CuGenDBv2

Gene ID	Cmc01g0022341
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr01:21536372..21537462
RNA-Seq Expression	Cmc01g0022341
Synteny	Cmc01g0022341
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0031444.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.8e-150

79.01

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNMARSMLK KK+ KE  AQ VEC VYLSNRSPTRSLW KTPQQAWTGR PSI HLRVF CMAY HIPDQK SKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY
        KYVFVGYDASSKGYKLYNPVTKK IVSRDVVFDEEASWNWNDEP+DYKF  F D+HDEPSDIAS   PPTSPITPQQSTSSSS SSSEGPR +RSLQ+IY
Subjt:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY

Query:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
        DETEELSQ+                                   K+ KK+DTWE STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
Subjt:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID

Query:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK
        YDEVFAPVARLETIRLLI + AQNNWKIFQMDVK  F NGYL+EEVYLEQ  GY VKGQEDK
Subjt:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK

KAA0060896.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.8e-150

79.01

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNMARSMLK KK+ KE  AQ VEC VYLSNRSPTRSLW KTPQQAWTGR PSI HLRVF CMAY HIPDQK SKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY
        KYVFVGYDASSKGYKLYNPVTKK IVSRDVVFDEEASWNWNDEP+DYKF  F D+HDEPSDIAS   PPTSPITPQQSTSSSS SSSEGPR +RSLQ+IY
Subjt:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY

Query:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
        DETEELSQ+                                   K+ KK+DTWE STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
Subjt:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID

Query:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK
        YDEVFAPVARLETIRLLI + AQNNWKIFQMDVK  F NGYL+EEVYLEQ  GY VKGQEDK
Subjt:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK

KAA0062308.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.8e-150

79.01

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNMARSMLK KK+ KE  AQ VEC VYLSNRSPTRSLW KTPQQAWTGR PSI HLRVF CMAY HIPDQK SKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY
        KYVFVGYDASSKGYKLYNPVTKK IVSRDVVFDEEASWNWNDEP+DYKF  F D+HDEPSDIAS   PPTSPITPQQSTSSSS SSSEGPR +RSLQ+IY
Subjt:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY

Query:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
        DETEELSQ+                                   K+ KK+DTWE STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
Subjt:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID

Query:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK
        YDEVFAPVARLETIRLLI + AQNNWKIFQMDVK  F NGYL+EEVYLEQ  GY VKGQEDK
Subjt:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK

TYK03241.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.8e-150

79.01

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNMARSMLK KK+ KE  AQ VEC VYLSNRSPTRSLW KTPQQAWTGR PSI HLRVF CMAY HIPDQK SKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY
        KYVFVGYDASSKGYKLYNPVTKK IVSRDVVFDEEASWNWNDEP+DYKF  F D+HDEPSDIAS   PPTSPITPQQSTSSSS SSSEGPR +RSLQ+IY
Subjt:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY

Query:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
        DETEELSQ+                                   K+ KK+DTWE STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
Subjt:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID

Query:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK
        YDEVFAPVARLETIRLLI + AQNNWKIFQMDVK  F NGYL+EEVYLEQ  GY VKGQEDK
Subjt:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK

TYK12247.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.8e-150

79.01

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNMARSMLK KK+ KE  AQ VEC VYLSNRSPTRSLW KTPQQAWTGR PSI HLRVF CMAY HIPDQK SKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY
        KYVFVGYDASSKGYKLYNPVTKK IVSRDVVFDEEASWNWNDEP+DYKF  F D+HDEPSDIAS   PPTSPITPQQSTSSSS SSSEGPR +RSLQ+IY
Subjt:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY

Query:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
        DETEELSQ+                                   K+ KK+DTWE STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
Subjt:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID

Query:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK
        YDEVFAPVARLETIRLLI + AQNNWKIFQMDVK  F NGYL+EEVYLEQ  GY VKGQEDK
Subjt:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SJX6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-150

79.01

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNMARSMLK KK+ KE  AQ VEC VYLSNRSPTRSLW KTPQQAWTGR PSI HLRVF CMAY HIPDQK SKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY
        KYVFVGYDASSKGYKLYNPVTKK IVSRDVVFDEEASWNWNDEP+DYKF  F D+HDEPSDIAS   PPTSPITPQQSTSSSS SSSEGPR +RSLQ+IY
Subjt:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY

Query:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
        DETEELSQ+                                   K+ KK+DTWE STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
Subjt:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID

Query:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK
        YDEVFAPVARLETIRLLI + AQNNWKIFQMDVK  F NGYL+EEVYLEQ  GY VKGQEDK
Subjt:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK

A0A5A7V308 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-150

79.01

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNMARSMLK KK+ KE  AQ VEC VYLSNRSPTRSLW KTPQQAWTGR PSI HLRVF CMAY HIPDQK SKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY
        KYVFVGYDASSKGYKLYNPVTKK IVSRDVVFDEEASWNWNDEP+DYKF  F D+HDEPSDIAS   PPTSPITPQQSTSSSS SSSEGPR +RSLQ+IY
Subjt:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY

Query:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
        DETEELSQ+                                   K+ KK+DTWE STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
Subjt:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID

Query:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK
        YDEVFAPVARLETIRLLI + AQNNWKIFQMDVK  F NGYL+EEVYLEQ  GY VKGQEDK
Subjt:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK

A0A5A7V3X9 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-150

79.01

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNMARSMLK KK+ KE  AQ VEC VYLSNRSPTRSLW KTPQQAWTGR PSI HLRVF CMAY HIPDQK SKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY
        KYVFVGYDASSKGYKLYNPVTKK IVSRDVVFDEEASWNWNDEP+DYKF  F D+HDEPSDIAS   PPTSPITPQQSTSSSS SSSEGPR +RSLQ+IY
Subjt:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY

Query:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
        DETEELSQ+                                   K+ KK+DTWE STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
Subjt:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID

Query:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK
        YDEVFAPVARLETIRLLI + AQNNWKIFQMDVK  F NGYL+EEVYLEQ  GY VKGQEDK
Subjt:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK

A0A5D3CJX7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-150

79.01

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNMARSMLK KK+ KE  AQ VEC VYLSNRSPTRSLW KTPQQAWTGR PSI HLRVF CMAY HIPDQK SKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY
        KYVFVGYDASSKGYKLYNPVTKK IVSRDVVFDEEASWNWNDEP+DYKF  F D+HDEPSDIAS   PPTSPITPQQSTSSSS SSSEGPR +RSLQ+IY
Subjt:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY

Query:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
        DETEELSQ+                                   K+ KK+DTWE STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
Subjt:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID

Query:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK
        YDEVFAPVARLETIRLLI + AQNNWKIFQMDVK  F NGYL+EEVYLEQ  GY VKGQEDK
Subjt:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK

A0A5D3DYS0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-150

79.01

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE
        MTVPFTPQQNGVVERKNRTILNMARSMLK KK+ KE  AQ VEC VYLSNRSPTRSLW KTPQQAWTGR PSI HLRVF CMAY HIPDQK SKLDDKSE
Subjt:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSE

Query:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY
        KYVFVGYDASSKGYKLYNPVTKK IVSRDVVFDEEASWNWNDEP+DYKF  F D+HDEPSDIAS   PPTSPITPQQSTSSSS SSSEGPR +RSLQ+IY
Subjt:  KYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIY

Query:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
        DETEELSQ+                                   K+ KK+DTWE STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID
Subjt:  DETEELSQN-----------------------------------KSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGID

Query:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK
        YDEVFAPVARLETIRLLI + AQNNWKIFQMDVK  F NGYL+EEVYLEQ  GY VKGQEDK
Subjt:  YDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQEDK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

3.9e-38

31.43

Show/hide

Query:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSL--WKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDK
        +TVP TPQ NGV ER  RTI   AR+M+   KL K    + V    YL NR P+R+L    KTP + W  + P + HLRVF    Y HI + K  K DDK
Subjt:  MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSL--WKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDK

Query:  SEKYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDE-------------------EASWNWN--------------DEPKDYKFFHFCDDHDE------P
        S K +FVGY+ +  G+KL++ V +K IV+RDVV DE                   + S N N              +E K+     F  D  E      P
Subjt:  SEKYVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDE-------------------EASWNWN--------------DEPKDYKFFHFCDDHDE------P

Query:  SD---IASPSTPPTSPITP----------------------------QQSTSSSSESSSEGPRDIRSLQEI----------------------------Y
        +D   I     P  S                                 +S  S + + S        L+EI                            Y
Subjt:  SD---IASPSTPPTSPITP----------------------------QQSTSSSSESSSEGPRDIRSLQEI----------------------------Y

