CuGenDBv2

Gene ID	Cmc01g0020111
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Genome location	CMiso1.1chr01:18158092..18158667
RNA-Seq Expression	Cmc01g0020111
Synteny	Cmc01g0020111
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0098869 - cellular oxidant detoxification (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004601 - peroxidase activity (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040958.1 peroxidase 64 [Cucumis melo var. makuwa]

1.1e-66

69.74

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Query:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN
        +LLVKKK  S WRFCVDY A+NN T+PDK  I ++EELFD+LN ASLFS  DLK+GYHQIRM E DI KT FRTHEGHY FLVM FGLTNAPATFQ+ MN
Subjt:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN

Query:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
         +FRP+LRKFVLVFF+DIL    + EEH+ HL  +L+TLREH LY NKKKC FA+S++EYL HII G  VEVDPEKI+SIA+W  P NVRE+ GF
Subjt:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

KAA0048423.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.5e-66

68.21

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Query:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN
        +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQIRM + DIEKT FRTHEGHY FLVM FGLTNAPATFQS MN
Subjt:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN

Query:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
         +FRP+LRKFVLVFF+DIL    + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I  W  P NVRE  GF
Subjt:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

KAA0052233.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]

1.5e-66

68.72

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Query:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN
        +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQIRM + DIEKT FRTHEGHY FLVMSFGLTNAPATFQS MN
Subjt:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN

Query:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
         +FRP+LRKFVLVFF+DIL    + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I  W  P NVRE  GF
Subjt:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

KAA0065392.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.5e-66

68.21

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Query:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN
        +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQIRM + DIEKT FRTHEGHY FLVM FGLTNAPATFQS MN
Subjt:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN

Query:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
         +FRP+LRKFVLVFF+DIL    + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I  W  P NVRE  GF
Subjt:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

TYK30083.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.5e-66

68.21

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Query:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN
        +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQIRM + DIEKT FRTHEGHY FLVM FGLTNAPATFQS MN
Subjt:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN

Query:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
         +FRP+LRKFVLVFF+DIL    + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I  W  P NVRE  GF
Subjt:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMQ7 Ty3/gypsy retrotransposon protein

2.7e-66

68.21

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Query:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN
        +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQIRM + DIEKT FRTHEGHY FLVM FGLTNAPATFQS MN
Subjt:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN

Query:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
         +FRP+LRKFVLVFF+DIL    + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I  W  P NVRE  GF
Subjt:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

A0A5A7U8I6 Transposon Ty3-G Gag-Pol polyprotein

7.0e-67

68.72

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Query:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN
        +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQIRM + DIEKT FRTHEGHY FLVMSFGLTNAPATFQS MN
Subjt:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN

Query:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
         +FRP+LRKFVLVFF+DIL    + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I  W  P NVRE  GF
Subjt:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

A0A5D3B8Y6 Ty3/gypsy retrotransposon protein

2.7e-66

68.21

Show/hide

Query:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN
        +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQIRM + DIEKT FRTHEGHY FLVM FGLTNAPATFQS MN
Subjt:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN

Query:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
         +FRP+LRKFVLVFF+DIL    + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I  W  P NVRE  GF
Subjt:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

A0A5D3D9X2 Peroxidase 64

5.4e-67

69.74

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Query:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN
        +LLVKKK  S WRFCVDY A+NN T+PDK  I ++EELFD+LN ASLFS  DLK+GYHQIRM E DI KT FRTHEGHY FLVM FGLTNAPATFQ+ MN
Subjt:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN

Query:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
         +FRP+LRKFVLVFF+DIL    + EEH+ HL  +L+TLREH LY NKKKC FA+S++EYL HII G  VEVDPEKI+SIA+W  P NVRE+ GF
Subjt:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

A0A5D3DYS4 Ty3/gypsy retrotransposon protein

2.7e-66

68.21

Show/hide

Query:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN
        +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQIRM + DIEKT FRTHEGHY FLVM FGLTNAPATFQS MN
Subjt:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN

Query:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
         +FRP+LRKFVLVFF+DIL    + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I  W  P NVRE  GF
Subjt:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

7.8e-31

38.59

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Query:  WRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLF-SIDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFV
        +R  +DY  LN +T+ D+  I  ++E+  KL   + F +IDL  G+HQI M    + KT F T  GHY +L M FGL NAPATFQ  MN + RP L K  
Subjt:  WRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLF-SIDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFV

Query:  LVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
        LV+ +DI+    SL+EHL+ L ++   L +  L +   KC+F K    +L H++    ++ +PEKI++I ++  P   +E+  F
Subjt:  LVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

P20825 Retrovirus-related Pol polyprotein from transposon 297

2.2e-33

40.76

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Query:  WRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLF-SIDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFV
        +R  +DY  LN +TIPD+  I  ++E+  KL +   F +IDL  G+HQI M E  I KT F T  GHY +L M FGL NAPATFQ  MN + RP L K  
Subjt:  WRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLF-SIDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFV

Query:  LVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
        LV+ +DI+    SL EHL  ++++ T L +  L +   KC+F K    +L HI+    ++ +P K+K+I  +  P   +E+  F
Subjt:  LVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

2.1e-28

40.51

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Query:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLF-SIDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN
        ++LV KK    +R CVDY  LN  TI D   +  I+ L  ++  A +F ++DL +GYHQI M   D  KT F T  G Y + VM FGL NAP+TF   M 
Subjt:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLF-SIDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN

Query:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
          FR    +FV V+ +DIL    S EEH KHL+ +L  L+   L V KKKCKFA    E+L + I  Q++     K  +I ++ +P  V++   F
Subjt:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

1.9e-29

39.13

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Query:  WRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLF-SIDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFV
        +R  VD+  LN VTIPD   I  I      L  A  F ++DL +G+HQI M E+DI KT F T  G Y FL + FGL NAPA FQ  ++ + R H+ K  
Subjt:  WRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLF-SIDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFV

Query:  LVFFNDILSLEE----HLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
         V+ +DI+   E    H K+L ++L +L +  L VN +K  F  ++VE+L +I+    ++ DP+K+++I+E   P +V+E+  F
Subjt:  LVFFNDILSLEE----HLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

Q99315 Transposon Ty3-G Gag-Pol polyprotein

2.1e-28

40.51

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Query:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLF-SIDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN
        ++LV KK    +R CVDY  LN  TI D   +  I+ L  ++  A +F ++DL +GYHQI M   D  KT F T  G Y + VM FGL NAP+TF   M 
Subjt:  MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLF-SIDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMN

Query:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
          FR    +FV V+ +DIL    S EEH KHL+ +L  L+   L V KKKCKFA    E+L + I  Q++     K  +I ++ +P  V++   F
Subjt:  VLFRPHLRKFVLVFFNDIL----SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

3.0e-09

37.68

Show/hide

Query:  LKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLW--HIILGQRVEVDPEKIKSIAEWLSPINVREVHGF
        + HL ++L    +H+ Y N+KKC F + ++ YL   HII G+ V  DP K++++  W  P N  E+ GF
Subjt:  LKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLW--HIILGQRVEVDPEKIKSIAEWLSPINVREVHGF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTACTAGTCAAAAAGAAATATAGGAGCTGGTGGCGCTTTTGTGTAGATTACATAGCACTGAATAATGTGACTATACCAGACAAAATTTCCATACTTCTCATTGAGGA
GTTATTCGACAAATTGAATGAAGCATCCTTGTTTTCCATTGATTTAAAAGCCGGTTATCACCAAATACGCATGAGTGAGAATGATATAGAGAAAACAACATTTCGAACAC
ATGAAGGACACTATATGTTCTTAGTTATGTCGTTTGGGCTAACTAATGCACCAGCCACATTTCAGTCCTCAATGAATGTGTTATTCCGGCCACACTTGAGGAAGTTTGTG
TTAGTCTTTTTTAACGACATACTGAGCCTAGAAGAACACTTAAAGCATTTAGAAATAATGTTAACAACATTAAGGGAGCACGAGCTCTATGTGAATAAAAAGAAATGTAA
GTTTGCAAAATCAAGAGTAGAGTACTTGTGGCACATAATTTTAGGGCAAAGAGTTGAAGTGGACCCCGAAAAGATCAAATCTATTGCAGAATGGCTAAGTCCCATTAATG
TTAGAGAGGTGCATGGATTTTTTTAG

mRNA sequence

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Protein sequence

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MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFSIDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFV
LVFFNDILSLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGFF

Cmc01g0020111 (gene) of Melon (Charmono) v1.1 genome