; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0024341 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0024341
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr01:24808879..24809745
RNA-Seq ExpressionCmc01g0024341
SyntenyCmc01g0024341
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2959003.1 reverse transcriptase [Olea europaea subsp. europaea]2.6e-12877.43Show/hide
Query:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER
        MDFLFGLPRT  G+D +WVIVDRLTKTA F P+K T+ L+KLAKLY++ IVS YG P+SIVSDRD  FTSKFWP LQ A+G KLHFS AFHPQTDGQSER
Subjt:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER

Query:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ
        TIQT EDMLRACVL+FKGSWDS L L+EFAYNNSYHSSIEMAP+EALYGR+CRT VCWDE G+RKL+G ELV+ T+ENV +IKE LK+AQ+RQK YAD++
Subjt:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ

Query:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        RKDLEF +GD VFLKLSPWKGVLRF ++GKLSPRYIG YEIIERIGPVAYRL  P ELSRIHDVFHVSMLRKY+ DP+H+LE  PV L
Subjt:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

CAA3011866.1 DNA RNA polymerases superfamily [Olea europaea subsp. europaea]1.7e-12777.08Show/hide
Query:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER
        MDFLFGLPRT +G+D +WVIVDRLTK A F P+K+T+ L KLAKLY++ IVS YGVPVSIVSDRD  FTSKFWP LQ A+G KLHFS AFHPQTDGQSER
Subjt:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER

Query:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ
        TIQT EDMLRACVL+FKGSWD+ L  +EFAYNNSYHSSIEMAP+EALYGR+CRT VCW EVGERKL+G +LV+  +ENVK+I+E LK+AQDR K YADK+
Subjt:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ

Query:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        RKDLEF VGD VFLKLSPWKGVLRF ++GKLSPRYIG Y++ ERIGPVAYRL  P ELSRIHDVFHVSMLRKY+ DP+H+LE QPVQL
Subjt:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

KAA0026229.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.3e-15896.18Show/hide
Query:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER
        MDFLFGLPRTPSGYD IWVIVDRLTKTACFTPVKVTF LDKLAKLYL+RIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFS AFHPQTDGQSER
Subjt:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER

Query:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ
        +IQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQD QK+YADK+
Subjt:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ

Query:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        RKDLEFEVGDNVFLK SPWKGVLRFR KGKLSPRYIGLYEIIERIGPVAYRLA PMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
Subjt:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-12575.35Show/hide
Query:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER
        MDFLFGLPRT SG+D IWVIVDRLTKT  F P+K+T  LD+LA+LY+++IVSQYGVPVSIVSDRD  FTSKFWP LQ A+G  L FS +FHPQTDGQSER
Subjt:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER

Query:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ
        TIQT EDMLRACVLQ KGSWD+ LPL+EFAYNN+Y SSI MAPYEALYGR CRT VCW+EVGERKL+G ELV+ TT N+K+I+E L+ AQDRQK YADK+
Subjt:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ

Query:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        R++LEF+VGD VFLKLSPW+GV+RF RKGKLSPRYIG Y+I ER+GP AYRL  P+EL+RIHDVFHVSMLRKY+PDP+H+L+ QPV+L
Subjt:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

TYK05214.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-12575.35Show/hide
Query:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER
        MDFLFGLPRT SG+D IWVIVDRLTKT  F P+K+T  LD+LA+LY+++IVSQYGVPVSIVSDRD  FTSKFWP LQ A+G  L FS +FHPQTDGQSER
Subjt:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER

Query:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ
        TIQT EDMLRACVLQ KGSWD+ LPL+EFAYNN+Y SSI MAPYEALYGR CRT VCW+EVGERKL+G ELV+ TT N+K+I+E L+ AQDRQK YADK+
Subjt:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ

Query:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        R++LEF+VGD VFLKLSPW+GV+RF RKGKLSPRYIG Y+I ER+GP AYRL  P+EL+RIHDVFHVSMLRKY+PDP+H+L+ QPV+L
Subjt:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