Query:  DETEELSQNK-------------------------------------SHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKG
        +E E+ S NK                                     +HK ++TW  +  P  K  V  +WVF +K NE G   RYKARLVA+G++Q+  
Subjt:  DETEELSQNK-------------------------------------SHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKG

Query:  IDYDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSG
        IDY+E FAPVAR+ + R ++++V Q N K+ QMDVK  F NG LKEE+Y+    G
Subjt:  IDYDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSG

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.8e-52

34.9

Show/hide

Query:  TVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSEK
        TVP TPQ NGV ER NRTI+   RSML+  KL K    + V+   YL NRSP+  L  + P++ WT +  S +HL+VF C A+ H+P ++ +KLDDKS  
Subjt:  TVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSEK

Query:  YVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESS---------------
         +F+GY     GY+L++PV KK I SRDVVF E       D  +  K      +   P+ +  PST   +P + + +T   SE                 
Subjt:  YVFVGYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESS---------------

Query:  --------------------SEGP------------------RDIRSLQEIYDETEE-------LSQNKSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRN
                            SE P                  R+  SL+E+    E+         + +S +K+ T++   LP GK+ +  KWVFK+K++
Subjt:  --------------------SEGP------------------RDIRSLQEIYDETEE-------LSQNKSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRN

Query:  EKGEVERYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQE
           ++ RYKARLV KG+ Q+KGID+DE+F+PV ++ +IR ++++ A  + ++ Q+DVK  F +G L+EE+Y+EQ  G+ V G++
Subjt:  EKGEVERYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQE

P92520 Uncharacterized mitochondrial protein AtMg00820

2.0e-10

40.22

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Query:  QEIYDETEELSQNKSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLITIVAQ
        Q + +E + LS+NK      TW     P  +  +G KWVFK K +  G ++R KARLVAKG+ Q +GI + E ++PV R  TIR ++ +  Q
Subjt:  QEIYDETEELSQNKSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLITIVAQ

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

7.1e-24

25.68

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Query:  PFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSEKYV
        P TP+ NG+ ERK+R I+    ++L    + K          VYL NR PT  L  ++P Q   G +P+   LRVF C  Y  +      KLDDKS + V
Subjt:  PFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSEKYV

Query:  FVGYDASSKGYKLYNPVTKKAIVSRDVVFDE--------------------EASWNWNDE---PKDYKFF---HFCDDHDEPSDIASPSTP---------
        F+GY  +   Y   +  T +  +SR V FDE                    E+S  W+     P            D H   +  +SPS P         
Subjt:  FVGYDASSKGYKLYNPVTKKAIVSRDVVFDE--------------------EASWNWNDE---PKDYKFF---HFCDDHDEPSDIASPSTP---------

Query:  ---------------PTSP-----------------------------------------ITPQQS--------TSSSSESSSEGPRDI-----------
                       PT+P                                          TP QS        TS+SS S+S  P  I           
Subjt:  ---------------PTSP-----------------------------------------ITPQQS--------TSSSSESSSEGPRDI-----------

Query:  ------------------------------------------RSLQEIYDE---TEELSQNKSHKKSDTWEF-STLPNGKKAVGVKWVFKIKRNEKGEVE
                                                   ++Q + DE       S+  +   + TW+     P+    VG +W+F  K N  G + 
Subjt:  ------------------------------------------RSLQEIYDE---TEELSQNKSHKKSDTWEF-STLPNGKKAVGVKWVFKIKRNEKGEVE

Query:  RYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVK
        RYKARLVAKGY+QR G+DY E F+PV +  +IR+++ +    +W I Q+DV   F  G L ++VY+ Q  G+  K
Subjt:  RYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

3.5e-23

24.43

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Query:  PFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSEKYV
        P TP+ NG+ ERK+R I+ M  ++L    + K          VYL NR PT  L  ++P Q   G+ P+   L+VF C  Y  +      KL+DKS++  
Subjt:  PFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSEKYV

Query:  FVGYDASSKGYKLYNPVTKKAIVSRDVVFDE--------------------EASWNW-------------------------------------------
        F+GY  +   Y   +  T +   SR V FDE                    +++ NW                                           
Subjt:  FVGYDASSKGYKLYNPVTKKAIVSRDVVFDE--------------------EASWNW-------------------------------------------

Query:  --------------------NDEPKDYKFFHFCDDHDEPSDIAS------------------PSTPPTSPITPQQSTS-----SSSESSSEGP-------
                            ++ P+     H   + +  S I +                  P +P +SP  P  STS     S S SS+  P       
Subjt:  --------------------NDEPKDYKFFHFCDDHDEPSDIAS------------------PSTPPTSPITPQQSTS-----SSSESSSEGP-------

