CuGenDBv2

Gene ID	Cmc01g0019781
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr01:17710355..17711899
RNA-Seq Expression	Cmc01g0019781
Synteny	Cmc01g0019781
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0043565 - sequence-specific DNA binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR041588 - Integrase zinc-binding domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR036397 - Ribonuclease H superfamily IPR012337 - Ribonuclease H-like superfamily IPR001584 - Integrase, catalytic core

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

9.6e-264

90.1

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Query:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE
        MVLQTLRDNKLYAKFSKCEF LKQVSFLGHVVSKAGVSVDPAKIEA T WTRPSTVSEVRSFLGLA                       GAPFVWSKACE
Subjt:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE

Query:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
        D+FQNLKQKLVTAPVLTV DGSGSF+IYSD SKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Subjt:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF

Query:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK
        TQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITRQAP HRDLERAEIAVSVGAVTMQLAQLT+QPTLRQRIIDA S+DPYLVEK
Subjt:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK

Query:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL
        RGLAEAGQAVEFS+ SDGGLLFERRLCVPSDS VKT+LLSEAHSS FSMHPGSTKMY D+K+VYWWRNMKREVAEFVS+CLVCQQV+APRQKPAGLLQPL
Subjt:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL

Query:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA
        S+ EWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDA F SKFWK LQTA+GTRLDFSTA
Subjt:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA

Query:  FHPQTDGQTERLNQV
        FHPQTDGQTERLNQV
Subjt:  FHPQTDGQTERLNQV

KAA0057672.1 pol protein [Cucumis melo var. makuwa]

1.3e-263

89.9

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Query:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE
        MVLQTLRDNKLYAKFSKCEF LKQVSFLGHVVSKAGVSVDPAKIEA T WTRPSTVSEVRSFLGLA                       GAPFVWSKACE
Subjt:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE

Query:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
        D+FQNLKQKLVTAPVLTV DGSGSF+IYSD SKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Subjt:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF

Query:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK
        TQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITRQAP HRDLERAEIAVSVGAVTMQLAQLT+QPTLRQRIIDA S+DPYLVEK
Subjt:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK

Query:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL
        RGLAEAGQAVEFS+ SDGGLLFERRLCVPSDSAVKT+LL+EAHSS FSMHPGSTKMY DLK++YWWRNMKREVAEFVSKCLVCQQV+APRQKPAGLLQPL
Subjt:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL

Query:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA
        S+ EWKWENVSMDFI GLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVPVSIVSDRDA F SKFWKGLQTA+GTRLDFSTA
Subjt:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA

Query:  FHPQTDGQTERLNQV
        FHPQTDGQTERLN+V
Subjt:  FHPQTDGQTERLNQV

KAA0062112.1 pol protein [Cucumis melo var. makuwa]

4.3e-264

90.1

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Query:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE
        MVLQTLRDNKLYAKFSKCEF LKQVSFLGHVVSK GVSVDPAKIEA T WTRPSTVSEVRSFLGLA                       GAPFVWSKACE
Subjt:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE

Query:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
        D+FQNLKQKLVTAPVLTV DGSGSF+IYSD SKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Subjt:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF

Query:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK
        TQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITRQAP HRDLERAEIAVSVGAVTMQLAQLT+QPTLRQRIIDA S+DPYLVEK
Subjt:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK

Query:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL
        RGLAEAGQAVEFS+ SDGGLLFERRLCVPSDSAVKT+LLSEAHSS FSMHPGSTKMY DLK+VYWWRNMKREVAEFVS+CLVCQQV+APRQKPAGLLQPL
Subjt:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL

Query:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA
        S+ EWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT+SKWAQLYMSEIVRLHGVPVSIVSDRDA F SKFWKGLQT++GTRLDFSTA
Subjt:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA

Query:  FHPQTDGQTERLNQV
        FHPQTDGQTERLNQV
Subjt:  FHPQTDGQTERLNQV

KAA0062835.1 pol protein [Cucumis melo var. makuwa]

