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Cmc01g0019761 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0019761
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionprotein RADIALIS-like 1
Genome locationCMiso1.1chr01:17666146..17666415
RNA-Seq ExpressionCmc01g0019761
SyntenyCmc01g0019761
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036174.1 protein RADIALIS-like 2 [Cucumis melo var. makuwa]4.0e-4398.88Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRGVV
        MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRGV+
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRGVV

XP_008447294.1 PREDICTED: protein RADIALIS-like 2 [Cucumis melo]3.1e-43100Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRGVV
        MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRGVV
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRGVV

XP_011659078.1 protein RADIALIS-like 2 [Cucumis sativus]3.2e-4096.55Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVK HYQLLLHDVKHIESGNVPFPYPTTSS+DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

XP_022952273.1 protein RADIALIS-like 1 [Cucurbita moschata]3.4e-3488.51Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSS GSNAWT MQNK FEKALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY   +S DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

XP_038888638.1 protein RADIALIS-like 1 [Benincasa hispida]8.1e-3691.95Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSSHGSNAWT MQNKTFEKALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLL DVKHIESGNVPFPYP  SS DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

TrEMBL top hitse value%identityAlignment
A0A1S3BHZ4 protein RADIALIS-like 21.5e-43100Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRGVV
        MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRGVV
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRGVV

A0A5D3D8F6 Protein RADIALIS-like 21.9e-4398.88Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRGVV
        MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRGV+
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRGVV

A0A6J1C6U4 protein RADIALIS-like 17.6e-3282.76Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSS GS+AWT MQNK FE+ALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLL+ DVKHIESG+VPFPY  TS+DDD P KRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

A0A6J1GK35 protein RADIALIS-like 11.6e-3488.51Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSS GSNAWT MQNK FEKALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY   +S DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

A0A6J1I517 protein RADIALIS-like 14.8e-3487.36Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSS GSNAWT MQNK FEKALA YDQDTPERW+NVAK VGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY   +S DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.2e-2165.79Show/hide
Query:  ASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTS
        +SMSS  S +WT  QNK FE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+  IE+G+VPFP   TS
Subjt:  ASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTS

Q58FS3 Transcription factor RADIALIS1.6e-1854.02Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSDDDLPRKR
        MAS    G   W+  +NK FE+ALA YD+DTP+RW NVA+AV  +T EEVK+HY++L+ D+K+IESG VPFP Y TT  +     KR
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSDDDLPRKR

Q6NNN0 Protein RADIALIS-like 37.1e-1962.5Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP
        MAS S   S +WT+ +NK FE+ALA YDQDTP+RW NVA+AVG K+ EEV+RHY+LL+ DV  IESG  P P
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP

Q8GW75 Protein RADIALIS-like 53.5e-1861.11Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP
        MAS S   S++WT  QNK FE+ALA YD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D+ +IE   VP P
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP

Q9SIJ5 Protein RADIALIS-like 25.3e-2261.18Show/hide
Query:  SMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSDDDLPRKR
        SMSS+GS +WT  QNK FE+ALA YDQDTP+RW NVA+AVG KT EE KR Y LL+ D++ IE+G+VPFP Y TT+ + +  R R
Subjt:  SMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSDDDLPRKR

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.5e-1961.11Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP
        MAS S   S++WT  QNK FE+ALA YD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D+ +IE   VP P
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP

AT1G75250.1 RAD-like 63.3e-1960Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSD
        MAS S    + WT  QNK FE+ALA YD+DTP+RW NVAKAVG KT EEVKRHY +L+ D+ +IE+G VP P Y T  S+
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSD

AT1G75250.2 RAD-like 63.3e-1960Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSD
        MAS S    + WT  QNK FE+ALA YD+DTP+RW NVAKAVG KT EEVKRHY +L+ D+ +IE+G VP P Y T  S+
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSD

AT2G21650.1 Homeodomain-like superfamily protein3.8e-2361.18Show/hide
Query:  SMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSDDDLPRKR
        SMSS+GS +WT  QNK FE+ALA YDQDTP+RW NVA+AVG KT EE KR Y LL+ D++ IE+G+VPFP Y TT+ + +  R R
Subjt:  SMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSDDDLPRKR

AT4G39250.1 RAD-like 18.4e-2365.79Show/hide
Query:  ASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTS
        +SMSS  S +WT  QNK FE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+  IE+G+VPFP   TS
Subjt:  ASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCCTCACATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACGTTTGAAAAGGCTTTGGCTGAGTATGATCAAGACACTCCTGAAAGATGGGTGAA
TGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATCGAGTCTGGCAATGTCCCTTTTCCCTATC
CAACAACCTCGAGCGATGATGATTTGCCGAGGAAAAGAGGTGTCGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCCTCACATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACGTTTGAAAAGGCTTTGGCTGAGTATGATCAAGACACTCCTGAAAGATGGGTGAA
TGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATCGAGTCTGGCAATGTCCCTTTTCCCTATC
CAACAACCTCGAGCGATGATGATTTGCCGAGGAAAAGAGGTGTCGTTTGA
Protein sequenceShow/hide protein sequence
MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRGVV