; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0019771 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0019771
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr01:17691653..17692429
RNA-Seq ExpressionCmc01g0019771
SyntenyCmc01g0019771
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032541.1 pol protein [Cucumis melo var. makuwa]1.9e-13091.09Show/hide
Query:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK
        MAPAELKE KVQLQELL+KGFIRPSVSPWGA VLFVK+KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DI K
Subjt:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK

Query:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG
         AFRSRYGHY F+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHL+QVLET RANKLYAKFSKCEFWL+KVTFL HVV SEG
Subjt:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG

Query:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV
        VSVDPAKIEA+T+WPR STVS++RSFLGLA YYRRFVEDFSRIASPLTQL+RKGTPFV
Subjt:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV

KAA0040542.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-13090.7Show/hide
Query:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK
        MAPAELKE KVQLQELL+KGFIRPSVSPWGA VLFVK+KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DI K
Subjt:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK

Query:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG
         AFRSRYGHY+F+VMSFGLTN PAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHL+QVLET RANKLYAKFSKCEFWL+KVTFL HVV SEG
Subjt:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG

Query:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV
        VSVDPAKIEA+T+WPR STVS++RSFLGLA YYRRFVEDFSRIASPLTQL+RKGTPFV
Subjt:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV

KAA0060745.1 pol protein [Cucumis melo var. makuwa]1.9e-13090.7Show/hide
Query:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK
        MAPAELKE KVQLQELL+KGFIRPSVSPWGA VLFVK+KDGSMRLCIDYRELNKVTVKNRYPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIRD DI K
Subjt:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK

Query:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG
         AFRSRYGHY+F+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHL+QVLET RANKLYAKFSKCEFWL+KVTFL HVV SEG
Subjt:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG

Query:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV
        VSVDPAKIEA+T+WPR STVS++RSFLGLA YYRRFVEDFSRIASPLTQL+RKGTPFV
Subjt:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV

KAA0063793.1 pol protein [Cucumis melo var. makuwa]8.7e-13191.09Show/hide
Query:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK
        MAPAELKE KVQLQELL+KGFIRPSVSPWGA VLFVK+KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DI K
Subjt:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK

Query:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG
         AFRSRYGHY+F+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHL+QVLET RANKLYAKFSKCEFWL+KVTFL HVV SEG
Subjt:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG

Query:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV
        VSVDPAKIEA+T+WPR STVS++RSFLGLA YYRRFVEDFSRIASPLTQL+RKGTPFV
Subjt:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV

TYK05193.1 pol protein [Cucumis melo var. makuwa]1.9e-13090.7Show/hide
Query:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK
        MAPAELKE KVQLQELL+KGFIRPSVSPWGA VLFVK+KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DI K
Subjt:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK

Query:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG
         AFRSRYGHY+F+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHL+QVLET RANKLYAKFSKCEFWL+KVTFL HVV SEG
Subjt:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG

Query:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV
        VSVDP KIEA+T+WPR STVS++RSFLGLA YYRRFVEDFSRIASPLTQL+RKGTPFV
Subjt:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV

TrEMBL top hitse value%identityAlignment
A0A5A7SSL3 Reverse transcriptase9.3e-13191.09Show/hide
Query:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK
        MAPAELKE KVQLQELL+KGFIRPSVSPWGA VLFVK+KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DI K
Subjt:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK

Query:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG
         AFRSRYGHY F+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHL+QVLET RANKLYAKFSKCEFWL+KVTFL HVV SEG
Subjt:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG

Query:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV
        VSVDPAKIEA+T+WPR STVS++RSFLGLA YYRRFVEDFSRIASPLTQL+RKGTPFV
Subjt:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV

A0A5A7TAT0 DNA/RNA polymerases superfamily protein1.2e-13090.7Show/hide
Query:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK
        MAPAELKE KVQLQELL+KGFIRPSVSPWGA VLFVK+KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DI K
Subjt:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK

Query:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG
         AFRSRYGHY+F+VMSFGLTN PAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHL+QVLET RANKLYAKFSKCEFWL+KVTFL HVV SEG
Subjt:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG

Query:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV
        VSVDPAKIEA+T+WPR STVS++RSFLGLA YYRRFVEDFSRIASPLTQL+RKGTPFV
Subjt:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV

A0A5A7V4E4 Reverse transcriptase9.3e-13190.7Show/hide
Query:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK
        MAPAELKE KVQLQELL+KGFIRPSVSPWGA VLFVK+KDGSMRLCIDYRELNKVTVKNRYPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIRD DI K
Subjt:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK

Query:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG
         AFRSRYGHY+F+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHL+QVLET RANKLYAKFSKCEFWL+KVTFL HVV SEG
Subjt:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG

Query:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV
        VSVDPAKIEA+T+WPR STVS++RSFLGLA YYRRFVEDFSRIASPLTQL+RKGTPFV
Subjt:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV

A0A5A7V6R2 Reverse transcriptase4.2e-13191.09Show/hide
Query:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK
        MAPAELKE KVQLQELL+KGFIRPSVSPWGA VLFVK+KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DI K
Subjt:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK

Query:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG
         AFRSRYGHY+F+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHL+QVLET RANKLYAKFSKCEFWL+KVTFL HVV SEG
Subjt:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG

Query:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV
        VSVDPAKIEA+T+WPR STVS++RSFLGLA YYRRFVEDFSRIASPLTQL+RKGTPFV
Subjt:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV

A0A5D3BZN1 Reverse transcriptase9.3e-13190.7Show/hide
Query:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK
        MAPAELKE KVQLQELL+KGFIRPSVSPWGA VLFVK+KDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DI K
Subjt:  MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHK

Query:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG
         AFRSRYGHY+F+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEA+HEEHL+QVLET RANKLYAKFSKCEFWL+KVTFL HVV SEG
Subjt:  IAFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEG

Query:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV
        VSVDP KIEA+T+WPR STVS++RSFLGLA YYRRFVEDFSRIASPLTQL+RKGTPFV
Subjt:  VSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.0e-4938.1Show/hide
Query:  KEWKVQLQELLNKGFIRPSVSPWGALVLFV-KRKDGS----MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHKI
        +E + Q+Q++LN+G IR S SP+ + +  V K++D S     R+ IDYR+LN++TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +    + K 
Subjt:  KEWKVQLQELLNKGFIRPSVSPWGALVLFV-KRKDGS----MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHKI

Query:  AFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEGV
        AF +++GHY++L M FGL NAPA F   MN + +  L+   +V++DDI+++S +  +H + L  V E      L  +  KCEF  ++ TFL HV+  +G+
Subjt:  AFRSRYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEGV

Query:  SVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRK
          +P KIEAI  +P  +   ++++FLGL  YYR+F+ +F+ IA P+T+  +K
Subjt:  SVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRK

P20825 Retrovirus-related Pol polyprotein from transposon 2973.0e-4937.75Show/hide
Query:  QLQELLNKGFIRPSVSPWGALVLFVKRKD-----GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHKIAFRSR
        Q+QE+LN+G IR S SP+ +    V +K         R+ IDYR+LN++T+ +RYP+P +D++  +L     F+ IDL  G+HQ+ + +  I K AF ++
Subjt:  QLQELLNKGFIRPSVSPWGALVLFVKRKD-----GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHKIAFRSR

Query:  YGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEGVSVDPA
         GHY++L M FGL NAPA F   MN + +  L+   +V++DDI+I+S +  +H   +  V        L  +  KCEF  K+  FL H+V  +G+  +P 
Subjt:  YGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEGVSVDPA

Query:  KIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGT
        K++AI S+P  +   ++R+FLGL  YYR+F+ +++ IA P+T   +K T
Subjt:  KIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGT

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.3e-4841.7Show/hide
Query:  LQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHKIAFRSRYGHYDF
        +Q+LL+  FI PS SP  + V+ V +KDG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D +K AF +  G Y++
Subjt:  LQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHKIAFRSRYGHYDF

Query:  LVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEGVSVDPAKIEAIT
         VM FGL NAP+ F   M   F+D    FV V++DDILI+S++  +H +HL  VLE  +   L  K  KC+F  ++  FL + +  + ++    K  AI 
Subjt:  LVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEGVSVDPAKIEAIT

Query:  SWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPL
         +P   TV + + FLG+  YYRRF+ + S+IA P+
Subjt:  SWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.4e-4636.18Show/hide
Query:  QLQELLNKGFIRPSVSPWGALVLFVKRK-----DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHKIAFRSR
        Q+ ELL  G IRPS SP+ + +  V +K     +   R+ +D++ LN VT+ + YP+P I+     L  A  F+ +DL SG+HQ+ +++SDI K AF + 
Subjt:  QLQELLNKGFIRPSVSPWGALVLFVKRK-----DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHKIAFRSR

Query:  YGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEGVSVDPA
         G Y+FL + FGL NAPA+F  +++ + ++ +     V+IDDI+++S+    H ++L  VL +     L     K  F   +V FL ++V ++G+  DP 
Subjt:  YGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEGVSVDPA

Query:  KIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSR
        K+ AI+  P  ++V +++ FLG+  YYR+F++D++++A PLT L+R
Subjt:  KIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSR

Q99315 Transposon Ty3-G Gag-Pol polyprotein3.3e-4841.7Show/hide
Query:  LQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHKIAFRSRYGHYDF
        +Q+LL+  FI PS SP  + V+ V +KDG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D +K AF +  G Y++
Subjt:  LQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHKIAFRSRYGHYDF

Query:  LVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEGVSVDPAKIEAIT
         VM FGL NAP+ F   M   F+D    FV V++DDILI+S++  +H +HL  VLE  +   L  K  KC+F  ++  FL + +  + ++    K  AI 
Subjt:  LVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEGVSVDPAKIEAIT

Query:  SWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPL
         +P   TV + + FLG+  YYRRF+ + S+IA P+
Subjt:  SWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein6.2e-1841.67Show/hide
Query:  HLYQVLETFRANKLYAKFSKCEFWLKKVTFLS--HVVFSEGVSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGT
        HL  VL+ +  ++ YA   KC F   ++ +L   H++  EGVS DPAK+EA+  WP     +++R FLGL  YYRRFV+++ +I  PLT+L +K +
Subjt:  HLYQVLETFRANKLYAKFSKCEFWLKKVTFLS--HVVFSEGVSVDPAKIEAITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCAGCTGAGCTAAAGGAGTGGAAGGTGCAGTTGCAGGAGTTGTTGAACAAGGGTTTCATTCGACCCAGTGTGTCACCTTGGGGAGCACTGGTGTTGTTC
GTGAAGAGGAAGGATGGGTCAATGCGCCTTTGCATTGACTACAGAGAGCTAAACAAGGTGACAGTCAAGAACCGCTATCCCTTGCCCAGGATTGATGATTTGTTC
GATCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATCGACCTACGATCAGGCTACCACCAGTTGAGGATAAGGGATAGTGATATTCATAAGATCGCTTTCCGTTCC
AGATACGGGCATTACGACTTCCTTGTGATGTCCTTTGGTTTGACTAATGCTCCTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACG
TTTGTTATAGTTTTCATTGACGACATTTTAATTTACTCCAAGACTGAGGCTAAGCATGAGGAGCATTTGTATCAGGTTTTGGAGACTTTTCGAGCTAATAAGTTG
TATGCCAAGTTCTCCAAGTGTGAGTTCTGGTTGAAGAAGGTGACTTTTCTCAGCCATGTGGTTTTCAGTGAGGGAGTTTCTGTGGACCCAGCAAAGATCGAAGCG
ATTACCAGTTGGCCTCGATCGTCTACAGTTAGCAAGGTTCGTAGTTTCTTGGGTTTAGCATGTTACTATAGGAGGTTCGTGGAAGACTTCTCTCGTATAGCCAGT
CCCTTGACTCAGTTAAGCAGGAAGGGGACTCCTTTTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCAGCTGAGCTAAAGGAGTGGAAGGTGCAGTTGCAGGAGTTGTTGAACAAGGGTTTCATTCGACCCAGTGTGTCACCTTGGGGAGCACTGGTGTTGTTC
GTGAAGAGGAAGGATGGGTCAATGCGCCTTTGCATTGACTACAGAGAGCTAAACAAGGTGACAGTCAAGAACCGCTATCCCTTGCCCAGGATTGATGATTTGTTC
GATCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATCGACCTACGATCAGGCTACCACCAGTTGAGGATAAGGGATAGTGATATTCATAAGATCGCTTTCCGTTCC
AGATACGGGCATTACGACTTCCTTGTGATGTCCTTTGGTTTGACTAATGCTCCTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACG
TTTGTTATAGTTTTCATTGACGACATTTTAATTTACTCCAAGACTGAGGCTAAGCATGAGGAGCATTTGTATCAGGTTTTGGAGACTTTTCGAGCTAATAAGTTG
TATGCCAAGTTCTCCAAGTGTGAGTTCTGGTTGAAGAAGGTGACTTTTCTCAGCCATGTGGTTTTCAGTGAGGGAGTTTCTGTGGACCCAGCAAAGATCGAAGCG
ATTACCAGTTGGCCTCGATCGTCTACAGTTAGCAAGGTTCGTAGTTTCTTGGGTTTAGCATGTTACTATAGGAGGTTCGTGGAAGACTTCTCTCGTATAGCCAGT
CCCTTGACTCAGTTAAGCAGGAAGGGGACTCCTTTTGTTTGA
Protein sequenceShow/hide protein sequence
MAPAELKEWKVQLQELLNKGFIRPSVSPWGALVLFVKRKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIHKIAFRS
RYGHYDFLVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAKHEEHLYQVLETFRANKLYAKFSKCEFWLKKVTFLSHVVFSEGVSVDPAKIEA
ITSWPRSSTVSKVRSFLGLACYYRRFVEDFSRIASPLTQLSRKGTPFV