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Cmc01g0022191 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0022191
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr01:21143632..21144096
RNA-Seq ExpressionCmc01g0022191
SyntenyCmc01g0022191
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0032259 - methylation (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041917.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]1.4e-7597.93Show/hide
Query:  MKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDKVVRRHGIPK
        MKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKY YFITLKHPFLTKQVAAEFIDKVVRRHGIPK
Subjt:  MKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDKVVRRHGIPK

Query:  SIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTERAWN
        SIISDRDKSFLSNFWKELLYTMD ILK STTFHPQTNGQTERAWN
Subjt:  SIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTERAWN

KAA0048288.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.1e-7186.75Show/hide
Query:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK
        MSGEL+WKGMK DIK+YVEQCEICQRNKYE TKP  VLQPLPI +RILEDWTMDFI GLPKAGGMNVIMVVVDRLSKYAYF+T+KHPF  KQVA EFIDK
Subjt:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK

Query:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER
        +VRRHGIPKSIISDRDK FLSNFWKEL Y MDTILKRST FHPQT+GQTER
Subjt:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER

KAA0057186.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]6.0e-7187.42Show/hide
Query:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK
        MSGEL+WKGMKADIK YVEQCEICQRNK EATKPA VLQPLPI +RILEDWT+DFI GLPKAGGMNVIMVVVDRLSKYAYF+T+KHPF  KQVA EFIDK
Subjt:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK

Query:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER
        +VRRHGIPKSIISDRDK FLSNFWKEL Y MDTILKRST FHPQT+GQTER
Subjt:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER

TYK03842.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-7086.75Show/hide
Query:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK
        MSGEL+WKGMK DIK YVEQCEICQRNK EATKPA VLQPLPI +RILEDWTMDFI GLPKAGGMNVIMVVVDRLSKYAYF+T+KHPF  KQVA EFIDK
Subjt:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK

Query:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER
        +VRRHGIPKSIISDRDK F+SNFWKEL Y MDTILKRST FHPQT+GQTER
Subjt:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER

TYK07972.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.1e-7186.75Show/hide
Query:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK
        MSGEL+WKGMK DIK+YVEQCEICQRNKYE TKP  VLQPLPI +RILEDWTMDFI GLPKAGGMNVIMVVVDRLSKYAYF+T+KHPF  KQVA EFIDK
Subjt:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK

Query:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER
        +VRRHGIPKSIISDRDK FLSNFWKEL Y MDTILKRST FHPQT+GQTER
Subjt:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER

TrEMBL top hitse value%identityAlignment
A0A5A7TJL6 Transposon Tf2-9 polyprotein6.7e-7697.93Show/hide
Query:  MKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDKVVRRHGIPK
        MKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKY YFITLKHPFLTKQVAAEFIDKVVRRHGIPK
Subjt:  MKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDKVVRRHGIPK

Query:  SIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTERAWN
        SIISDRDKSFLSNFWKELLYTMD ILK STTFHPQTNGQTERAWN
Subjt:  SIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTERAWN

A0A5A7TZ91 Transposon Ty3-G Gag-Pol polyprotein1.0e-7186.75Show/hide
Query:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK
        MSGEL+WKGMK DIK+YVEQCEICQRNKYE TKP  VLQPLPI +RILEDWTMDFI GLPKAGGMNVIMVVVDRLSKYAYF+T+KHPF  KQVA EFIDK
Subjt:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK

Query:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER
        +VRRHGIPKSIISDRDK FLSNFWKEL Y MDTILKRST FHPQT+GQTER
Subjt:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER

A0A5A7USP1 Transposon Ty3-G Gag-Pol polyprotein2.9e-7187.42Show/hide
Query:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK
        MSGEL+WKGMKADIK YVEQCEICQRNK EATKPA VLQPLPI +RILEDWT+DFI GLPKAGGMNVIMVVVDRLSKYAYF+T+KHPF  KQVA EFIDK
Subjt:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK

Query:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER
        +VRRHGIPKSIISDRDK FLSNFWKEL Y MDTILKRST FHPQT+GQTER
Subjt:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER

A0A5D3BYA1 Ty3/gypsy retrotransposon protein1.1e-7086.75Show/hide
Query:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK
        MSGEL+WKGMK DIK YVEQCEICQRNK EATKPA VLQPLPI +RILEDWTMDFI GLPKAGGMNVIMVVVDRLSKYAYF+T+KHPF  KQVA EFIDK
Subjt:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK

Query:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER
        +VRRHGIPKSIISDRDK F+SNFWKEL Y MDTILKRST FHPQT+GQTER
Subjt:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER

A0A5D3C9J2 Transposon Ty3-G Gag-Pol polyprotein1.0e-7186.75Show/hide
Query:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK
        MSGEL+WKGMK DIK+YVEQCEICQRNKYE TKP  VLQPLPI +RILEDWTMDFI GLPKAGGMNVIMVVVDRLSKYAYF+T+KHPF  KQVA EFIDK
Subjt:  MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDK

Query:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER
        +VRRHGIPKSIISDRDK FLSNFWKEL Y MDTILKRST FHPQT+GQTER
Subjt:  VVRRHGIPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.5e-2742.07Show/hide
Query:  WKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDKVVRRHG
        WKG++  I+ YV+ C  CQ NK    KP   LQP+P  ER  E  +MDFI  LP++ G N + VVVDR SK A  +        +Q A  F  +V+   G
Subjt:  WKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDKVVRRHG

Query:  IPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER
         PK II+D D  F S  WK+  +  + ++K S  + PQT+GQTER
Subjt:  IPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER

P0CT35 Transposon Tf2-2 polyprotein2.5e-2742.07Show/hide
Query:  WKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDKVVRRHG
        WKG++  I+ YV+ C  CQ NK    KP   LQP+P  ER  E  +MDFI  LP++ G N + VVVDR SK A  +        +Q A  F  +V+   G
Subjt:  WKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDKVVRRHG

Query:  IPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER
         PK II+D D  F S  WK+  +  + ++K S  + PQT+GQTER
Subjt:  IPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER

P0CT36 Transposon Tf2-3 polyprotein2.5e-2742.07Show/hide
Query:  WKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDKVVRRHG
        WKG++  I+ YV+ C  CQ NK    KP   LQP+P  ER  E  +MDFI  LP++ G N + VVVDR SK A  +        +Q A  F  +V+   G
Subjt:  WKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDKVVRRHG

Query:  IPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER
         PK II+D D  F S  WK+  +  + ++K S  + PQT+GQTER
Subjt:  IPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER

P0CT41 Transposon Tf2-12 polyprotein2.5e-2742.07Show/hide
Query:  WKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDKVVRRHG
        WKG++  I+ YV+ C  CQ NK    KP   LQP+P  ER  E  +MDFI  LP++ G N + VVVDR SK A  +        +Q A  F  +V+   G
Subjt:  WKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDKVVRRHG

Query:  IPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER
         PK II+D D  F S  WK+  +  + ++K S  + PQT+GQTER
Subjt:  IPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER

Q9UR07 Transposon Tf2-11 polyprotein2.5e-2742.07Show/hide
Query:  WKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDKVVRRHG
        WKG++  I+ YV+ C  CQ NK    KP   LQP+P  ER  E  +MDFI  LP++ G N + VVVDR SK A  +        +Q A  F  +V+   G
Subjt:  WKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDKVVRRHG

Query:  IPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER
         PK II+D D  F S  WK+  +  + ++K S  + PQT+GQTER
Subjt:  IPKSIISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTER

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGAGAGCTTTATTGGAAGGGAATGAAGGCCGACATTAAGAGCTATGTAGAGCAATGCGAGATATGTCAAAGAAATAAGTATGAAGCTACCAAGCCAGCAAGAGT
TCTTCAGCCACTACCCATACTGGAAAGAATTTTGGAAGATTGGACTATGGACTTCATAGGAGGACTTCCTAAAGCAGGGGGCATGAATGTGATTATGGTGGTGGTAGATC
GATTAAGCAAATATGCCTATTTCATCACCTTGAAACACCCATTCTTAACCAAGCAAGTAGCAGCGGAATTCATTGATAAGGTAGTAAGAAGGCATGGCATTCCTAAGTCA
ATCATTTCAGATAGAGACAAAAGTTTTCTTAGCAACTTTTGGAAGGAACTGTTATACACTATGGACACCATACTTAAAAGGAGCACGACTTTTCACCCACAAACAAACGG
ACAAACAGAAAGAGCATGGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGAGAGCTTTATTGGAAGGGAATGAAGGCCGACATTAAGAGCTATGTAGAGCAATGCGAGATATGTCAAAGAAATAAGTATGAAGCTACCAAGCCAGCAAGAGT
TCTTCAGCCACTACCCATACTGGAAAGAATTTTGGAAGATTGGACTATGGACTTCATAGGAGGACTTCCTAAAGCAGGGGGCATGAATGTGATTATGGTGGTGGTAGATC
GATTAAGCAAATATGCCTATTTCATCACCTTGAAACACCCATTCTTAACCAAGCAAGTAGCAGCGGAATTCATTGATAAGGTAGTAAGAAGGCATGGCATTCCTAAGTCA
ATCATTTCAGATAGAGACAAAAGTTTTCTTAGCAACTTTTGGAAGGAACTGTTATACACTATGGACACCATACTTAAAAGGAGCACGACTTTTCACCCACAAACAAACGG
ACAAACAGAAAGAGCATGGAACTGA
Protein sequenceShow/hide protein sequence
MSGELYWKGMKADIKSYVEQCEICQRNKYEATKPARVLQPLPILERILEDWTMDFIGGLPKAGGMNVIMVVVDRLSKYAYFITLKHPFLTKQVAAEFIDKVVRRHGIPKS
IISDRDKSFLSNFWKELLYTMDTILKRSTTFHPQTNGQTERAWN