CuGenDBv2

Gene ID	Cmc01g0020471
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr01:18684014..18684910
RNA-Seq Expression	Cmc01g0020471
Synteny	Cmc01g0020471
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

1.6e-157

95.52

Show/hide

Query:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYG+CCRSPV  GEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL
        VRRKDLEF+VGDKVFLK+APMKGVLRFERRGKLSPRFVGPFEILERIG VAYRLALPPSLS VHDVFHVSMLRKYV DPSHVVDYEP ++
Subjt:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL

KAA0043401.1 pol protein [Cucumis melo var. makuwa]

9.6e-158

95.17

Show/hide

Query:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYG+CCRSPV  GEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL
        VRRKDLEF++GDKVFLK+APMKGVLRFERRGKLSPRFVGPFEILERIG VAYRLALPPSLSAVHDVFH+SMLRKYV DPSHVVDYEP ++
Subjt:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL

KAA0051368.1 pol protein [Cucumis melo var. makuwa]

2.1e-157

95.17

Show/hide

Query:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYG+CCRSPV  GEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL
        VRRKDLEF++GDKVFLK+APMKGVLRFERRGKLSPRFVGPFEILERIG VAYRLALPPSLS VHDVFHVSMLRKYV DPSHVVDYEP ++
Subjt:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL

KAA0064005.1 pol protein [Cucumis melo var. makuwa]

2.1e-157

95.17

Show/hide

Query:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGM PFEALYG+CCRSPV  GEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL
        VRRKDLEF++GDKVFLK+APMKGVLRFERRGKLSPRFVGPFEILERIG VAYRLALPPSLSAVHDVFHVSMLRKYV DPSHVVDYEP ++
Subjt:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL

KAA0066456.1 pol protein [Cucumis melo var. makuwa]

8.1e-157

94.83

Show/hide

Query:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYG+CCRSPV  GEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL
        VRRKDLEF+VGDKVFLK+APM+GV+RFERRGKLSPRFVGPFEILERIG VAYRLALPPSLS VHDVFHVSMLRKYV DPSHVVDYEP ++
Subjt:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TPA9 Pol protein

4.6e-158

95.17

Show/hide

Query:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYG+CCRSPV  GEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL
        VRRKDLEF++GDKVFLK+APMKGVLRFERRGKLSPRFVGPFEILERIG VAYRLALPPSLSAVHDVFH+SMLRKYV DPSHVVDYEP ++
Subjt:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL

A0A5A7U7V9 Reverse transcriptase

1.0e-157

95.17

Show/hide

Query:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYG+CCRSPV  GEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL
        VRRKDLEF++GDKVFLK+APMKGVLRFERRGKLSPRFVGPFEILERIG VAYRLALPPSLS VHDVFHVSMLRKYV DPSHVVDYEP ++
Subjt:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL

A0A5A7VDP3 Pol protein

1.0e-157

95.17

Show/hide

Query:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGM PFEALYG+CCRSPV  GEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL
        VRRKDLEF++GDKVFLK+APMKGVLRFERRGKLSPRFVGPFEILERIG VAYRLALPPSLSAVHDVFHVSMLRKYV DPSHVVDYEP ++
Subjt:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL

A0A5A7VJE2 Reverse transcriptase

3.9e-157

94.83

Show/hide

Query:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYG+CCRSPV  GEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL
        VRRKDLEF+VGDKVFLK+APM+GV+RFERRGKLSPRFVGPFEILERIG VAYRLALPPSLS VHDVFHVSMLRKYV DPSHVVDYEP ++
Subjt:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL

Q84KB0 Pol protein

7.9e-158

95.52

Show/hide

Query:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        +SMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
Subjt:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
        ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYG+CCRSPV  GEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYAD

Query:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL
        VRRKDLEF+VGDKVFLK+APMKGVLRFERRGKLSPRFVGPFEILERIG VAYRLALPPSLS VHDVFHVSMLRKYV DPSHVVDYEP ++
Subjt:  VRRKDLEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKL

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

2.5e-39

35.25

Show/hide

Query:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        LSMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQT
Subjt:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA
        ER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  Q ++  ++T   + K Y 
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA

Query:  DVRRKDL-EFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAV-HDVFHVSMLRKY
        D++ +++ EF  GD V +K     G L   +  KL+P F GPF +L++ G   Y L LP S+  +    FHVS L KY
Subjt:  DVRRKDL-EFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAV-HDVFHVSMLRKY

P0CT35 Transposon Tf2-2 polyprotein

2.5e-39

35.25

Show/hide

Query:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        LSMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQT
Subjt:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA
        ER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  Q ++  ++T   + K Y 
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA

Query:  DVRRKDL-EFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAV-HDVFHVSMLRKY
        D++ +++ EF  GD V +K     G L   +  KL+P F GPF +L++ G   Y L LP S+  +    FHVS L KY
Subjt:  DVRRKDL-EFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAV-HDVFHVSMLRKY

P0CT36 Transposon Tf2-3 polyprotein

2.5e-39

35.25

Show/hide

Query:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        LSMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQT
Subjt:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA
        ER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  Q ++  ++T   + K Y 
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA

Query:  DVRRKDL-EFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAV-HDVFHVSMLRKY
        D++ +++ EF  GD V +K     G L   +  KL+P F GPF +L++ G   Y L LP S+  +    FHVS L KY
Subjt:  DVRRKDL-EFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAV-HDVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein

2.5e-39

35.25

Show/hide

Query:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        LSMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQT
Subjt:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA
        ER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  Q ++  ++T   + K Y 
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA

Query:  DVRRKDL-EFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAV-HDVFHVSMLRKY
        D++ +++ EF  GD V +K     G L   +  KL+P F GPF +L++ G   Y L LP S+  +    FHVS L KY
Subjt:  DVRRKDL-EFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAV-HDVFHVSMLRKY

Q9UR07 Transposon Tf2-11 polyprotein

2.5e-39

35.25

Show/hide

Query:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
        LSMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQT
Subjt:  LSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT

Query:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA
        ER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  Q ++  ++T   + K Y 
Subjt:  ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYA

Query:  DVRRKDL-EFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAV-HDVFHVSMLRKY
        D++ +++ EF  GD V +K     G L   +  KL+P F GPF +L++ G   Y L LP S+  +    FHVS L KY
Subjt:  DVRRKDL-EFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAV-HDVFHVSMLRKY

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAAGTGGGAAAACTGTCCATGGATTTCATTACAGGACTGCCAAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCG
CACTTCGTCCCGGGTAAATCCACCTATACCGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGAT
AGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACT
GAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGTTGGGACTCCCACTTGCATTTGATGGAATTTGCTTATAATAAC
AGTTTTCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTACCGGGGTGAGGTAGGTGAGCAGAGATTGATGGGT
CCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGAAGATTAGATCACGTATGCATACCGCACAGAGTAGGCAGAAGAGTTATGCTGATGTTAGACGGAAGGAT
CTTGAGTTTGATGTGGGGGACAAGGTGTTCTTGAAGATAGCACCTATGAAAGGTGTCTTACGATTTGAAAGGAGAGGAAAGCTGAGTCCCCGTTTTGTTGGGCCA
TTTGAGATTCTGGAGCGGATTGGCCTTGTAGCGTATCGCTTGGCATTGCCACCATCACTCTCGGCAGTTCATGATGTGTTCCATGTTTCTATGTTGAGGAAGTAC
GTGTCAGACCCATCCCATGTAGTGGATTATGAGCCACAGAAATTGATGAAAACTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MEVGKLSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT
ERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRSPVYRGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKD
LEFDVGDKVFLKIAPMKGVLRFERRGKLSPRFVGPFEILERIGLVAYRLALPPSLSAVHDVFHVSMLRKYVSDPSHVVDYEPQKLMKT

Cmc01g0020471 (gene) of Melon (Charmono) v1.1 genome