| GenBank top hits | e value | %identity | Alignment |
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| GAU19483.1 hypothetical protein TSUD_77270 [Trifolium subterraneum] | 1.3e-47 | 49.72 | Show/hide |
Query: GTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDD
GT S K WH+RLGHP++KVL+ V+++C V + + F ++CQ GK H LPF S SHA P LV++D+WGP P+ ++ GF+YY+ FVDD
Subjt: GTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDD
Query: YNRYSWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
++R++WIYPLKQKS V+AF F +NQFNK IK D G EY + ++ GI R+SCPYTS QNGR ERKHR
Subjt: YNRYSWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
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| KYP50444.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] | 4.4e-48 | 53.89 | Show/hide |
Query: KTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQ
K WH++LGHP+SKVLN V+K CN + EF ++CQ GKAHNLPF S S A P +LV+SD+WGP P+ S GF+YY++F+DD++R++WIYPLKQ
Subjt: KTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQ
Query: KSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
KS +AF F V+NQFNK IK D G E+ + ++ GI R SCPYTS QNGR ERKHR
Subjt: KSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
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| MCH94186.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Trifolium medium] | 1.2e-48 | 50.84 | Show/hide |
Query: GTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDD
GT S K WH+RLGHP++KVL+ V+K+CN V + + F ++CQ GK H LPF S SHA P LV++D+WGP P+ ++ GF+YY+ FVDD
Subjt: GTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDD
Query: YNRYSWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
++R++WIYPLKQKS V+AF F +NQFNK IK D G EY + ++ GI R+SCPYTS QNGR ERKHR
Subjt: YNRYSWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
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| PNY02796.1 copia protein (gag-int-pol protein), partial [Trifolium pratense] | 2.6e-48 | 49.71 | Show/hide |
Query: NSCVAMP-KTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRY
++C M K WH++LGHP++KVL+ V+K+CN + +F ++CQ GK H LPF S SHA P +L+++D+WGP P+ S GF+YY+ F+DD++R+
Subjt: NSCVAMP-KTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRY
Query: SWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
+WIYPLKQKS + AF F V+NQFNK IK D G EY + ++ GI R+SCPYTS QNGR ERKHR
Subjt: SWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
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| TYJ96768.1 putative mitochondrial protein [Cucumis melo var. makuwa] | 2.6e-53 | 94.29 | Show/hide |
Query: SGGTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFV
S GTNLANSCVA+PKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEF DSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGP PVCSTD FRYYIMFV
Subjt: SGGTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFV
Query: DDYNR
DDY+R
Subjt: DDYNR
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A151S6M8 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.1e-48 | 53.89 | Show/hide |
Query: KTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQ
K WH++LGHP+SKVLN V+K CN + EF ++CQ GKAHNLPF S S A P +LV+SD+WGP P+ S GF+YY++F+DD++R++WIYPLKQ
Subjt: KTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQ
Query: KSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
KS +AF F V+NQFNK IK D G E+ + ++ GI R SCPYTS QNGR ERKHR
Subjt: KSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
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| A0A2K3NIC3 Copia protein (Gag-int-pol protein) (Fragment) | 1.2e-48 | 49.71 | Show/hide |
Query: NSCVAMP-KTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRY
++C M K WH++LGHP++KVL+ V+K+CN + +F ++CQ GK H LPF S SHA P +L+++D+WGP P+ S GF+YY+ F+DD++R+
Subjt: NSCVAMP-KTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRY
Query: SWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
+WIYPLKQKS + AF F V+NQFNK IK D G EY + ++ GI R+SCPYTS QNGR ERKHR
Subjt: SWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
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| A0A2Z6MBG6 Integrase catalytic domain-containing protein | 6.2e-48 | 49.72 | Show/hide |
Query: GTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDD
GT S K WH+RLGHP++KVL+ V+++C V + + F ++CQ GK H LPF S SHA P LV++D+WGP P+ ++ GF+YY+ FVDD
Subjt: GTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDD
Query: YNRYSWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
++R++WIYPLKQKS V+AF F +NQFNK IK D G EY + ++ GI R+SCPYTS QNGR ERKHR
Subjt: YNRYSWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
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| A0A392N2Z1 Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) | 5.6e-49 | 50.84 | Show/hide |
Query: GTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDD
GT S K WH+RLGHP++KVL+ V+K+CN V + + F ++CQ GK H LPF S SHA P LV++D+WGP P+ ++ GF+YY+ FVDD
Subjt: GTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDD
Query: YNRYSWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
++R++WIYPLKQKS V+AF F +NQFNK IK D G EY + ++ GI R+SCPYTS QNGR ERKHR
Subjt: YNRYSWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
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| A0A5D3BEZ6 Putative mitochondrial protein | 1.3e-53 | 94.29 | Show/hide |
Query: SGGTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFV
S GTNLANSCVA+PKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEF DSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGP PVCSTD FRYYIMFV
Subjt: SGGTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFV
Query: DDYNR
DDY+R
Subjt: DDYNR
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 4.9e-18 | 33.91 | Show/hide |
Query: VWHKRLGHPS-SKVLNSVIKN--CNFPVKDNFDV--EFFDSCQLGKAHNLPFP--KSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWI
+WH+R GH S K+L KN + + +N ++ E + C GK LPF K ++H P +V+SD+ GP+ + D Y+++FVD + Y
Subjt: VWHKRLGHPS-SKVLNSVIKN--CNFPVKDNFDV--EFFDSCQLGKAHNLPFP--KSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWI
Query: YPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEY--HKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
Y +K KS F FV + FN + DNG EY +++ Q C GIS L+ P+T NG ER R
Subjt: YPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEY--HKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.6e-24 | 32.8 | Show/hide |
Query: SSAFVLSGGTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFR
++A + G N A +++ +WHKR+GH S K L + K V+ D C GK H + F S +LVYSD+ GP+ + S G +
Subjt: SSAFVLSGGTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFR
Query: YYIMFVDDYNRYSWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEY--HKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
Y++ F+DD +R W+Y LK K + F F V+ + + +K SDNG EY + + CS+ GI + P T NG ER +R
Subjt: YYIMFVDDYNRYSWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEY--HKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 9.6e-14 | 25 | Show/hide |
Query: NLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDS-------CQLGKAHNLPFPKSQ----SHATAPFNLVYSDLWGPVPVCSTDGF
N + S P + H+ LGH + + + +K D+E+ ++ C +GK+ K + PF +++D++GPV
Subjt: NLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDS-------CQLGKAHNLPFPKSQ----SHATAPFNLVYSDLWGPVPVCSTDGF
Query: RYYIMFVDDYNRYSWIYPL--KQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEY--HKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
Y+I F D+ R+ W+YPL +++ + F + ++KNQFN + D G EY +H+ +N GI++ + S +G ER +R
Subjt: RYYIMFVDDYNRYSWIYPL--KQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEY--HKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 7.0e-33 | 43.37 | Show/hide |
Query: WHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFF--DSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQK
WH RLGHP+ +LNSVI N + V N +F C + K++ +PF +S ++T P +YSD+W P+ S D +RYY++FVD + RY+W+YPLKQK
Subjt: WHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFF--DSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQK
Query: SVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
S E F F ++N+F I F SDNG E+ + + S GIS S P+T NG ERKHR
Subjt: SVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.1e-33 | 41.48 | Show/hide |
Query: ANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPV-KDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNR
A+ C + WH RLGHPS +LNSVI N + PV + + C + K+H +PF S ++ P +YSD+W P+ S D +RYY++FVD + R
Subjt: ANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPV-KDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNR
Query: YSWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
Y+W+YPLKQKS + F F V+N+F I SDNG E+ + S GIS S P+T NG ERKHR
Subjt: YSWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR
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