; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0024181 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0024181
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr01:24544953..24546116
RNA-Seq ExpressionCmc01g0024181
SyntenyCmc01g0024181
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040699.1 pol protein [Cucumis melo var. makuwa]1.5e-21695.61Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSA+LITRQAPLHRDLERAEIAVSVGA+T+QLAQLTVQPTLRQRIIDAQSNDPYLVEK GLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA

Query:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK
        GQ VEFS+SSDGGLLFERRLCVP DSAVKTELLSEAHSSPFSMHP STKMYQDLKRVYWWRNM R++AEFVSRCLVCQQVKAPRQKPAGLLQPL IP+WK
Subjt:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG+RLDFST FHPQTD
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD

Query:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
        GQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
Subjt:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI

KAA0047043.1 pol protein [Cucumis melo var. makuwa]2.4e-21796.38Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSA+LITRQAPLHRDLERAEI VSVGAVTIQLA LTVQPTLRQRIIDAQSNDPYLVEK GLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA

Query:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK
        GQ VEFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHP STKMYQDLKRVYWWRNM RE+AEFVSRCLVCQQVKAPRQKPAGLLQPL IPEWK
Subjt:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFST FHPQTD
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD

Query:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
        GQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQS NEAIQKI
Subjt:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI

KAA0051368.1 pol protein [Cucumis melo var. makuwa]1.1e-21796.12Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSA+LITRQAPLHRDLERAEIAVSVGAVT+QLAQLTVQPTLRQRIIDAQSNDPYLVEK GLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA

Query:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK
        GQ  EFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHP STKMYQDLKRVYWWRNM RE+AEFVS+CLVCQQVKAPRQKPAGLLQPL IPEWK
Subjt:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFST FHPQTD
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD

Query:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
        GQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
Subjt:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI

KAA0051744.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-21695.87Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSA+LITRQAPLHRDLERAEIAVSVGAVT+QLAQLTVQPTLRQRIIDAQSNDPYLVEK GLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA

Query:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK
        GQ  EFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHP STKMYQDLKRVYWWRNM RE+AEFVS+CLVCQQVKAPRQKPAGLLQPL IPEWK
Subjt:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD
        WENVSMDFITGL RTLRGFTVIWVVVDRLTKSAHFV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDF T FHPQTD
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD

Query:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
        GQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
Subjt:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI

KAA0062835.1 pol protein [Cucumis melo var. makuwa]2.0e-21696.12Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA
        MRQRRWLELVKDYD EILYHPGKANVVADALSRKVSHSA+LITRQAPLHRDLERAEIAVSVGAVT+QLAQLTVQPTLRQRIIDAQSNDPYLVEK GLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA

Query:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK
        GQ VEFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHP STKMYQDLKRVYWWRNM RE+AEFVSRCLVCQQVKAPRQKPAGLLQPL IPEWK
Subjt:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFV GKSTYTA+KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFST FHPQTD
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD

Query:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
        GQTE LNQVLE+MLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
Subjt:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI

TrEMBL top hitse value%identityAlignment
A0A5A7THF3 Reverse transcriptase7.5e-21795.61Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSA+LITRQAPLHRDLERAEIAVSVGA+T+QLAQLTVQPTLRQRIIDAQSNDPYLVEK GLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA

Query:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK
        GQ VEFS+SSDGGLLFERRLCVP DSAVKTELLSEAHSSPFSMHP STKMYQDLKRVYWWRNM R++AEFVSRCLVCQQVKAPRQKPAGLLQPL IP+WK
Subjt:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG+RLDFST FHPQTD
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD

Query:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
        GQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
Subjt:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI

A0A5A7TU00 Pol protein1.2e-21796.38Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSA+LITRQAPLHRDLERAEI VSVGAVTIQLA LTVQPTLRQRIIDAQSNDPYLVEK GLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA

Query:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK
        GQ VEFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHP STKMYQDLKRVYWWRNM RE+AEFVSRCLVCQQVKAPRQKPAGLLQPL IPEWK
Subjt:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFST FHPQTD
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD

Query:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
        GQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQS NEAIQKI
Subjt:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI

A0A5A7U7V9 Reverse transcriptase5.2e-21896.12Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSA+LITRQAPLHRDLERAEIAVSVGAVT+QLAQLTVQPTLRQRIIDAQSNDPYLVEK GLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA

Query:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK
        GQ  EFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHP STKMYQDLKRVYWWRNM RE+AEFVS+CLVCQQVKAPRQKPAGLLQPL IPEWK
Subjt:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFST FHPQTD
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD

Query:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
        GQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
Subjt:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI

A0A5A7U8T5 Reverse transcriptase1.3e-21695.87Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSA+LITRQAPLHRDLERAEIAVSVGAVT+QLAQLTVQPTLRQRIIDAQSNDPYLVEK GLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA

Query:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK
        GQ  EFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHP STKMYQDLKRVYWWRNM RE+AEFVS+CLVCQQVKAPRQKPAGLLQPL IPEWK
Subjt:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD
        WENVSMDFITGL RTLRGFTVIWVVVDRLTKSAHFV GKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDF T FHPQTD
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD

Query:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
        GQTE LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
Subjt:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI

A0A5A7VAA9 Pol protein9.8e-21796.12Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA
        MRQRRWLELVKDYD EILYHPGKANVVADALSRKVSHSA+LITRQAPLHRDLERAEIAVSVGAVT+QLAQLTVQPTLRQRIIDAQSNDPYLVEK GLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEA

Query:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK
        GQ VEFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHP STKMYQDLKRVYWWRNM RE+AEFVSRCLVCQQVKAPRQKPAGLLQPL IPEWK
Subjt:  GQWVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFV GKSTYTA+KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFST FHPQTD
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTD

Query:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
        GQTE LNQVLE+MLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI
Subjt:  GQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.6e-4931.36Show/hide
Query:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEAG
        R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++   +ND  L+    L    
Subjt:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEAG

Query:  QWVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEW
        + VE +I    GLL   +  + +P+D+ +   ++ + H     +HP    +   + R + W+ + ++I E+V  C  CQ  K+   KP G LQP+   E 
Subjt:  QWVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEW

Query:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQT
         WE++SMDFIT LP +  G+  ++VVVDR +K A  V    + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQT
Subjt:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQT

Query:  DGQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY
        DGQTE  NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++
Subjt:  DGQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY

P0CT35 Transposon Tf2-2 polyprotein2.6e-4931.36Show/hide
Query:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEAG
        R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++   +ND  L+    L    
Subjt:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEAG

Query:  QWVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEW
        + VE +I    GLL   +  + +P+D+ +   ++ + H     +HP    +   + R + W+ + ++I E+V  C  CQ  K+   KP G LQP+   E 
Subjt:  QWVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEW

Query:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQT
         WE++SMDFIT LP +  G+  ++VVVDR +K A  V    + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQT
Subjt:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQT

Query:  DGQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY
        DGQTE  NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++
Subjt:  DGQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY

P0CT36 Transposon Tf2-3 polyprotein2.6e-4931.36Show/hide
Query:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEAG
        R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++   +ND  L+    L    
Subjt:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEAG

Query:  QWVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEW
        + VE +I    GLL   +  + +P+D+ +   ++ + H     +HP    +   + R + W+ + ++I E+V  C  CQ  K+   KP G LQP+   E 
Subjt:  QWVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEW

Query:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQT
         WE++SMDFIT LP +  G+  ++VVVDR +K A  V    + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQT
Subjt:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQT

Query:  DGQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY
        DGQTE  NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++
Subjt:  DGQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY

P0CT41 Transposon Tf2-12 polyprotein2.6e-4931.36Show/hide
Query:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEAG
        R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++   +ND  L+    L    
Subjt:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEAG

Query:  QWVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEW
        + VE +I    GLL   +  + +P+D+ +   ++ + H     +HP    +   + R + W+ + ++I E+V  C  CQ  K+   KP G LQP+   E 
Subjt:  QWVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEW

Query:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQT
         WE++SMDFIT LP +  G+  ++VVVDR +K A  V    + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQT
Subjt:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQT

Query:  DGQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY
        DGQTE  NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++
Subjt:  DGQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY

Q9UR07 Transposon Tf2-11 polyprotein2.6e-4931.36Show/hide
Query:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEAG
        R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++   +ND  L+    L    
Subjt:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEAG

Query:  QWVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEW
        + VE +I    GLL   +  + +P+D+ +   ++ + H     +HP    +   + R + W+ + ++I E+V  C  CQ  K+   KP G LQP+   E 
Subjt:  QWVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEW

Query:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQT
         WE++SMDFIT LP +  G+  ++VVVDR +K A  V    + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQT
Subjt:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQT

Query:  DGQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY
        DGQTE  NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++
Subjt:  DGQTELLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACAGCGAAGATGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTA
TCACATTCAGCATCACTTATTACCCGACAGGCCCCATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGGGCAGTCACTATACAGTTAGCCCAG
TTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGAGTAACGATCCTTATTTGGTTGAGAAATGTGGCCTAGCAGAGGCAGGGCAATGGGTTGAG
TTCTCCATATCCTCTGATGGTGGACTTTTGTTTGAGAGACGCCTCTGTGTGCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCTCACAGTTCCCCA
TTTTCCATGCACCCAAGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAATAGGGAGATAGCAGAATTTGTTAGTAGATGCTTA
GTATGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGTGCATACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACG
GGACTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCGCACTTCGTTCAGGGTAAATCCACCTATACTGCTAGT
AAGTGGGCACAGCTATACATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAAGGT
TTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGTTTTCCATCCACAGACTGACGGTCAGACTGAGCTCCTGAACCAAGTTTTAGAGGATATGTTGCGG
GCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCTCACTTGCATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCGCCATTTGAG
GCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTGTTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAG
AAGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGACAGCGAAGATGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTA
TCACATTCAGCATCACTTATTACCCGACAGGCCCCATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGGGCAGTCACTATACAGTTAGCCCAG
TTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGAGTAACGATCCTTATTTGGTTGAGAAATGTGGCCTAGCAGAGGCAGGGCAATGGGTTGAG
TTCTCCATATCCTCTGATGGTGGACTTTTGTTTGAGAGACGCCTCTGTGTGCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCTCACAGTTCCCCA
TTTTCCATGCACCCAAGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAATAGGGAGATAGCAGAATTTGTTAGTAGATGCTTA
GTATGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGTGCATACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACG
GGACTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCGCACTTCGTTCAGGGTAAATCCACCTATACTGCTAGT
AAGTGGGCACAGCTATACATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAAGGT
TTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGTTTTCCATCCACAGACTGACGGTCAGACTGAGCTCCTGAACCAAGTTTTAGAGGATATGTTGCGG
GCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCTCACTTGCATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCGCCATTTGAG
GCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTGTTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAG
AAGATTTGA
Protein sequenceShow/hide protein sequence
MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSASLITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKCGLAEAGQWVE
FSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPSSTKMYQDLKRVYWWRNMNREIAEFVSRCLVCQQVKAPRQKPAGLLQPLCIPEWKWENVSMDFIT
GLPRTLRGFTVIWVVVDRLTKSAHFVQGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTVFHPQTDGQTELLNQVLEDMLR
ACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKI