CuGenDBv2

Gene ID	Cmc01g0020301
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Genome location	CMiso1.1chr01:18453789..18454226
RNA-Seq Expression	Cmc01g0020301
Synteny	Cmc01g0020301
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032842.1 hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa]

6.9e-53

79.56

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Query:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE
        C++ICLY+DDMLIFGSNL VIN+VKS+L VNF MK +GEA+VILGIKI + +  ISLDQS YI KILKKYNYF+SKPACTPY SSVKLFKNT DSVN  E
Subjt:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE

Query:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH
        YAS+IGSLRY A CTRPDIAY VGLLCRFTSRPSLEH
Subjt:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH

KAA0058878.1 putative polyprotein [Cucumis melo var. makuwa]

1.3e-51

76.64

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Query:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE
        C++ICLY+DDML F SNL VIN+VKS+L VNF MK +GEA++ILGIKI ++K  ISLDQS+YI KILKKYNYF+SKPACTPY SSVKLFKNT D+VN  E
Subjt:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE

Query:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH
        Y S+IGSLRYVA CTRPDIAY VGLLCRFTSRP LEH
Subjt:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH

TYK00058.1 hypothetical protein E5676_scaffold596G00040 [Cucumis melo var. makuwa]

5.9e-52

77.37

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Query:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE
        C++ICLY+DDMLIFGSNL +IN+VKS+L  NF MK +GEA+VILGIKI +++  ISLDQS YI KILKKYNYFESKPACTPY SSVKLFKNT DSVN  E
Subjt:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE

Query:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH
        YAS+IGSLRY A CTRPDIAY +GLLCRFTSR SLEH
Subjt:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH

TYK06419.1 hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa]

5.0e-51

76.64

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Query:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE
        C++ICLY+DD+LIFGSNL VIN+VKS+L  NF MK + EA+VILGIKI ++K  ISLDQS YI KILKKYNYF+SKP CTPY SSVKLF+NT DSVN  E
Subjt:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE

Query:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH
        YAS+IGSLRY A CTRPDIAY VGLLCRFTSRPSLEH
Subjt:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH

TYK09543.1 hypothetical protein E5676_scaffold757G00240 [Cucumis melo var. makuwa]

1.7e-51

76.64

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Query:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE
        C++ICLY+DDMLIFGSNL VIN+VKS+L VNF MK + EA+VILGIKI ++K  ISLDQS YI+KILKKYNYFESKPACTPY SSVKLFKNT  SVN  E
Subjt:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE

Query:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH
        YAS+IGSLRY  YC RP+IAY VGL+CRFTSRPSL+H
Subjt:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SNZ1 Reverse transcriptase Ty1/copia-type domain-containing protein

3.4e-53

79.56

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Query:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE
        C++ICLY+DDMLIFGSNL VIN+VKS+L VNF MK +GEA+VILGIKI + +  ISLDQS YI KILKKYNYF+SKPACTPY SSVKLFKNT DSVN  E
Subjt:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE

Query:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH
        YAS+IGSLRY A CTRPDIAY VGLLCRFTSRPSLEH
Subjt:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH

A0A5D3BLQ7 Reverse transcriptase Ty1/copia-type domain-containing protein

2.8e-52

77.37

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Query:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE
        C++ICLY+DDMLIFGSNL +IN+VKS+L  NF MK +GEA+VILGIKI +++  ISLDQS YI KILKKYNYFESKPACTPY SSVKLFKNT DSVN  E
Subjt:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE

Query:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH
        YAS+IGSLRY A CTRPDIAY +GLLCRFTSR SLEH
Subjt:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH

A0A5D3C7T6 Reverse transcriptase Ty1/copia-type domain-containing protein

2.4e-51

76.64

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Query:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE
        C++ICLY+DD+LIFGSNL VIN+VKS+L  NF MK + EA+VILGIKI ++K  ISLDQS YI KILKKYNYF+SKP CTPY SSVKLF+NT DSVN  E
Subjt:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE

Query:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH
        YAS+IGSLRY A CTRPDIAY VGLLCRFTSRPSLEH
Subjt:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH

A0A5D3CCG4 Reverse transcriptase Ty1/copia-type domain-containing protein

8.3e-52

76.64

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Query:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE
        C++ICLY+DDMLIFGSNL VIN+VKS+L VNF MK + EA+VILGIKI ++K  ISLDQS YI+KILKKYNYFESKPACTPY SSVKLFKNT  SVN  E
Subjt:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE

Query:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH
        YAS+IGSLRY  YC RP+IAY VGL+CRFTSRPSL+H
Subjt:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH

A0A5D3DJH9 Putative polyprotein

6.3e-52

76.64

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Query:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE
        C++ICLY+DDML F SNL VIN+VKS+L VNF MK +GEA++ILGIKI ++K  ISLDQS+YI KILKKYNYF+SKPACTPY SSVKLFKNT D+VN  E
Subjt:  CMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFE

Query:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH
        Y S+IGSLRYVA CTRPDIAY VGLLCRFTSRP LEH
Subjt:  YASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

3.9e-14

33.83

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Query:  ICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFEYAS
        + LY+DD++I   ++  +NN K  L   F M  + E    +GI+I   + +I L QS Y++KIL K+N        TP  S +      SD   +    S
Subjt:  ICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFEYAS

Query:  VIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLE
        +IG L Y+  CTRPD+   V +L R++S+ + E
Subjt:  VIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-19

37.24

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Query:  MLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKI--RISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFK-------NT
        +++ LY+DDMLI G +  +I  +K  L  +F MK +G A  ILG+KI++ +   ++ L Q  YI ++L+++N   +KP  TP    +KL K         
Subjt:  MLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKI--RISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFK-------NT

Query:  SDSVNHFEYASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH
          ++    Y+S +GSL Y   CTRPDIA+ VG++ RF   P  EH
Subjt:  SDSVNHFEYASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH

P92519 Uncharacterized mitochondrial protein AtMg00810

6.2e-12

31.34

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Query:  MLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFEY
        M + LY+DD+L+ GS+  ++N +   L   F MK +G  +  LGI+I      + L Q+ Y  +IL      + KP  TP    +    +T+   +  ++
Subjt:  MLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFEY

Query:  ASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSL
         S++G+L+Y+   TRPDI+Y V ++C+    P+L
Subjt:  ASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSL

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

4.5e-10

30.77

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Query:  ALLYACMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNT-SD
        A L+ C+L+  Y+DD++I  +N   ++ +KS L   F ++ +G     LG++I +S   I++ Q  Y   +L +      KP+  P   SV    ++  D
Subjt:  ALLYACMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNT-SD

Query:  SVNHFEYASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH
         V+   Y  +IG L Y+   TR DI++ V  L +F+  P L H
Subjt:  SVNHFEYASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH

ATMG00810.1 DNA/RNA polymerases superfamily protein

4.4e-13

31.34

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Query:  MLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFEY
        M + LY+DD+L+ GS+  ++N +   L   F MK +G  +  LGI+I      + L Q+ Y  +IL      + KP  TP    +    +T+   +  ++
Subjt:  MLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVNHFEY

Query:  ASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSL
         S++G+L+Y+   TRPDI+Y V ++C+    P+L
Subjt:  ASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSL

Sequences

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CDS sequence

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ATGACTTATGCACTATTGTATGCTTGTATGCTTATATGTTTATATATAGATGACATGTTAATCTTTGGATCAAACTTACAAGTCATAAACAATGTAAAATCACTG
TTGTGTGTAAATTTTGGCATGAAATACATTGGAGAAGCTAATGTAATCCTGGGTATTAAGATCATTCAGTCTAAAATAAGAATTTCTTTGGATCAATCCTTTTAC
ATAAGGAAAATTCTAAAGAAATATAACTACTTTGAAAGTAAACCAGCTTGTACACCCTATGGTTCTAGTGTTAAGTTGTTCAAGAACACTAGTGACAGTGTTAAT
CATTTTGAGTATGCGAGCGTCATAGGTAGTCTAAGATATGTTGCCTATTGCACTAGGCCAGATATAGCTTATGTTGTAGGATTACTATGTAGGTTTACTAGTAGA
CCTAGCCTAGAACACTAG

mRNA sequence

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Protein sequence

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MTYALLYACMLICLYIDDMLIFGSNLQVINNVKSLLCVNFGMKYIGEANVILGIKIIQSKIRISLDQSFYIRKILKKYNYFESKPACTPYGSSVKLFKNTSDSVN
HFEYASVIGSLRYVAYCTRPDIAYVVGLLCRFTSRPSLEH

Cmc01g0020301 (gene) of Melon (Charmono) v1.1 genome