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Cmc01g0023611 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0023611
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationCMiso1.1chr01:23539585..23540037
RNA-Seq ExpressionCmc01g0023611
SyntenyCmc01g0023611
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037114.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-6281.21Show/hide
Query:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MPFGLTNAPAAFM+LMN+VFH +LDQFVIVFIDDILVYS SKEKH EHLRI LQTL  RELYAKFSKCEFWLD +V L H+VS EGICVDP+K +A DK 
Subjt:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDAC
        ERPT IT+I+SFLGL+ YY + VEGFSKLALPLTNLTRKNVKFEWTDAC
Subjt:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDAC

KAA0042193.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.9e-7697.86Show/hide
Query:  AFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR
        AFMNLM+QVFHPHLDQFVIVFIDDILVYSGSKEKH EHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR
Subjt:  AFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR

Query:  SFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        SFLGL GYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
Subjt:  SFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE

KAA0047618.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.9e-6481.33Show/hide
Query:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        M FGLTNAP AFM+LMN VFHP+LDQFVI+FIDDILVYS SKEKHAEHLRI  QTLR RELYAKFSKCEFWLD +++L HVVS EGICVDP+K +AV+KW
Subjt:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        ERPT I +IRSFL LA YY RFVEGFSKLAL LTNLT+KNVKFEWTDACE
Subjt:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE

TYK13961.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-6281.21Show/hide
Query:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MPFGLTNAPAAFM+LMN+VFH +LDQFVIVFIDDILVYS SKEKH EHLRI LQTL  RELYAKFSKCEFWLD +V L H+VS EGICVDP+K +A DK 
Subjt:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDAC
        ERPT IT+I+SFLGL+ YY + VEGFSKLALPLTNLTRKNVKFEWTDAC
Subjt:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDAC

TYK26763.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.0e-7597.86Show/hide
Query:  AFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR
        AFMNLM+QVFHPHLDQFVIVFIDDILVYSGSKEKH EHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR
Subjt:  AFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR

Query:  SFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        SFLGL GYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
Subjt:  SFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE

TrEMBL top hitse value%identityAlignment
A0A5A7T0V4 Putative DNA/RNA polymerases superfamily protein8.3e-6381.21Show/hide
Query:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MPFGLTNAPAAFM+LMN+VFH +LDQFVIVFIDDILVYS SKEKH EHLRI LQTL  RELYAKFSKCEFWLD +V L H+VS EGICVDP+K +A DK 
Subjt:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDAC
        ERPT IT+I+SFLGL+ YY + VEGFSKLALPLTNLTRKNVKFEWTDAC
Subjt:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDAC

A0A5A7TG44 DNA/RNA polymerases superfamily protein3.8e-7697.86Show/hide
Query:  AFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR
        AFMNLM+QVFHPHLDQFVIVFIDDILVYSGSKEKH EHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR
Subjt:  AFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR

Query:  SFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        SFLGL GYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
Subjt:  SFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE

A0A5A7TXH8 DNA/RNA polymerases superfamily protein3.4e-6481.33Show/hide
Query:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        M FGLTNAP AFM+LMN VFHP+LDQFVI+FIDDILVYS SKEKHAEHLRI  QTLR RELYAKFSKCEFWLD +++L HVVS EGICVDP+K +AV+KW
Subjt:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        ERPT I +IRSFL LA YY RFVEGFSKLAL LTNLT+KNVKFEWTDACE
Subjt:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE

A0A5D3CQ91 Putative DNA/RNA polymerases superfamily protein8.3e-6381.21Show/hide
Query:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MPFGLTNAPAAFM+LMN+VFH +LDQFVIVFIDDILVYS SKEKH EHLRI LQTL  RELYAKFSKCEFWLD +V L H+VS EGICVDP+K +A DK 
Subjt:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDAC
        ERPT IT+I+SFLGL+ YY + VEGFSKLALPLTNLTRKNVKFEWTDAC
Subjt:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDAC

A0A5D3DT34 DNA/RNA polymerases superfamily protein5.0e-7697.86Show/hide
Query:  AFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR
        AFMNLM+QVFHPHLDQFVIVFIDDILVYSGSKEKH EHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR
Subjt:  AFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIR

Query:  SFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
        SFLGL GYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE
Subjt:  SFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.7e-2839.46Show/hide
Query:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MPFGL NAPA F   MN +  P L++  +V++DDI+V+S S ++H + L +  + L    L  +  KCEF      FL HV++ +GI  +P K +A+ K+
Subjt:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTD
          PT   +I++FLGL GYY +F+  F+ +A P+T   +KN+K + T+
Subjt:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTD

P0CT34 Transposon Tf2-1 polyprotein4.4e-2132.19Show/hide
Query:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MP+G++ APA F   +N +     +  V+ ++DDIL++S S+ +H +H++  LQ L++  L    +KCEF    + F+ + +S +G          V +W
Subjt:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWT
        ++P    ++R FLG   Y  +F+   S+L  PL NL +K+V+++WT
Subjt:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWT

P0CT41 Transposon Tf2-12 polyprotein4.4e-2132.19Show/hide
Query:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MP+G++ APA F   +N +     +  V+ ++DDIL++S S+ +H +H++  LQ L++  L    +KCEF    + F+ + +S +G          V +W
Subjt:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWT
        ++P    ++R FLG   Y  +F+   S+L  PL NL +K+V+++WT
Subjt:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWT

P20825 Retrovirus-related Pol polyprotein from transposon 2973.9e-2537.5Show/hide
Query:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        MPFGL NAPA F   MN +  P L++  +V++DDI+++S S  +H   +++    L    L  +  KCEF      FL H+V+ +GI  +P K KA+  +
Subjt:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFE
          PT   +IR+FLGL GYY +F+  ++ +A P+T+  +K  K +
Subjt:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFE

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus7.8e-2637.68Show/hide
Query:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW
        +PFGL NAPA F  +++ +   H+ +   V+IDDI+V+S   + H ++LR+ L +L    L     K  F    + FL ++V+A+GI  DP+K +A+ + 
Subjt:  MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKW

Query:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTR
          PT + +++ FLG+  YY +F++ ++K+A PLTNLTR
Subjt:  ERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.8e-1741.18Show/hide
Query:  HLRIGLQTLRHRELYAKFSKCEFWLDWIVFL--VHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEW
        HL + LQ     + YA   KC F    I +L   H++S EG+  DP K +A+  W  P   T++R FLGL GYY RFV+ + K+  PLT L +KN   +W
Subjt:  HLRIGLQTLRHRELYAKFSKCEFWLDWIVFL--VHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEW

Query:  TD
        T+
Subjt:  TD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTTTGGGTTGACTAATGCCCCTGCAGCCTTCATGAACTTGATGAATCAGGTGTTTCATCCACACTTAGATCAATTTGTTATTGTGTTCATAGATGACATA
TTGGTTTATTCTGGGAGTAAAGAAAAGCATGCTGAACACCTCAGAATAGGGTTACAGACACTGCGACACCGAGAATTGTATGCTAAATTCAGTAAGTGCGAATTC
TGGCTGGATTGGATAGTATTTTTGGTTCATGTGGTTTCAGCAGAAGGCATTTGTGTCGATCCTCGGAAAACTAAAGCAGTAGATAAGTGGGAAAGACCTACCTTC
ATCACTAAGATCCGAAGTTTTCTTGGTTTAGCGGGGTATTATTGCCGATTTGTAGAAGGGTTTTCAAAATTGGCACTTCCCTTGACCAACCTAACAAGGAAGAAT
GTGAAGTTTGAATGGACAGATGCTTGTGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCTTTGGGTTGACTAATGCCCCTGCAGCCTTCATGAACTTGATGAATCAGGTGTTTCATCCACACTTAGATCAATTTGTTATTGTGTTCATAGATGACATA
TTGGTTTATTCTGGGAGTAAAGAAAAGCATGCTGAACACCTCAGAATAGGGTTACAGACACTGCGACACCGAGAATTGTATGCTAAATTCAGTAAGTGCGAATTC
TGGCTGGATTGGATAGTATTTTTGGTTCATGTGGTTTCAGCAGAAGGCATTTGTGTCGATCCTCGGAAAACTAAAGCAGTAGATAAGTGGGAAAGACCTACCTTC
ATCACTAAGATCCGAAGTTTTCTTGGTTTAGCGGGGTATTATTGCCGATTTGTAGAAGGGTTTTCAAAATTGGCACTTCCCTTGACCAACCTAACAAGGAAGAAT
GTGAAGTTTGAATGGACAGATGCTTGTGAATAG
Protein sequenceShow/hide protein sequence
MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTF
ITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE