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Cmc01g0020491 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0020491
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDNA-directed RNA polymerase I subunit RPA1-like
Genome locationCMiso1.1chr01:18710866..18713525
RNA-Seq ExpressionCmc01g0020491
SyntenyCmc01g0020491
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032757.1 hypothetical protein E6C27_scaffold853G001000 [Cucumis melo var. makuwa]1.5e-0973.58Show/hide
Query:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
        TRLIC+SFG TRLIC S  STRLIC S   TRLI VS GITRLIC  +GTTRL
Subjt:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
KAA0035923.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-0973.58Show/hide
Query:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
        TRLIC SFG TRLIC S  STRLIC S   TRLI VS GITRLIC  +GTTRL
Subjt:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
KAA0061219.1 hypothetical protein E6C27_scaffold455G00490 [Cucumis melo var. makuwa]2.0e-0973.58Show/hide
Query:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
        TRLIC SFG TRLIC S  STRLIC S   TRLI VS GITRLIC  +GTTRL
Subjt:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
KAA0063127.1 hypothetical protein E6C27_scaffold381G00010 [Cucumis melo var. makuwa]2.0e-0973.58Show/hide
Query:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
        TRLIC SFG TRLIC S  STRLIC S   TRLI VS GITRLIC  +GTTRL
Subjt:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
TYK01302.1 hypothetical protein E5676_scaffold827G00020 [Cucumis melo var. makuwa]2.0e-0973.58Show/hide
Query:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
        TRLIC SFG TRLIC S  STRLIC S   TRLI VS GITRLIC  +GTTRL
Subjt:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
TrEMBL top hitse value%identityAlignment
A0A5A7STX5 Uncharacterized protein7.2e-1073.58Show/hide
Query:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
        TRLIC+SFG TRLIC S  STRLIC S   TRLI VS GITRLIC  +GTTRL
Subjt:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
A0A5A7SZ70 Ty3-gypsy retrotransposon protein9.4e-1073.58Show/hide
Query:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
        TRLIC SFG TRLIC S  STRLIC S   TRLI VS GITRLIC  +GTTRL
Subjt:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
A0A5A7T3J6 Reverse transcriptase9.4e-1073.58Show/hide
Query:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
        TRLIC SFG TRLIC S  STRLIC S   TRLI VS GITRLIC  +GTTRL
Subjt:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
A0A5A7T9I8 Uncharacterized protein9.4e-1073.58Show/hide
Query:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
        TRLIC SFG TRLIC S  STRLIC S   TRLI VS GITRLIC  +GTTRL
Subjt:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
A0A5D3DVH5 Uncharacterized protein9.4e-1073.58Show/hide
Query:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
        TRLIC SFG TRLIC S  STRLIC S   TRLI VS GITRLIC  +GTTRL
Subjt:  TRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTGTATCATTCGAGACACTAGACTGATATGTGTATCCTTTGGGGGCACTAGATTGATATGTGTATCCTCCAGGAGCACTAGACTGATATGTAGATCCCACGAGAC
CACTAGACTGATATATGTATCGGACGGAATCACTAGACTGATATGTGGATCCCACGGGACCACGAGACTGTAA
mRNA sequenceShow/hide mRNA sequence
GTCAAACTCATTCTTCTCTATCTTTTCTTACGCCGCACAGCCCTCCTCTCCTTCAAACTCTCGCGTCGCTATTCACACACCCCGTCTTTTTGTTTTCCTTTTCTCCTCAA
CCAGCCGTCGGCAGCCGTAGCCCCACGCCTCCATTCGCTGCCGTGGTTCGTCTCTGCCAAGCATCACCGACCGCCTCTCATCTTCTTCTTCCTCCACCGTGAAACCCGTC
GCATCTCCTTTCGTTTGAAGCCAAGCCGCCACGTTCGTGTACCGTAGTTGAAGCCCTGTCGTCACACCACGTTCGTCCGTCGCGAATCAACCGAGTCGCTGCGCCTCGTT
CATTCGCCGTAAATCCAGCCGAGTCGCCCTTGCTTCTCCTCTCGTCTGCCATCGTTTGGCTCGATTTGTGTTCTGTCGCTTCTTGCCTCATCGTAAGTTTTGAGGTTGGT
TCGTTGGATCCTAGTTGATTAAGGAACGTAGCTAAATCTCAATCTTTATCTATAGGGTAGTGGACTTTGCAGACACGGTGTCCTATGGGATTACCCCATGTTGTGTATCA
TTCGAGACACTAGACTGATATGTGTATCCTTTGGGGGCACTAGATTGATATGTGTATCCTCCAGGAGCACTAGACTGATATGTAGATCCCACGAGACCACTAGACTGATA
TATGTATCGGACGGAATCACTAGACTGATATGTGGATCCCACGGGACCACGAGACTGTAAGGGTATTGCACGAGGCAGAACGGCAAGGGGCAAGAAGGATGCGTAAAGGC
CATACGAGGATGCCTAGTTTTATTGCTTCCGCTAATTAATTTTGTGTTTTCGTTTTAAGGATTTCTAAATTCAAGTTTTGGGTTAGGATATTTGTTTAATTGTTTTGTTT
GAACTTCATAAGTTATGTTTGAAACTTTTAAAATTGATTTGAAATAGGGCCCGTAGACGATTTTATTATATCTTGAGTTTTAATGAACTTTTGAATGGAGTTTTTGTTGA
ATTTTTATGATTGAATGTCGTGTCTTAGTAGTAGGTAGTGACCTCAACTTAGTCTGAAAAGTTGGGTCGTTACACAAACTTATAGGTTTGAGGAGTCGTGGGCGAAGGAA
ATCAACTTGAGGAATCGTCGTTCAACCTAAAAATCAGCCAGAAGAGTCATCGATAAAGGAAATCGACGGAGAAGGGTAGAGGGGTCTATCTGTTCGCTTGTGTGAGAAGA
AGATTGGAGACATGTGGGTTGCCGTTTGTGCTATTGAAAACCTTTGTGGCCGCCATTCGCGCAAGGTTGTTGCCAGAAAGAAGAATGGGTAGTGGTCATTCATGTAGGGT
TACTGTTGGGAAGAAGAATGGGTGGTTGTCGTTCGCCCGAGGTTGCCAGTGAAGGTTATGGTTGTCGGAGTTTGGCAGTCGTTGAAGTTGAGATTTTGGGTCGGCAAAGC
CACTACACCAAATTAGATTTTTAATAACATATTTTAATAACGTAGATTATATAATGTTATTAAAAAAAGGTGGGGGATTAATTAAAATAAAAAAAAACGGGTGGCATTAT
ATCTTGAAATCCCTAATTTAAACATTTGTGTGGCGCCCCTTCTCCCTTGATCATCTCCTTCATTGTGCGACTCCCCTTCTCATAAAAACCCCCTTTTCGTTCCAACTTTT
TCGTTCCAATCTCAGACGATAGACGATCTCATTTGTTCTCTAGTTACGTCGCGCGACGCTTCATCGATCTTATCTGTCATAATCTCCAGCTTTGTCGGGC
Protein sequenceShow/hide protein sequence
MLCIIRDTRLICVSFGGTRLICVSSRSTRLICRSHETTRLIYVSDGITRLICGSHGTTRL