Query:  -----------------------RDIRSLQEIYDETEELSQNKSHK------KSDTWE------------------FSTLPNGKKAVGVKWVFKIKRNEK
                                 IR   + Y     L+ N   +      K D W                       P     VG +W+F  K N  
Subjt:  -----------------------RDIRSLQEIYDETEELSQNKSHK------KSDTWE------------------FSTLPNGKKAVGVKWVFKIKRNEK

Query:  GEVERYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQED
        G + RYKARLVAKGY+QR G+DY E F+PV +  +IR+++ +    +W I Q+DV   F  G L +EVY+ Q  G+  K + D
Subjt:  GEVERYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQLSGYFVKGQED

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

7.8e-26

51.46

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Query:  TWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQL
        TWE  TLP  KK +G KWV+KIK N  G +ERYKARLVAKGY+Q++GID+ E F+PV +L +++L++ I A  N+ + Q+D+   F NG L EE+Y++  
Subjt:  TWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQL

Query:  SGY
         GY
Subjt:  SGY

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)

1.4e-11

40.22

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Query:  QEIYDETEELSQNKSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLITIVAQ
        Q + +E + LS+NK      TW     P  +  +G KWVFK K +  G ++R KARLVAKG+ Q +GI + E ++PV R  TIR ++ +  Q
Subjt:  QEIYDETEELSQNKSHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLITIVAQ

Sequences

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CDS sequence

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ATGACAGTTCCATTTACTCCTCAACAAAATGGTGTAGTTGAGAGGAAGAACCGAACAATACTTAACATGGCTCGAAGCATGTTGAAGAGCAAGAAATTGCTAAAA
GAAGTTTCTGCACAAGTTGTTGAGTGTGTAGTATACTTGTCAAATCGTTCCCCAACTAGAAGCTTATGGAAGAAAACTCCTCAACAAGCATGGACAGGAAGAAAC
CCATCCATTGCTCATTTGAGAGTATTCAGATGCATGGCTTATACACATATACCTGATCAAAAGCATAGTAAGCTTGATGATAAAAGTGAGAAATATGTTTTTGTT
GGCTATGATGCAAGCTCAAAAGGCTACAAGCTTTATAATCCTGTTACAAAGAAGGCGATTGTAAGTAGAGATGTTGTGTTTGATGAAGAAGCATCATGGAATTGG
AATGATGAACCAAAAGACTACAAATTTTTTCATTTTTGCGACGATCATGATGAGCCTAGTGACATTGCTTCTCCATCAACACCACCAACATCGCCAATCACACCA
CAACAAAGCACATCTTCATCATCTGAAAGTTCAAGTGAAGGGCCTCGTGACATAAGAAGCTTACAAGAAATATATGATGAAACTGAAGAGTTAAGTCAAAATAAA
AGCCATAAAAAAAGTGATACGTGGGAATTTTCTACTCTTCCAAATGGAAAGAAAGCAGTAGGTGTTAAATGGGTGTTCAAGATAAAAAGAAATGAAAAGGGAGAA
GTGGAGAGATACAAAGCAAGATTAGTTGCAAAAGGATATTCTCAAAGAAAAGGCATTGATTATGATGAAGTATTTGCTCCTGTTGCTCGTTTGGAAACCATAAGG
TTATTAATTACTATTGTTGCTCAAAATAATTGGAAGATCTTTCAAATGGATGTCAAATTGACATTTTGGAATGGATATCTTAAAGAAGAAGTCTACTTAGAACAA
CTTTCTGGTTATTTTGTGAAAGGCCAAGAGGATAAAGGTTAA

mRNA sequence

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Protein sequence

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MTVPFTPQQNGVVERKNRTILNMARSMLKSKKLLKEVSAQVVECVVYLSNRSPTRSLWKKTPQQAWTGRNPSIAHLRVFRCMAYTHIPDQKHSKLDDKSEKYVFV
GYDASSKGYKLYNPVTKKAIVSRDVVFDEEASWNWNDEPKDYKFFHFCDDHDEPSDIASPSTPPTSPITPQQSTSSSSESSSEGPRDIRSLQEIYDETEELSQNK
SHKKSDTWEFSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLITIVAQNNWKIFQMDVKLTFWNGYLKEEVYLEQ
LSGYFVKGQEDKG

Cmc01g0022341 (gene) of Melon (Charmono) v1.1 genome