCATGCTATATACTATGCATCTAGGACCCTTAACCAAGCATAA
Protein sequenceShow/hide protein sequence
MTVVKNDKGEMVPMRMQNGWRMCIDYRKLNKVTKTDHFPLPFLDQMIERLVGRSYFCFLDGFSSFYQIPIACEEQKKTTFTCDYEIYAFRRMPFGLCNASGTFQR
CVMSIFFDFIEKCIEVFMDDFTVYGDSFDACLASLELILNRCIETNLVLNYEKCHFMVSHGTVLGHLVSLKGIEIDKEKIDVIQKLSYPTCLKDVRSFLGSVGFY
RRFIKDFSKIALLQTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFKIMCDASNLALGVVLEQMIDKKLHAIYYASRTLNQA