CuGenDBv2

Gene ID	Cmc01g0020061
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr01:18081176..18082183
RNA-Seq Expression	Cmc01g0020061
Synteny	Cmc01g0020061
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

1.4e-189

97.91

Show/hide

Query:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT
        MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGD EAILVIIDRFSKYATFIPATKQ SAETTAQLFFKH+VKLWGVPT
Subjt:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT

Query:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
        SIVSDRDG+FIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
Subjt:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV

Query:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
        DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
Subjt:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW

Query:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS
        +KIYPVIHVSNLKPYHQDTEDLQRN+VTRP+IDLS
Subjt:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS

KAA0053339.1 reverse transcriptase [Cucumis melo var. makuwa]

1.4e-189

97.91

Show/hide

Query:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT
        MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGD EAILVIIDRFSKYATFIPATKQ SAETTAQLFFKH+VKLWGVPT
Subjt:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT

Query:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
        SIVSDRDG+FIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
Subjt:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV

Query:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
        DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
Subjt:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW

Query:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS
        +KIYPVIHVSNLKPYHQDTEDLQRN+VTRP+IDLS
Subjt:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

1.4e-189

97.91

Show/hide

Query:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT
        MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGD EAILVIIDRFSKYATFIPATKQ SAETTAQLFFKH+VKLWGVPT
Subjt:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT

Query:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
        SIVSDRDG+FIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
Subjt:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV

Query:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
        DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
Subjt:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW

Query:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS
        +KIYPVIHVSNLKPYHQDTEDLQRN+VTRP+IDLS
Subjt:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]

1.4e-189

97.91

Show/hide

Query:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT
        MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGD EAILVIIDRFSKYATFIPATKQ SAETTAQLFFKH+VKLWGVPT
Subjt:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT

Query:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
        SIVSDRDG+FIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
Subjt:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV

Query:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
        DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
Subjt:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW

Query:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS
        +KIYPVIHVSNLKPYHQDTEDLQRN+VTRP+IDLS
Subjt:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS

TYK28713.1 reverse transcriptase [Cucumis melo var. makuwa]

1.4e-189

97.91

Show/hide

Query:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT
        MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGD EAILVIIDRFSKYATFIPATKQ SAETTAQLFFKH+VKLWGVPT
Subjt:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT

Query:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
        SIVSDRDG+FIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
Subjt:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV

Query:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
        DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
Subjt:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW

Query:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS
        +KIYPVIHVSNLKPYHQDTEDLQRN+VTRP+IDLS
Subjt:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UXR6 Reverse transcriptase

6.8e-190

97.91

Show/hide

Query:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT
        MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGD EAILVIIDRFSKYATFIPATKQ SAETTAQLFFKH+VKLWGVPT
Subjt:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT

Query:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
        SIVSDRDG+FIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
Subjt:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV

Query:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
        DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
Subjt:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW

Query:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS
        +KIYPVIHVSNLKPYHQDTEDLQRN+VTRP+IDLS
Subjt:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS

A0A5D3B7E7 Reverse transcriptase

6.8e-190

97.91

Show/hide

Query:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT
        MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGD EAILVIIDRFSKYATFIPATKQ SAETTAQLFFKH+VKLWGVPT
Subjt:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT

Query:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
        SIVSDRDG+FIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
Subjt:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV

Query:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
        DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
Subjt:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW

Query:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS
        +KIYPVIHVSNLKPYHQDTEDLQRN+VTRP+IDLS
Subjt:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS

A0A5D3BYE6 Reverse transcriptase

6.8e-190

97.91

Show/hide

Query:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT
        MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGD EAILVIIDRFSKYATFIPATKQ SAETTAQLFFKH+VKLWGVPT
Subjt:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT

Query:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
        SIVSDRDG+FIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
Subjt:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV

Query:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
        DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
Subjt:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW

Query:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS
        +KIYPVIHVSNLKPYHQDTEDLQRN+VTRP+IDLS
Subjt:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS

A0A5D3C4R1 Reverse transcriptase

6.8e-190

97.91

Show/hide

Query:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT
        MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGD EAILVIIDRFSKYATFIPATKQ SAETTAQLFFKH+VKLWGVPT
Subjt:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT

Query:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
        SIVSDRDG+FIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
Subjt:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV

Query:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
        DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
Subjt:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW

Query:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS
        +KIYPVIHVSNLKPYHQDTEDLQRN+VTRP+IDLS
Subjt:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS

A0A5D3DY93 Reverse transcriptase

6.8e-190

97.91

Show/hide

Query:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT
        MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGD EAILVIIDRFSKYATFIPATKQ SAETTAQLFFKH+VKLWGVPT
Subjt:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT

Query:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
        SIVSDRDG+FIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
Subjt:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV

Query:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
        DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW
Subjt:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTW

Query:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS
        +KIYPVIHVSNLKPYHQDTEDLQRN+VTRP+IDLS
Subjt:  IKIYPVIHVSNLKPYHQDTEDLQRNIVTRPSIDLS

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

1.2e-45

34.37

Show/hide

Query:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT
        +R  + +Y + C  CQ +K    K  G L P+P   RPWES+SMDFIT LP+     A+ V++DRFSK A  +P TK  +AE TA++F + ++  +G P 
Subjt:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT

Query:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
         I++D D  F    W +        +  S  Y PQTDGQTER N  +E+ LR   +     WV  + + Q  +N    S+T  +PFEIV    P L  L 
Subjt:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV

Query:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPT
           F+ K  +    ++E  Q     + +L   + +MKK+ D K + + EF+ GD V++K           K  +L   + GP  VL+K G  +Y + LP 
Subjt:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPT

Query:  WIK--IYPVIHVSNLKPYHQDTE
         IK       HVS+L+ Y  ++E
Subjt:  WIK--IYPVIHVSNLKPYHQDTE

P0CT35 Transposon Tf2-2 polyprotein

1.2e-45

34.37

Show/hide

Query:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT
        +R  + +Y + C  CQ +K    K  G L P+P   RPWES+SMDFIT LP+     A+ V++DRFSK A  +P TK  +AE TA++F + ++  +G P 
Subjt:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT

Query:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
         I++D D  F    W +        +  S  Y PQTDGQTER N  +E+ LR   +     WV  + + Q  +N    S+T  +PFEIV    P L  L 
Subjt:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV

Query:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPT
           F+ K  +    ++E  Q     + +L   + +MKK+ D K + + EF+ GD V++K           K  +L   + GP  VL+K G  +Y + LP 
Subjt:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPT

Query:  WIK--IYPVIHVSNLKPYHQDTE
         IK       HVS+L+ Y  ++E
Subjt:  WIK--IYPVIHVSNLKPYHQDTE

P0CT36 Transposon Tf2-3 polyprotein

1.2e-45

34.37

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Query:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT
        +R  + +Y + C  CQ +K    K  G L P+P   RPWES+SMDFIT LP+     A+ V++DRFSK A  +P TK  +AE TA++F + ++  +G P 
Subjt:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT

Query:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
         I++D D  F    W +        +  S  Y PQTDGQTER N  +E+ LR   +     WV  + + Q  +N    S+T  +PFEIV    P L  L 
Subjt:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV

Query:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPT
           F+ K  +    ++E  Q     + +L   + +MKK+ D K + + EF+ GD V++K           K  +L   + GP  VL+K G  +Y + LP 
Subjt:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPT

Query:  WIK--IYPVIHVSNLKPYHQDTE
         IK       HVS+L+ Y  ++E
Subjt:  WIK--IYPVIHVSNLKPYHQDTE

P0CT41 Transposon Tf2-12 polyprotein

1.2e-45

34.37

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Query:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT
        +R  + +Y + C  CQ +K    K  G L P+P   RPWES+SMDFIT LP+     A+ V++DRFSK A  +P TK  +AE TA++F + ++  +G P 
Subjt:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT

Query:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
         I++D D  F    W +        +  S  Y PQTDGQTER N  +E+ LR   +     WV  + + Q  +N    S+T  +PFEIV    P L  L 
Subjt:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV

Query:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPT
           F+ K  +    ++E  Q     + +L   + +MKK+ D K + + EF+ GD V++K           K  +L   + GP  VL+K G  +Y + LP 
Subjt:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPT

Query:  WIK--IYPVIHVSNLKPYHQDTE
         IK       HVS+L+ Y  ++E
Subjt:  WIK--IYPVIHVSNLKPYHQDTE

Q9UR07 Transposon Tf2-11 polyprotein

1.2e-45

34.37

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Query:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT
        +R  + +Y + C  CQ +K    K  G L P+P   RPWES+SMDFIT LP+     A+ V++DRFSK A  +P TK  +AE TA++F + ++  +G P 
Subjt:  MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPT

Query:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV
         I++D D  F    W +        +  S  Y PQTDGQTER N  +E+ LR   +     WV  + + Q  +N    S+T  +PFEIV    P L  L 
Subjt:  SIVSDRDGKFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLV

Query:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPT
           F+ K  +    ++E  Q     + +L   + +MKK+ D K + + EF+ GD V++K           K  +L   + GP  VL+K G  +Y + LP 
Subjt:  DHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPT

Query:  WIK--IYPVIHVSNLKPYHQDTE
         IK       HVS+L+ Y  ++E
Subjt:  WIK--IYPVIHVSNLKPYHQDTE

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGAGATGATGTCATGCAGTACACTAAGACGTGTCTCATCTGCCAACAAGATAAGGTAGAGAAAGTGAAGGTTGCTGGACTTCTTGACCCTCTACCGGTTCCAACAAG
ACCTTGGGAGAGTGTCTCTATGGACTTCATCACCCATCTCCCTAAGGTAGGCGACCTTGAAGCCATTTTAGTCATCATCGATCGTTTTTCAAAGTATGCCACCTTCATCC
CCGCCACCAAGCAGCGTTCAGCAGAAACAACAGCTCAATTGTTCTTTAAGCATATTGTTAAATTGTGGGGAGTCCCGACAAGTATAGTGAGCGACAGAGATGGCAAATTC
ATTGGCTCCTTCTGGACGGAGTTATTTTCCTTCTTGGGGACGAGTCTGAACATATCATCAAGCTACCATCCCCAAACTGACGGCCAGACTGAGCGATTCAACAGCATGCT
CGAGGAATACTTGCGCCATTTTGTAAACGCAAGGCAAAAGAATTGGGTCCAGCTGTTGGACGTAGCCCAATTCTGTTTCAACGCTCAGACAAGTTCATCTACAGGGAGAA
GCCCATTTGAGATTGTTTCTGGGAGGCAACCAGTACTGCCACACCTTGTTGATCATCCTTTTGCAGGGAAGAACCCTCAAGCCCTCAATTTCACGAAGGAGTGGAGACAG
ACAAACGACATCGCCCGAGCATACTTAGAAAAAGCATCGAAGCGGATGAAGAAGTGGGCAGATAAGAAGCGACGACCCCTTGAGTTTCGAGCGGGAGACCAGGTACTCAT
CAAACTACGACCAGAGCAAGTCAGATTTCGAGGACGCAAAGACCAACGTCTCGTCAGGAAGTACGAAGGACCAGTTGAAGTGCTGAAAAAGGTAGGGAATACTTCTTACA
GAGTAGCGTTGCCCACATGGATTAAAATCTACCCAGTAATTCATGTTAGCAACCTGAAGCCATACCACCAAGACACAGAAGACCTGCAGCGGAATATCGTAACTCGCCCA
AGTATCGACCTTAGTTAG

mRNA sequence

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Protein sequence

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MRDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDLEAILVIIDRFSKYATFIPATKQRSAETTAQLFFKHIVKLWGVPTSIVSDRDGKF
IGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQ
TNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWIKIYPVIHVSNLKPYHQDTEDLQRNIVTRP
SIDLS

Cmc01g0020061 (gene) of Melon (Charmono) v1.1 genome