2.4e-262

89.51

Show/hide

Query:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE
        MVLQTLRDNKLYAKFSKCEF LKQVSFLGHVVSKAGVSVDPAKIEA T WTRPSTVSEVRSF+GLA                       GAPF+WSKACE
Subjt:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE

Query:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
        D+FQNLKQKLVTAPVLTV DGSGSF+IYSD SKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAA+VFALKIWRH+LYGEKIQIFTDHKSLKYFF
Subjt:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF

Query:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK
        TQKELNMRQRRWLELVKDYD EILYH GKANVVADALSRKVSHSAALITRQAP HRDLERAEIAVSVGAVTMQLAQLT+QPTLRQRIIDA S+DPYLVEK
Subjt:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK

Query:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL
        RGLAEAGQAVEFS+ SDGGLLFERRLCVPSDSAVKT+LLSEAHSS FSMHPGSTKMY DLK+VYWWRNMKREVAEFVS+CLVCQQV+APRQKPAGLLQPL
Subjt:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL

Query:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA
        S+ EWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA+KWAQLYMSEIVRLHGVPVSIVSDRDA F SKFWKGLQTA+GTRLDFSTA
Subjt:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA

Query:  FHPQTDGQTERLNQV
        FHPQTDGQTERLNQV
Subjt:  FHPQTDGQTERLNQV

TYK01613.1 pol protein [Cucumis melo var. makuwa]

5.6e-264

90.29

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Query:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE
        MVLQTLRDNKLYAKFSKCEF LKQVSFLGHVVSKAGVSVDPAKIEA T WTRPSTVSEVRSFLGLA                       GAPFVWSKACE
Subjt:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE

Query:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
        D+FQ LKQKLVTAPVLTV DGSGSF+IYSD SKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Subjt:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF

Query:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK
        TQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITRQAP HRDLERAEIAVSVGAVTMQLAQLT+QPTLRQRIIDA S+DPYLVEK
Subjt:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK

Query:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL
        RGLAEAGQ  EFS+ SDGGLLFERRLCVPSDSAVKT+LLSEAHSS FSMHPGSTKMY DLK+VYWWRNMKREVAEFVSKCLVCQQV+APRQKPAGLLQPL
Subjt:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL

Query:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA
        S+ EWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDA F SKFWKGLQTA+GTRLDFSTA
Subjt:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA

Query:  FHPQTDGQTERLNQV
        FHPQTDGQTERLNQV
Subjt:  FHPQTDGQTERLNQV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U330 Reverse transcriptase

4.7e-264

90.1

Show/hide

Query:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE
        MVLQTLRDNKLYAKFSKCEF LKQVSFLGHVVSKAGVSVDPAKIEA T WTRPSTVSEVRSFLGLA                       GAPFVWSKACE
Subjt:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE

Query:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
        D+FQNLKQKLVTAPVLTV DGSGSF+IYSD SKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Subjt:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF

Query:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK
        TQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITRQAP HRDLERAEIAVSVGAVTMQLAQLT+QPTLRQRIIDA S+DPYLVEK
Subjt:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK

Query:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL
        RGLAEAGQAVEFS+ SDGGLLFERRLCVPSDS VKT+LLSEAHSS FSMHPGSTKMY D+K+VYWWRNMKREVAEFVS+CLVCQQV+APRQKPAGLLQPL
Subjt:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL

Query:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA
        S+ EWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDA F SKFWK LQTA+GTRLDFSTA
Subjt:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA

Query:  FHPQTDGQTERLNQV
        FHPQTDGQTERLNQV
Subjt:  FHPQTDGQTERLNQV

A0A5A7UP94 Pol protein

6.1e-264

89.9

Show/hide

Query:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE
        MVLQTLRDNKLYAKFSKCEF LKQVSFLGHVVSKAGVSVDPAKIEA T WTRPSTVSEVRSFLGLA                       GAPFVWSKACE
Subjt:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE

Query:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
        D+FQNLKQKLVTAPVLTV DGSGSF+IYSD SKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Subjt:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF

Query:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK
        TQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITRQAP HRDLERAEIAVSVGAVTMQLAQLT+QPTLRQRIIDA S+DPYLVEK
Subjt:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK

Query:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL
        RGLAEAGQAVEFS+ SDGGLLFERRLCVPSDSAVKT+LL+EAHSS FSMHPGSTKMY DLK++YWWRNMKREVAEFVSKCLVCQQV+APRQKPAGLLQPL
Subjt:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL

Query:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA
        S+ EWKWENVSMDFI GLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT SKWAQLYMSEIVRLHGVPVSIVSDRDA F SKFWKGLQTA+GTRLDFSTA
Subjt:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA

Query:  FHPQTDGQTERLNQV
        FHPQTDGQTERLN+V
Subjt:  FHPQTDGQTERLNQV

A0A5A7V1N3 Reverse transcriptase

2.1e-264

90.1

Show/hide

Query:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE
        MVLQTLRDNKLYAKFSKCEF LKQVSFLGHVVSK GVSVDPAKIEA T WTRPSTVSEVRSFLGLA                       GAPFVWSKACE
Subjt:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE

Query:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
        D+FQNLKQKLVTAPVLTV DGSGSF+IYSD SKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Subjt:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF

Query:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK
        TQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITRQAP HRDLERAEIAVSVGAVTMQLAQLT+QPTLRQRIIDA S+DPYLVEK
Subjt:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK

Query:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL
        RGLAEAGQAVEFS+ SDGGLLFERRLCVPSDSAVKT+LLSEAHSS FSMHPGSTKMY DLK+VYWWRNMKREVAEFVS+CLVCQQV+APRQKPAGLLQPL
Subjt:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL

Query:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA
        S+ EWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT+SKWAQLYMSEIVRLHGVPVSIVSDRDA F SKFWKGLQT++GTRLDFSTA
Subjt:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA

Query:  FHPQTDGQTERLNQV
        FHPQTDGQTERLNQV
Subjt:  FHPQTDGQTERLNQV

A0A5A7VAA9 Pol protein

1.1e-262

89.51

Show/hide

Query:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE
        MVLQTLRDNKLYAKFSKCEF LKQVSFLGHVVSKAGVSVDPAKIEA T WTRPSTVSEVRSF+GLA                       GAPF+WSKACE
Subjt:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE

Query:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
        D+FQNLKQKLVTAPVLTV DGSGSF+IYSD SKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAA+VFALKIWRH+LYGEKIQIFTDHKSLKYFF
Subjt:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF

Query:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK
        TQKELNMRQRRWLELVKDYD EILYH GKANVVADALSRKVSHSAALITRQAP HRDLERAEIAVSVGAVTMQLAQLT+QPTLRQRIIDA S+DPYLVEK
Subjt:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK

Query:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL
        RGLAEAGQAVEFS+ SDGGLLFERRLCVPSDSAVKT+LLSEAHSS FSMHPGSTKMY DLK+VYWWRNMKREVAEFVS+CLVCQQV+APRQKPAGLLQPL
Subjt:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL

Query:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA
        S+ EWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA+KWAQLYMSEIVRLHGVPVSIVSDRDA F SKFWKGLQTA+GTRLDFSTA
Subjt:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA

Query:  FHPQTDGQTERLNQV
        FHPQTDGQTERLNQV
Subjt:  FHPQTDGQTERLNQV

A0A5D3BPI1 Reverse transcriptase

2.7e-264

90.29

Show/hide

Query:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE
        MVLQTLRDNKLYAKFSKCEF LKQVSFLGHVVSKAGVSVDPAKIEA T WTRPSTVSEVRSFLGLA                       GAPFVWSKACE
Subjt:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLA-----------------------GAPFVWSKACE

Query:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
        D+FQ LKQKLVTAPVLTV DGSGSF+IYSD SKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF
Subjt:  DNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF

Query:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK
        TQKELNMRQRRWLELVKDYDCEILYH GKANVVADALSRKVSHSAALITRQAP HRDLERAEIAVSVGAVTMQLAQLT+QPTLRQRIIDA S+DPYLVEK
Subjt:  TQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAP-HRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEK

Query:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL
        RGLAEAGQ  EFS+ SDGGLLFERRLCVPSDSAVKT+LLSEAHSS FSMHPGSTKMY DLK+VYWWRNMKREVAEFVSKCLVCQQV+APRQKPAGLLQPL
Subjt:  RGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPL

Query:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA
        S+ EWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDA F SKFWKGLQTA+GTRLDFSTA
Subjt:  SVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTA

Query:  FHPQTDGQTERLNQV
        FHPQTDGQTERLNQV
Subjt:  FHPQTDGQTERLNQV

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

3.1e-63

30.4

Show/hide

Query:  VLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLAG-----------------------APFVWSKACED
        VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+    W +P    E+R FLG                            + W+     
Subjt:  VLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLAG-----------------------APFVWSKACED

Query:  NFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHK
          +N+KQ LV+ PVL   D S   L+ +D S   +G VL Q+        V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH+
Subjt:  NFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHK

Query:  SLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAPHRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSS
        +L    T +    N R  RW   ++D++ EI Y  G AN +ADALSR V  +  +       +D E   I          + Q++I    + +++  +++
Subjt:  SLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAPHRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSS

Query:  DPYLVEKRGLAEAGQAVEFSIFSDGGLLFERR--LCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQ
        D  L+    L    + VE +I    GLL   +  + +P+D+ +   ++ + H     +HPG   + + + + + W+ +++++ E+V  C  CQ  ++   
Subjt:  DPYLVEKRGLAEAGQAVEFSIFSDGGLLFERR--LCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQ

Query:  KPAGLLQPLSVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAI
        KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  F S+ WK      
Subjt:  KPAGLLQPLSVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAI

Query:  GTRLDFSTAFHPQTDGQTERLNQ
           + FS  + PQTDGQTER NQ
Subjt:  GTRLDFSTAFHPQTDGQTERLNQ

P0CT35 Transposon Tf2-2 polyprotein

3.1e-63

30.4

Show/hide

Query:  VLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLAG-----------------------APFVWSKACED
        VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+    W +P    E+R FLG                            + W+     
Subjt:  VLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLAG-----------------------APFVWSKACED

Query:  NFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHK
          +N+KQ LV+ PVL   D S   L+ +D S   +G VL Q+        V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH+
Subjt:  NFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHK

Query:  SLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAPHRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSS
        +L    T +    N R  RW   ++D++ EI Y  G AN +ADALSR V  +  +       +D E   I          + Q++I    + +++  +++
Subjt:  SLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAPHRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSS

Query:  DPYLVEKRGLAEAGQAVEFSIFSDGGLLFERR--LCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQ
        D  L+    L    + VE +I    GLL   +  + +P+D+ +   ++ + H     +HPG   + + + + + W+ +++++ E+V  C  CQ  ++   
Subjt:  DPYLVEKRGLAEAGQAVEFSIFSDGGLLFERR--LCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQ

Query:  KPAGLLQPLSVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAI
        KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  F S+ WK      
Subjt:  KPAGLLQPLSVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAI

Query:  GTRLDFSTAFHPQTDGQTERLNQ
           + FS  + PQTDGQTER NQ
Subjt:  GTRLDFSTAFHPQTDGQTERLNQ

P0CT36 Transposon Tf2-3 polyprotein

3.1e-63

30.4

Show/hide

Query:  VLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLAG-----------------------APFVWSKACED
        VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+    W +P    E+R FLG                            + W+     
Subjt:  VLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLAG-----------------------APFVWSKACED

Query:  NFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHK
          +N+KQ LV+ PVL   D S   L+ +D S   +G VL Q+        V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH+
Subjt:  NFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHK

Query:  SLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAPHRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSS
        +L    T +    N R  RW   ++D++ EI Y  G AN +ADALSR V  +  +       +D E   I          + Q++I    + +++  +++
Subjt:  SLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAPHRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSS

Query:  DPYLVEKRGLAEAGQAVEFSIFSDGGLLFERR--LCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQ
        D  L+    L    + VE +I    GLL   +  + +P+D+ +   ++ + H     +HPG   + + + + + W+ +++++ E+V  C  CQ  ++   
Subjt:  DPYLVEKRGLAEAGQAVEFSIFSDGGLLFERR--LCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQ

Query:  KPAGLLQPLSVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAI
        KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  F S+ WK      
Subjt:  KPAGLLQPLSVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAI

Query:  GTRLDFSTAFHPQTDGQTERLNQ
           + FS  + PQTDGQTER NQ
Subjt:  GTRLDFSTAFHPQTDGQTERLNQ

P0CT41 Transposon Tf2-12 polyprotein

3.1e-63

30.4

Show/hide

Query:  VLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLAG-----------------------APFVWSKACED
        VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+    W +P    E+R FLG                            + W+     
Subjt:  VLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLAG-----------------------APFVWSKACED

Query:  NFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHK
          +N+KQ LV+ PVL   D S   L+ +D S   +G VL Q+        V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH+
Subjt:  NFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHK

Query:  SLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAPHRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSS
        +L    T +    N R  RW   ++D++ EI Y  G AN +ADALSR V  +  +       +D E   I          + Q++I    + +++  +++
Subjt:  SLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAPHRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSS

Query:  DPYLVEKRGLAEAGQAVEFSIFSDGGLLFERR--LCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQ
        D  L+    L    + VE +I    GLL   +  + +P+D+ +   ++ + H     +HPG   + + + + + W+ +++++ E+V  C  CQ  ++   
Subjt:  DPYLVEKRGLAEAGQAVEFSIFSDGGLLFERR--LCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQ

Query:  KPAGLLQPLSVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAI
        KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  F S+ WK      
Subjt:  KPAGLLQPLSVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAI

Query:  GTRLDFSTAFHPQTDGQTERLNQ
           + FS  + PQTDGQTER NQ
Subjt:  GTRLDFSTAFHPQTDGQTERLNQ

Q9UR07 Transposon Tf2-11 polyprotein

3.1e-63

30.4

Show/hide

Query:  VLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLAG-----------------------APFVWSKACED
        VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+    W +P    E+R FLG                            + W+     
Subjt:  VLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLAG-----------------------APFVWSKACED

Query:  NFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHK
          +N+KQ LV+ PVL   D S   L+ +D S   +G VL Q+        V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH+
Subjt:  NFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHK

Query:  SLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAPHRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSS
        +L    T +    N R  RW   ++D++ EI Y  G AN +ADALSR V  +  +       +D E   I          + Q++I    + +++  +++
Subjt:  SLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSHSAALITRQAPHRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSS

Query:  DPYLVEKRGLAEAGQAVEFSIFSDGGLLFERR--LCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQ
        D  L+    L    + VE +I    GLL   +  + +P+D+ +   ++ + H     +HPG   + + + + + W+ +++++ E+V  C  CQ  ++   
Subjt:  DPYLVEKRGLAEAGQAVEFSIFSDGGLLFERR--LCVPSDSAVKTKLLSEAHSSLFSMHPGSTKMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQ

Query:  KPAGLLQPLSVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAI
        KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  F S+ WK      
Subjt:  KPAGLLQPLSVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDAHFNSKFWKGLQTAI

Query:  GTRLDFSTAFHPQTDGQTERLNQ
           + FS  + PQTDGQTER NQ
Subjt:  GTRLDFSTAFHPQTDGQTERLNQ

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

5.7e-12

35.54

Show/hide

Query:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLG--HVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLAG--APFV--------------------WSKAC
        MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA   W  P   +E+R FLGL G    FV                    W++  
Subjt:  MVLQTLRDNKLYAKFSKCEFCLKQVSFLG--HVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLAG--APFV--------------------WSKAC

Query:  EDNFQNLKQKLVTAPVLTVLD
           F+ LK  + T PVL + D
Subjt:  EDNFQNLKQKLVTAPVLTVLD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTTTACAAACACTTCGAGATAATAAATTGTATGCAAAGTTCTCGAAATGCGAGTTTTGTCTAAAGCAGGTGTCCTTTCTAGGCCATGTGGTGTCTAAGGCTGGAGT
TTCTGTGGATCCAGCTAAGATAGAAGCGAGCACCAGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGCTTAGCAGGAGCTCCTTTTGTTTGGAGCA
AGGCATGTGAGGACAATTTCCAGAACCTCAAACAGAAACTAGTTACTGCACCGGTTCTTACTGTACTTGATGGTTCTGGCAGTTTTTTGATTTATAGTGATGTTTCCAAG
AAGGGTTTGGGTTGTGTACTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAAAATTACCCTACACACGATTTAGAGTTGGCAGC
AGTGGTTTTTGCATTGAAAATATGGAGGCATTACTTGTATGGTGAAAAGATACAGATCTTCACGGACCATAAGAGCTTGAAATATTTCTTTACTCAGAAGGAATTGAATA
TGAGGCAGCGAAGATGGCTTGAGTTAGTGAAGGATTATGATTGTGAGATACTGTATCATCTAGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACAT
TCAGCAGCACTTATTACCCGACAAGCCCCACATCGAGATCTTGAGAGGGCTGAGATTGCAGTGTCAGTAGGGGCAGTCACTATGCAGTTAGCCCAGTTGACGATACAGCC
GACTTTGAGGCAAAGGATCATTGATGCTCATAGTAGCGATCCTTATTTGGTTGAGAAGCGTGGCCTAGCAGAGGCAGGGCAAGCTGTTGAGTTCTCCATATTCTCTGATG
GTGGACTTTTGTTTGAGAGGCGTCTCTGTGTGCCATCAGATAGTGCGGTTAAAACGAAATTATTATCTGAGGCTCACAGTTCCCTATTTTCCATGCACCCCGGTAGTACG
AAGATGTATCACGACCTGAAGCAGGTTTATTGGTGGCGTAATATGAAAAGAGAGGTGGCAGAATTTGTTAGTAAATGCTTGGTGTGTCAGCAAGTTAGGGCACCAAGGCA
GAAACCAGCGGGTTTATTACAACCCTTGAGCGTATTGGAATGGAAATGGGAAAACGTGTCCATGGATTTCATTACAGGACTGCCAAGAACTCTGAGGGGTTTTACAGTGA
TTTGGGTTGTGGTTGACAGGCTTACCAAGTCAGCGCATTTCGTTCCGGGTAAATCCACCTACACCGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTAAGATTA
CATGGAGTGCCAGTGTCAATTGTTTCTGATAGAGATGCCCATTTCAATTCCAAATTTTGGAAGGGTTTGCAGACTGCTATAGGCACGAGGTTAGACTTTAGTACAGCTTT
CCATCCACAGACTGATGGTCAGACTGAGCGTCTGAACCAAGTTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVLQTLRDNKLYAKFSKCEFCLKQVSFLGHVVSKAGVSVDPAKIEASTSWTRPSTVSEVRSFLGLAGAPFVWSKACEDNFQNLKQKLVTAPVLTVLDGSGSFLIYSDVSK
KGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHLGKANVVADALSRKVSH
SAALITRQAPHRDLERAEIAVSVGAVTMQLAQLTIQPTLRQRIIDAHSSDPYLVEKRGLAEAGQAVEFSIFSDGGLLFERRLCVPSDSAVKTKLLSEAHSSLFSMHPGST
KMYHDLKQVYWWRNMKREVAEFVSKCLVCQQVRAPRQKPAGLLQPLSVLEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRL
HGVPVSIVSDRDAHFNSKFWKGLQTAIGTRLDFSTAFHPQTDGQTERLNQV

Cmc01g0019781 (gene) of Melon (Charmono) v1.1 genome