TrEMBL top hitse value%identityAlignment
A0A5A7SLT2 DNA/RNA polymerases superfamily protein4.5e-15896.18Show/hide
Query:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER
        MDFLFGLPRTPSGYD IWVIVDRLTKTACFTPVKVTF LDKLAKLYL+RIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFS AFHPQTDGQSER
Subjt:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER

Query:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ
        +IQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQD QK+YADK+
Subjt:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ

Query:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        RKDLEFEVGDNVFLK SPWKGVLRFR KGKLSPRYIGLYEIIERIGPVAYRLA PMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
Subjt:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

A0A5A7T1Y5 Reverse transcriptase7.7e-12675.35Show/hide
Query:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER
        MDFLFGLPRT SG+D IWVIVDRLTKT  F P+K+T  LD+LA+LY+++IVSQYGVPVSIVSDRD  FTSKFWP LQ A+G  L FS +FHPQTDGQSER
Subjt:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER

Query:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ
        TIQT EDMLRACVLQ KGSWD+ LPL+EFAYNN+Y SSI MAPYEALYGR CRT VCW+EVGERKL+G ELV+ TT N+K+I+E L+ AQDRQK YADK+
Subjt:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ

Query:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        R++LEF+VGD VFLKLSPW+GV+RF RKGKLSPRYIG Y+I ER+GP AYRL  P+EL+RIHDVFHVSMLRKY+PDP+H+L+ QPV+L
Subjt:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

A0A5A7U2V7 Reverse transcriptase7.7e-12675.35Show/hide
Query:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER
        MDFLFGLPRT SG+D IWVIVDRLTKT  F P+K+T  LD+LA+LY+++IVSQYGVPVSIVSDRD  FTSKFWP LQ A+G  L FS +FHPQTDGQSER
Subjt:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER

Query:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ
        TIQT EDMLRACVLQ KGSWD+ LPL+EFAYNN+Y SSI MAPYEALYGR CRT VCW+EVGERKL+G ELV+ TT N+K+I+E L+ AQDRQK YADK+
Subjt:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ

Query:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        R++LEF+VGD VFLKLSPW+GV+RF RKGKLSPRYIG Y+I ER+GP AYRL  P+EL+RIHDVFHVSMLRKY+PDP+H+L+ QPV+L
Subjt:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

A0A5D3BHI1 Reverse transcriptase7.7e-12675.35Show/hide
Query:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER
        MDFLFGLPRT SG+D IWVIVDRLTKT  F P+K+T  LD+LA+LY+++IVSQYGVPVSIVSDRD  FTSKFWP LQ A+G  L FS +FHPQTDGQSER
Subjt:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER

Query:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ
        TIQT EDMLRACVLQ KGSWD+ LPL+EFAYNN+Y SSI MAPYEALYGR CRT VCW+EVGERKL+G ELV+ TT N+K+I+E L+ AQDRQK YADK+
Subjt:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ

Query:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        R++LEF+VGD VFLKLSPW+GV+RF RKGKLSPRYIG Y+I ER+GP AYRL  P+EL+RIHDVFHVSMLRKY+PDP+H+L+ QPV+L
Subjt:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

A0A5D3BS67 Reverse transcriptase7.7e-12675.35Show/hide
Query:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER
        MDFLFGLPRT SG+D IWVIVDRLTKT  F P+K+T  LD+LA+LY+++IVSQYGVPVSIVSDRD  FTSKFWP LQ A+G  L FS +FHPQTDGQSER
Subjt:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER

Query:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ
        TIQT EDMLRACVLQ KGSWD+ LPL+EFAYNN+Y SSI MAPYEALYGR CRT VCW+EVGERKL+G ELV+ TT N+K+I+E L+ AQDRQK YADK+
Subjt:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ

Query:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        R++LEF+VGD VFLKLSPW+GV+RF RKGKLSPRYIG Y+I ER+GP AYRL  P+EL+RIHDVFHVSMLRKY+PDP+H+L+ QPV+L
Subjt:  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein9.3e-3632Show/hide
Query:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER
        MDF+  LP + SGY+ ++V+VDR +K A   P   +   ++ A+++ +R+++ +G P  I++D D IFTS+ W    +     + FS+ + PQTDGQ+ER
Subjt:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER

Query:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ
        T QT E +LR        +W   + LV+ +YNN+ HS+ +M P+E ++  R   ++   E+        E  + T +  + +KE L     + K Y D +
Subjt:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ

Query:  RKDL-EFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRI-HDVFHVSMLRKY
         +++ EF+ GD V +K +   G L   +  KL+P + G + ++++ GP  Y L  P  +  +    FHVS L KY
Subjt:  RKDL-EFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRI-HDVFHVSMLRKY

P0CT35 Transposon Tf2-2 polyprotein9.3e-3632Show/hide
Query:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER
        MDF+  LP + SGY+ ++V+VDR +K A   P   +   ++ A+++ +R+++ +G P  I++D D IFTS+ W    +     + FS+ + PQTDGQ+ER
Subjt:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER

Query:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ
        T QT E +LR        +W   + LV+ +YNN+ HS+ +M P+E ++  R   ++   E+        E  + T +  + +KE L     + K Y D +
Subjt:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ

Query:  RKDL-EFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRI-HDVFHVSMLRKY
         +++ EF+ GD V +K +   G L   +  KL+P + G + ++++ GP  Y L  P  +  +    FHVS L KY
Subjt:  RKDL-EFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRI-HDVFHVSMLRKY

P0CT36 Transposon Tf2-3 polyprotein9.3e-3632Show/hide
Query:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER
        MDF+  LP + SGY+ ++V+VDR +K A   P   +   ++ A+++ +R+++ +G P  I++D D IFTS+ W    +     + FS+ + PQTDGQ+ER
Subjt:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER

Query:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ
        T QT E +LR        +W   + LV+ +YNN+ HS+ +M P+E ++  R   ++   E+        E  + T +  + +KE L     + K Y D +
Subjt:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ

Query:  RKDL-EFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRI-HDVFHVSMLRKY
         +++ EF+ GD V +K +   G L   +  KL+P + G + ++++ GP  Y L  P  +  +    FHVS L KY
Subjt:  RKDL-EFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRI-HDVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein9.3e-3632Show/hide
Query:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER
        MDF+  LP + SGY+ ++V+VDR +K A   P   +   ++ A+++ +R+++ +G P  I++D D IFTS+ W    +     + FS+ + PQTDGQ+ER
Subjt:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER

Query:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ
        T QT E +LR        +W   + LV+ +YNN+ HS+ +M P+E ++  R   ++   E+        E  + T +  + +KE L     + K Y D +
Subjt:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ

Query:  RKDL-EFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRI-HDVFHVSMLRKY
         +++ EF+ GD V +K +   G L   +  KL+P + G + ++++ GP  Y L  P  +  +    FHVS L KY
Subjt:  RKDL-EFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRI-HDVFHVSMLRKY

Q9UR07 Transposon Tf2-11 polyprotein9.3e-3632Show/hide
Query:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER
        MDF+  LP + SGY+ ++V+VDR +K A   P   +   ++ A+++ +R+++ +G P  I++D D IFTS+ W    +     + FS+ + PQTDGQ+ER
Subjt:  MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSER

Query:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ
        T QT E +LR        +W   + LV+ +YNN+ HS+ +M P+E ++  R   ++   E+        E  + T +  + +KE L     + K Y D +
Subjt:  TIQTFEDMLRACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ

Query:  RKDL-EFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRI-HDVFHVSMLRKY
         +++ EF+ GD V +K +   G L   +  KL+P + G + ++++ GP  Y L  P  +  +    FHVS L KY
Subjt:  RKDL-EFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRI-HDVFHVSMLRKY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTTTTGTTTGGTTTGCCTCGAACTCCGAGTGGTTATGACAGAATATGGGTGATCGTCGACAGACTTACTAAGACCGCATGTTTCACACCAGTTAAAGTGACATT
TAGGCTTGATAAATTAGCCAAATTATACCTTGAAAGGATAGTGAGCCAGTATGGAGTCCCAGTATCGATTGTGTCTGATAGAGATTCGATATTTACTTCCAAGTTTTGGC
CTAGGTTACAGAACGCACTTGGAATTAAATTACATTTTAGCATAGCTTTCCATCCTCAAACCGATGGTCAGTCAGAGAGAACCATACAGACTTTTGAAGACATGTTACGG
GCATGTGTTTTACAGTTCAAAGGAAGTTGGGATTCTCAACTACCATTGGTGGAATTTGCCTATAATAATAGTTACCATTCTAGTATCGAAATGGCACCATATGAGGCATT
GTATGGTCGACGATGTAGAACTTCTGTTTGTTGGGATGAAGTTGGTGAAAGAAAGCTAATGGGGCTAGAATTGGTACGTTCCACCACAGAAAATGTGAAAGTAATCAAGG
AAAAATTGAAAATGGCGCAAGATCGACAAAAACATTATGCTGATAAACAACGAAAAGATTTGGAATTTGAGGTTGGTGACAATGTTTTTCTTAAATTGTCACCATGGAAA
GGCGTGCTAAGATTCAGAAGGAAGGGGAAACTAAGTCCAAGATATATTGGTCTATATGAAATTATTGAACGAATTGGACCGGTTGCATATCGATTAGCCCCGCCAATGGA
ACTTTCCAGAATCCATGATGTATTTCATGTATCGATGTTGCGTAAATACGTTCCTGACCCGACACACATCTTAGAATATCAACCAGTGCAGTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTTTTGTTTGGTTTGCCTCGAACTCCGAGTGGTTATGACAGAATATGGGTGATCGTCGACAGACTTACTAAGACCGCATGTTTCACACCAGTTAAAGTGACATT
TAGGCTTGATAAATTAGCCAAATTATACCTTGAAAGGATAGTGAGCCAGTATGGAGTCCCAGTATCGATTGTGTCTGATAGAGATTCGATATTTACTTCCAAGTTTTGGC
CTAGGTTACAGAACGCACTTGGAATTAAATTACATTTTAGCATAGCTTTCCATCCTCAAACCGATGGTCAGTCAGAGAGAACCATACAGACTTTTGAAGACATGTTACGG
GCATGTGTTTTACAGTTCAAAGGAAGTTGGGATTCTCAACTACCATTGGTGGAATTTGCCTATAATAATAGTTACCATTCTAGTATCGAAATGGCACCATATGAGGCATT
GTATGGTCGACGATGTAGAACTTCTGTTTGTTGGGATGAAGTTGGTGAAAGAAAGCTAATGGGGCTAGAATTGGTACGTTCCACCACAGAAAATGTGAAAGTAATCAAGG
AAAAATTGAAAATGGCGCAAGATCGACAAAAACATTATGCTGATAAACAACGAAAAGATTTGGAATTTGAGGTTGGTGACAATGTTTTTCTTAAATTGTCACCATGGAAA
GGCGTGCTAAGATTCAGAAGGAAGGGGAAACTAAGTCCAAGATATATTGGTCTATATGAAATTATTGAACGAATTGGACCGGTTGCATATCGATTAGCCCCGCCAATGGA
ACTTTCCAGAATCCATGATGTATTTCATGTATCGATGTTGCGTAAATACGTTCCTGACCCGACACACATCTTAGAATATCAACCAGTGCAGTTATAA
Protein sequenceShow/hide protein sequence
MDFLFGLPRTPSGYDRIWVIVDRLTKTACFTPVKVTFRLDKLAKLYLERIVSQYGVPVSIVSDRDSIFTSKFWPRLQNALGIKLHFSIAFHPQTDGQSERTIQTFEDMLR
ACVLQFKGSWDSQLPLVEFAYNNSYHSSIEMAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQRKDLEFEVGDNVFLKLSPWK
GVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL