CuGenDBv2

Gene ID	Cmc01g0022201
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	cryptochrome-1
Genome location	CMiso1.1chr01:21162652..21166203
RNA-Seq Expression	Cmc01g0022201
Synteny	Cmc01g0022201
Gene Ontology terms	GO:0006139 - nucleobase-containing compound metabolic process (biological process) GO:0006950 - response to stress (biological process) GO:0009785 - blue light signaling pathway (biological process) GO:0032922 - circadian regulation of gene expression (biological process) GO:0043153 - entrainment of circadian clock by photoperiod (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003904 - deoxyribodipyrimidine photo-lyase activity (molecular function) GO:0009882 - blue light photoreceptor activity (molecular function) GO:0071949 - FAD binding (molecular function)
InterPro domains	IPR002081 - Cryptochrome/DNA photolyase class 1 IPR036155 - Cryptochrome/photolyase, N-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7024545.1 Cryptochrome-1 [Cucurbita argyrosperma subsp. argyrosperma]

8.2e-16

68.85

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Query:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVSA---QNKAKQRTRTLE
        LL E WDVKDANGNPF TFAGFWERCLSMPC+P+APLLPPKRI+S     +  +QR R+++
Subjt:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVSA---QNKAKQRTRTLE

XP_008466232.1 PREDICTED: cryptochrome-1 isoform X1 [Cucumis melo]

1.1e-15

88.89

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Query:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS
        LL E WDVKDANGNPF TFAGFWERCLSMPC+P+APLLPPKRIVS
Subjt:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS

XP_008466234.1 PREDICTED: cryptochrome-1 isoform X3 [Cucumis melo]

1.1e-15

88.89

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Query:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS
        LL E WDVKDANGNPF TFAGFWERCLSMPC+P+APLLPPKRIVS
Subjt:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS

XP_022975880.1 cryptochrome-1 [Cucurbita maxima]

1.1e-15

71.93

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Query:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVSAQNKAKQRTRTL
        LL E WDVKDANGNPF TFAGFWERCLSMPC+P+APLLPPKRI+S     + +  TL
Subjt:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVSAQNKAKQRTRTL

XP_038897474.1 cryptochrome-1 isoform X3 [Benincasa hispida]

1.4e-15

86.67

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Query:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS
        LL E WDVKDANGNPF TFAGFWERCLSMPC+P+APLLPPKRI+S
Subjt:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LDY1 Photolyase/cryptochrome alpha/beta domain-containing protein

6.8e-16

86.67

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Query:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS
        LL E WDVKDANGNPF TFAGFWERCLSMPC+P+APLLPPKRI+S
Subjt:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS

A0A1S3CQR4 cryptochrome-1 isoform X3

5.2e-16

88.89

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Query:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS
        LL E WDVKDANGNPF TFAGFWERCLSMPC+P+APLLPPKRIVS
Subjt:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS

A0A1S3CS50 cryptochrome-1 isoform X1

5.2e-16

88.89

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Query:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS
        LL E WDVKDANGNPF TFAGFWERCLSMPC+P+APLLPPKRIVS
Subjt:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS

A0A5D3E5Y8 Cryptochrome-1 isoform X1

5.2e-16

88.89

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Query:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS
        LL E WDVKDANGNPF TFAGFWERCLSMPC+P+APLLPPKRIVS
Subjt:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS

A0A6J1IHZ1 cryptochrome-1

5.2e-16

71.93

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Query:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVSAQNKAKQRTRTL
        LL E WDVKDANGNPF TFAGFWERCLSMPC+P+APLLPPKRI+S     + +  TL
Subjt:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVSAQNKAKQRTRTL

SwissProt top hits

e value

%identity

Alignment

Q43125 Cryptochrome-1

9.8e-12

64.44

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Query:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS
        LL E W+V D  G PF+ FA FWERCLSMP +P++PLLPPK+I+S
Subjt:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS

Arabidopsis top hits

e value

%identity

Alignment

AT4G08920.1 cryptochrome 1

7.0e-13

64.44

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Query:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS
        LL E W+V D  G PF+ FA FWERCLSMP +P++PLLPPK+I+S
Subjt:  LLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVS

Sequences

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CDS sequence

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ATGGGTGAAGGAGGTTTACTGGAGGAACTGTGGGATGTTAAGGATGCCAATGGCAATCCGTTTGCTACCTTTGCTGGTTTCTGGGAGAGATGTCTTAGCATGCCTTGTAA
TCCAAAAGCACCACTACTACCACCTAAGAGAATAGTTTCAGCTCAAAATAAGGCCAAGCAGAGAACCCGAACCTTGGAGATTCAGAACCTAAACCACTCATCCTTTTGTT
CTGCTTTATTACAAACTTAA

mRNA sequence

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TTTTTTTCATCTTCTTTTTCCTCACATCTAAACGGTTGGCGTTGCCTTCTCCATCTTTTCTTCTTGTCGTCGCGCCGTCAATCGTAGCTCGTCTGTCGGCCGTAGCGTCT
AGCCACCGCCGCCGTTCTCGTCGTCCCTGCAGCTTCAGATCCTTCATCGCTCATTCGGGATCATGGGTGAAGGAGGTTTACTGGAGGAACTGTGGGATGTTAAGGATGCC
AATGGCAATCCGTTTGCTACCTTTGCTGGTTTCTGGGAGAGATGTCTTAGCATGCCTTGTAATCCAAAAGCACCACTACTACCACCTAAGAGAATAGTTTCAGCTCAAAA
TAAGGCCAAGCAGAGAACCCGAACCTTGGAGATTCAGAACCTAAACCACTCATCCTTTTGTTCTGCTTTATTACAAACTTAATGTGGGCAGATATTGTGAATGGTTCACG
TTATGTTTCATTGTATACTTTCATGAGTACCCTTCATTCTTGTTCTTTTACAAGGAAATGGACCTTGTGTCTAAATATGGTCTGCAACGTGGGACTTTGAAGGGTGAATT
ATTTATAATTTTATCAGAGCAAGGAAACAATGGTATGTAACAATGTTGAGACAAATGTGGATTACTTCACTCTCATTATTATTATAATTGTTGAAAAGTTGTGCACCAAA
GTTCAAACTACTATATTAATCCCAAGTTGTAATGAGGTGCTAGGCCTTTAATTCTATGCTTTCTACAAAGATTTGAATGTACAAATGCAATTTGTTTGATTATTTAATTT
TATGAGTTGAAAATTTTGATATTTTAATTGTCTTGATACTGTATAAATACAATTTATTTGATTATTTTTTATTTGGGCTCAAAATTTTAGGTTACAAAAATAAAATAAAA
GTAATGATGGAATGTTTTTTTTAAAATAATCAAACTCTCGATGTCGTATGTAGCGTTGGGAGTTACATACGATCTCCCGATGGTGCATTTCTTGCCGTCAAGAAGGCTTC
TTCAATGCATTTCGTCCAACCACGATCTT

Protein sequence

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MGEGGLLEELWDVKDANGNPFATFAGFWERCLSMPCNPKAPLLPPKRIVSAQNKAKQRTRTLEIQNLNHSSFCSALLQT

Cmc01g0022201 (gene) of Melon (Charmono) v1.1 genome