; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0024741 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0024741
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr01:25280527..25281354
RNA-Seq ExpressionCmc01g0024741
SyntenyCmc01g0024741
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037745.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.4e-14896Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS
        MDVKN+FLNGTLSEEVYMKPPPGTSSPPHKVCLL RALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIIT NDP AIS
Subjt:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA
        DLQHYLGQHFEMKDLGSLNYFLGLE+SRRSDGYLLSQAKYASDLLARSGIT+SNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT PDIAYA
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA

Query:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
        VHIVSQFMA PRTIHFTAVLRILRYVKGT GHGLQFSSQSSLVLSGYSDADWA DPTDRRSTTGYCFYLGDSLIS
Subjt:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS

KAA0041601.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.4e-14896Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS
        MDVKN+FLNGTLSEEVYMKPPPGTSSPPHKVCLL RALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIIT NDP AIS
Subjt:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA
        DLQHYLGQHFEMKDLGSLNYFLGLE+SRRSDGYLLSQAKYASDLLARSGIT+SNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT PDIAYA
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA

Query:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
        VHIVSQFMA PRTIHFTAVLRILRYVKGT GHGLQFSSQSSLVLSGYSDADWA DPTDRRSTTGYCFYLGDSLIS
Subjt:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS

TYK04714.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.4e-14896Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS
        MDVKN+FLNGTLSEEVYMKPPPGTSSPPHKVCLL RALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIIT NDP AIS
Subjt:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA
        DLQHYLGQHFEMKDLGSLNYFLGLE+SRRSDGYLLSQAKYASDLLARSGIT+SNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT PDIAYA
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA

Query:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
        VHIVSQFMA PRTIHFTAVLRILRYVKGT GHGLQFSSQSSLVLSGYSDADWA DPTDRRSTTGYCFYLGDSLIS
Subjt:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS

TYK21532.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.7e-14896.36Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS
        MDVKN+FLNGTLSEEVYMKPPPGTSSPPHKVCLL RALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIIT NDPQAIS
Subjt:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA
        DLQHYLGQHFEMKDLGSLNYFLGLE+SRRSDGYLLSQAKYASDLLARSGIT+SNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT PDIAYA
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA

Query:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
        VHIVSQFMA PRTIHFTAVLRILRYVKGT GHGLQFSSQSSLVLSGYSDADWA DPTDRRSTTGYCFYLGDSLIS
Subjt:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS

TYK30390.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.1e-14795.27Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS
        MDVKN+FLNGTLSEE+YMKPPPGTSSPPHKVCLL RALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIIT NDPQAIS
Subjt:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA
        DLQHYLGQHFEMKDLGSLNYFLGLE+SRRSDGYLLSQAKYASDLLARSGIT+SNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT PDI YA
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA

Query:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
        VHIVSQFMA PRTIHFTAVLRILRY+KGT GHGLQFSSQSSLVLSGYSDADWA DPTDRRSTTGYCFYLGDSLIS
Subjt:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS

TrEMBL top hitse value%identityAlignment
A0A5A7T8F2 Retrovirus-related Pol polyprotein from transposon TNT 1-943.1e-14896Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS
        MDVKN+FLNGTLSEEVYMKPPPGTSSPPHKVCLL RALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIIT NDP AIS
Subjt:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA
        DLQHYLGQHFEMKDLGSLNYFLGLE+SRRSDGYLLSQAKYASDLLARSGIT+SNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT PDIAYA
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA

Query:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
        VHIVSQFMA PRTIHFTAVLRILRYVKGT GHGLQFSSQSSLVLSGYSDADWA DPTDRRSTTGYCFYLGDSLIS
Subjt:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS

A0A5A7VIT8 Retrovirus-related Pol polyprotein from transposon TNT 1-943.1e-14896Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS
        MDVKN+FLNGTLSEEVYMKPPPGTSSPPHKVCLL RALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIIT NDP AIS
Subjt:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA
        DLQHYLGQHFEMKDLGSLNYFLGLE+SRRSDGYLLSQAKYASDLLARSGIT+SNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT PDIAYA
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA

Query:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
        VHIVSQFMA PRTIHFTAVLRILRYVKGT GHGLQFSSQSSLVLSGYSDADWA DPTDRRSTTGYCFYLGDSLIS
Subjt:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS

A0A5D3C0D7 Retrovirus-related Pol polyprotein from transposon TNT 1-943.1e-14896Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS
        MDVKN+FLNGTLSEEVYMKPPPGTSSPPHKVCLL RALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIIT NDP AIS
Subjt:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA
        DLQHYLGQHFEMKDLGSLNYFLGLE+SRRSDGYLLSQAKYASDLLARSGIT+SNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT PDIAYA
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA

Query:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
        VHIVSQFMA PRTIHFTAVLRILRYVKGT GHGLQFSSQSSLVLSGYSDADWA DPTDRRSTTGYCFYLGDSLIS
Subjt:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS

A0A5D3DD70 Retrovirus-related Pol polyprotein from transposon TNT 1-948.1e-14996.36Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS
        MDVKN+FLNGTLSEEVYMKPPPGTSSPPHKVCLL RALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIIT NDPQAIS
Subjt:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA
        DLQHYLGQHFEMKDLGSLNYFLGLE+SRRSDGYLLSQAKYASDLLARSGIT+SNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT PDIAYA
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA

Query:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
        VHIVSQFMA PRTIHFTAVLRILRYVKGT GHGLQFSSQSSLVLSGYSDADWA DPTDRRSTTGYCFYLGDSLIS
Subjt:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS

A0A5D3E4B0 Putative mitochondrial protein5.3e-14895.27Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS
        MDVKN+FLNGTLSEE+YMKPPPGTSSPPHKVCLL RALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIIT NDPQAIS
Subjt:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAIS

Query:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA
        DLQHYLGQHFEMKDLGSLNYFLGLE+SRRSDGYLLSQAKYASDLLARSGIT+SNTASTPLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLTVT PDI YA
Subjt:  DLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYA

Query:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
        VHIVSQFMA PRTIHFTAVLRILRY+KGT GHGLQFSSQSSLVLSGYSDADWA DPTDRRSTTGYCFYLGDSLIS
Subjt:  VHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.2e-4436.46Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALF--TRHTPQGIVLLLLYVDDMIITSNDPQA
        MDVK +FLNGTL EE+YM+ P G S     VC L++A+YGLKQA R WF  F   + +  F +S  D  ++   +      + +LLYVDD++I + D   
Subjt:  MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALF--TRHTPQGIVLLLLYVDDMIITSNDPQA

Query:  ISDLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSL-YRQLVGSLIYLTV-THPD
        +++ + YL + F M DL  + +F+G+ I  + D   LSQ+ Y   +L++  + N N  STPL   ++    +    ED +   R L+G L+Y+ + T PD
Subjt:  ISDLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSL-YRQLVGSLIYLTV-THPD

Query:  IAYAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSL--VLSGYSDADWAEDPTDRRSTTGYCFYLGD
        +  AV+I+S++ +   +  +  + R+LRY+KGT    L F    +    + GY D+DWA    DR+STTGY F + D
Subjt:  IAYAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSL--VLSGYSDADWAEDPTDRRSTTGYCFYLGD

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.8e-4540.97Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPPG--TSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTAL-FTRHTPQGIVLLLLYVDDMIITSNDPQ
        +DVK +FL+G L EE+YM+ P G   +   H VC L+++LYGLKQAPR W+  F S +    +  +  D  + F R +    ++LLLYVDDM+I   D  
Subjt:  MDVKNSFLNGTLSEEVYMKPPPG--TSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTAL-FTRHTPQGIVLLLLYVDDMIITSNDPQ

Query:  AISDLQHYLGQHFEMKDLGSLNYFLGLEI--SRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHL-------TPYDGVPLEDVSLYRQLVGSLI
         I+ L+  L + F+MKDLG     LG++I   R S    LSQ KY   +L R  + N+   STPL  ++ L       T  +   +  V  Y   VGSL+
Subjt:  AISDLQHYLGQHFEMKDLGSLNYFLGLEI--SRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHL-------TPYDGVPLEDVSLYRQLVGSLI

Query:  YLTV-THPDIAYAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
        Y  V T PDIA+AV +VS+F+  P   H+ AV  ILRY++GT G  L F   S  +L GY+DAD A D  +R+S+TGY F      IS
Subjt:  YLTV-THPDIAYAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS

P25600 Putative transposon Ty5-1 protein YCL074W6.2e-3733.69Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPPG--TSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQA
        MDV  +FLN T+ E +Y+K PPG      P  V  L+  +YGLKQAP  W    ++T+ ++GF     +  L+ R T  G + + +YVDD+++ +  P+ 
Subjt:  MDVKNSFLNGTLSEEVYMKPPPG--TSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQA

Query:  ISDLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYL-LSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVT-HPD
           ++  L + + MKDLG ++ FLGL I + S+G + LS   Y +   + S I       TPL  +  L       L+D++ Y+ +VG L++   T  PD
Subjt:  ISDLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYL-LSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVT-HPD

Query:  IAYAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
        I+Y V ++S+F+  PR IH  +  R+LRY+  T    L++ S S L L+ Y DA          ST GY   L  + ++
Subjt:  IAYAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE17.7e-6446.93Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPPG--TSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQA
        +DV N+FL GTL+++VYM  PPG      P+ VC L +ALYGLKQAPRAW+    + +  +GF +S  DT+LF     + IV +L+YVDD++IT NDP  
Subjt:  MDVKNSFLNGTLSEEVYMKPPPG--TSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQA

Query:  ISDLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIA
        + +    L Q F +KD   L+YFLG+E  R   G  LSQ +Y  DLLAR+ +  +   +TP+ P+  L+ Y G  L D + YR +VGSL YL  T PDI+
Subjt:  ISDLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIA

Query:  YAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
        YAV+ +SQFM  P   H  A+ RILRY+ GT  HG+     ++L L  YSDADWA D  D  ST GY  YLG   IS
Subjt:  YAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.3e-6044.4Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPPG--TSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQA
        +DV N+FL GTL++EVYM  PPG      P  VC L +A+YGLKQAPRAW+    + +  +GF +S  DT+LF     + I+ +L+YVDD++IT ND   
Subjt:  MDVKNSFLNGTLSEEVYMKPPPG--TSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQA

Query:  ISDLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIA
        +      L Q F +K+   L+YFLG+E  R   G  LSQ +Y  DLLAR+ +  +   +TP+  +  LT + G  L D + YR +VGSL YL  T PD++
Subjt:  ISDLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIA

Query:  YAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
        YAV+ +SQ+M  P   H+ A+ R+LRY+ GT  HG+     ++L L  YSDADWA D  D  ST GY  YLG   IS
Subjt:  YAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.2e-6645.91Show/hide
Query:  MDVKNSFLNGTLSEEVYMKPPP------GTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSN
        +D+ N+FLNG L EE+YMK PP      G S PP+ VC L +++YGLKQA R WF  FS T+   GF  S  D   F + T    + +L+YVDD+II SN
Subjt:  MDVKNSFLNGTLSEEVYMKPPP------GTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSN

Query:  DPQAISDLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTH
        +  A+ +L+  L   F+++DLG L YFLGLEI+R + G  + Q KYA DLL  +G+     +S P+DP+V  + + G    D   YR+L+G L+YL +T 
Subjt:  DPQAISDLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTH

Query:  PDIAYAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
         DI++AV+ +SQF   PR  H  AV++IL Y+KGT G GL +SSQ+ + L  +SDA +      RRST GYC +LG SLIS
Subjt:  PDIAYAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS

ATMG00240.1 Gag-Pol-related retrotransposon family protein7.3e-1749.37Show/hide
Query:  IYLTVTHPDIAYAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYC
        +YLT+T PD+ +AV+ +SQF +  RT    AV ++L YVKGT G GL +S+ S L L  ++D+DWA  P  RRS TG+C
Subjt:  IYLTVTHPDIAYAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYC

ATMG00810.1 DNA/RNA polymerases superfamily protein1.3e-3743.3Show/hide
Query:  LLLYVDDMIITSNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYR
        LLLYVDD+++T +    ++ L   L   F MKDLG ++YFLG++I     G  LSQ KYA  +L  +G+ +    STPL   ++ +        D S +R
Subjt:  LLLYVDDMIITSNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYR

Query:  QLVGSLIYLTVTHPDIAYAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS
         +VG+L YLT+T PDI+YAV+IV Q M  P    F  + R+LRYVKGT  HGL     S L +  + D+DWA   + RRSTTG+C +LG ++IS
Subjt:  QLVGSLIYLTVTHPDIAYAVHIVSQFMATPRTIHFTAVLRILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTCAAAAATTCTTTCCTTAATGGGACTCTTTCTGAAGAAGTGTATATGAAGCCACCTCCTGGTACTTCTTCTCCTCCTCACAAGGTGTGCCTCTTGCATCGCGC
ACTATATGGTCTCAAACAGGCTCCACGAGCTTGGTTTGCCACGTTTAGCTCTACCATCACTCAACTTGGGTTTACTTCCAGTCCTCATGATACTGCACTCTTTACTCGTC
ATACACCCCAGGGTATTGTTCTTCTTCTTCTCTATGTTGATGACATGATTATCACTAGTAATGATCCACAGGCCATATCCGATCTCCAACACTACCTTGGTCAACATTTT
GAAATGAAAGACCTTGGGTCTCTCAACTACTTTCTTGGTCTTGAAATCTCTCGGCGCTCGGACGGGTATCTATTGTCCCAAGCTAAATATGCCTCTGATCTTTTAGCCCG
CTCAGGAATTACTAACTCTAACACAGCTTCAACGCCGTTAGATCCCAACGTTCATTTAACCCCTTATGATGGTGTTCCTCTTGAAGATGTCAGTCTGTATCGGCAACTCG
TTGGCAGTCTCATCTATCTAACAGTGACTCACCCAGACATTGCATATGCTGTTCACATTGTTAGCCAATTTATGGCTACTCCTCGAACCATCCACTTTACTGCCGTACTT
CGTATCCTTCGCTATGTCAAGGGAACCTTTGGACATGGACTTCAGTTTTCTTCTCAATCATCTCTTGTATTATCTGGCTATTCCGATGCAGATTGGGCTGAGGATCCCAC
TGATCGGCGTTCTACAACCGGTTACTGCTTCTACTTAGGCGATTCTCTCATTTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGTCAAAAATTCTTTCCTTAATGGGACTCTTTCTGAAGAAGTGTATATGAAGCCACCTCCTGGTACTTCTTCTCCTCCTCACAAGGTGTGCCTCTTGCATCGCGC
ACTATATGGTCTCAAACAGGCTCCACGAGCTTGGTTTGCCACGTTTAGCTCTACCATCACTCAACTTGGGTTTACTTCCAGTCCTCATGATACTGCACTCTTTACTCGTC
ATACACCCCAGGGTATTGTTCTTCTTCTTCTCTATGTTGATGACATGATTATCACTAGTAATGATCCACAGGCCATATCCGATCTCCAACACTACCTTGGTCAACATTTT
GAAATGAAAGACCTTGGGTCTCTCAACTACTTTCTTGGTCTTGAAATCTCTCGGCGCTCGGACGGGTATCTATTGTCCCAAGCTAAATATGCCTCTGATCTTTTAGCCCG
CTCAGGAATTACTAACTCTAACACAGCTTCAACGCCGTTAGATCCCAACGTTCATTTAACCCCTTATGATGGTGTTCCTCTTGAAGATGTCAGTCTGTATCGGCAACTCG
TTGGCAGTCTCATCTATCTAACAGTGACTCACCCAGACATTGCATATGCTGTTCACATTGTTAGCCAATTTATGGCTACTCCTCGAACCATCCACTTTACTGCCGTACTT
CGTATCCTTCGCTATGTCAAGGGAACCTTTGGACATGGACTTCAGTTTTCTTCTCAATCATCTCTTGTATTATCTGGCTATTCCGATGCAGATTGGGCTGAGGATCCCAC
TGATCGGCGTTCTACAACCGGTTACTGCTTCTACTTAGGCGATTCTCTCATTTCTTAG
Protein sequenceShow/hide protein sequence
MDVKNSFLNGTLSEEVYMKPPPGTSSPPHKVCLLHRALYGLKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITSNDPQAISDLQHYLGQHF
EMKDLGSLNYFLGLEISRRSDGYLLSQAKYASDLLARSGITNSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTHPDIAYAVHIVSQFMATPRTIHFTAVL
RILRYVKGTFGHGLQFSSQSSLVLSGYSDADWAEDPTDRRSTTGYCFYLGDSLIS