CuGenDBv2

Gene ID	Cmc01g0024801
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr01:25380834..25381598
RNA-Seq Expression	Cmc01g0024801
Synteny	Cmc01g0024801
Gene Ontology terms	GO:0045489 - pectin biosynthetic process (biological process) GO:0016567 - protein ubiquitination (biological process) GO:0015074 - DNA integration (biological process) GO:0007018 - microtubule-based movement (biological process) GO:0006508 - proteolysis (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0005524 - ATP binding (molecular function) GO:0004842 - ubiquitin-protein transferase activity (molecular function) GO:0008017 - microtubule binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0004144 - diacylglycerol O-acyltransferase activity (molecular function) GO:0003777 - microtubule motor activity (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity (molecular function) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

BAD34493.1 Gag-Pol [Ipomoea batatas]

7.0e-109

77.56

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Query:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT
        MQDCK ISTPL +N K+S++ S S+E  RMEMSRV YASAVGSLMFAMICTRPDIA A+GVVSRYMANPGREHWN VKRILRYIKG+ DVALCYGG+DF 
Subjt:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT

Query:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK
        I GYVD DYAGDLDKSKST GYVF +A GAVSWVSKLQ+VVA STTEAEYVAATQASKEA+WLK+LLEELGH+ + +SLFCD+QSAL+LARNPAFH++TK
Subjt:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK

Query:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET
        HIRVQYHF+ E+V+EG +D+ KIHT +N+AD+LTK +N DKF WCRSS GL ET
Subjt:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET

KAE8679209.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Hibiscus syriacus]

5.6e-106

74.8

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Query:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT
        MQDCK ISTPLS+NFK+S++ S S++ ERMEMSRV YASAVGSLMFAMICTRPDIA A+GVVSRYMANPG+EHWN VKRILRYIKG  +VALCY G++  
Subjt:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT

Query:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK
        I GYVD DYAGDLDKSKST GYVF +A GAVSW+SKLQS+VA ST EAEYVAATQASKEA+WLK+LLEELGH  + +SLFCD+QSA +LARNP FH++ K
Subjt:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK

Query:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET
        HIRVQYHF+ E+VEEG +DM KIHTK+N+AD++TKA+N +KF WCRSS G++ET
Subjt:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET

KAE8698382.1 putative ribonuclease H protein [Hibiscus syriacus]

3.3e-106

75.2

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Query:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT
        MQDCK ISTPLS+NFK+S++ S SSE ERMEMSRV YASAVGSLMFAMICTRPDIA A+GVVSRYM NPG+E+WN VKRILRYIKG+ +VALCYGG++  
Subjt:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT

Query:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK
        I GYVD DYAGDLDKSKST GYVF +  GAVSWVSKLQSVV  STTEAEYVAATQASKE +WLK+LLEELGH  + +SLFCD+QSAL+LARNP FH++TK
Subjt:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK

Query:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET
        HIR QYHF+ E+VEEG +D+ KIHTK+N+AD++ K++N DKF WCRSS GL+ET
Subjt:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET

KAE8725385.1 Desiccation-related protein PCC13-62 [Hibiscus syriacus]

2.4e-109

77.95

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Query:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT
        MQDCK ISTPL +NFK+S++ S SSE ERMEMSRV YASAVGSLMFAMICTRPDIA A+GVVSRYMANPG+EHWN VKRILRYIKG+ +VALCY G++  
Subjt:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT

Query:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK
        I GYVD DYAGDLDKSKST GYVF +A GAVSWVSKLQSVVA STTEAEYVAATQASKEA+WLK+L EELGH  + +SLFCD+QSAL+LARNPAFH++TK
Subjt:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK

Query:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET
        HIRVQYHF+ E+VEEG +DM KIHTK+N+AD++TKA+N DKF WCRSS GL+ET
Subjt:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET

KAE8730652.1 putative galacturonosyltransferase 6 [Hibiscus syriacus]

7.5e-111

78.74

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Query:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT
        MQDCK ISTPL +NFK+S++ S SSE ERMEMSRV YASAVGSLMFAMICTRPDIA A+GVVSRYMANPG+EHWN VKRILRYIKG+ +VALCYGG++  
Subjt:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT

Query:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK
        I GYVD DYAGDLDKSKST GYVF +A GAVSWVSKLQSVVA STTEAEYVAATQASKEA+WLK+LLEELGH  + +SLFCD+QSAL+LARNPAFH++TK
Subjt:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK

Query:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET
        HIRVQYHF+ E+VEEG +DM KIHTK+N+AD++TKA+N DKF WCRSS GL+ET
Subjt:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET

TrEMBL top hits

e value

%identity

Alignment

A0A2N9FMI2 Integrase catalytic domain-containing protein

1.3e-113

79.92

Show/hide

Query:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT
        MQDCK I TPL +NFK+S++ S S+EAERMEMSRV YASAVGSLMFAM+CTRPDIA A+GVVSRYMANPG+EHWN VKRILRY+KG+ +VALCYGG+DFT
Subjt:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT

Query:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK
        +RGYVD DYAGDLDKSKST GYVFTLA GAVSWVSKLQS+VA STTEAEYVAATQASKEA+WL++LLEELGH+ +KI+LFCD+QSAL+LA+NPAFH+KTK
Subjt:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK

Query:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET
        HIRVQYHFV E+VEEG +D+ KIHTK+NLAD LTK +N DKFIWCRSS GLA+T
Subjt:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET

A0A2N9FMR2 Uncharacterized protein

1.5e-112

79.13

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Query:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT
        MQDCK I TPL +NFK+S++ S S+EAERMEMSRV YASAVGSLMFAM+CTRPDIA A+GVVSRYM NPG+EHW+ VKRILRY+KG+ +VALCYGG+DFT
Subjt:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT

Query:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK
        +RGYVD DYAGDLDKSKST GYVFTLA GAVSWVSKLQS+VA STTEAEYVAATQASKEA+WL++LLEELGH+ +KI+LFCD+QSAL+LA+NPAFH+KTK
Subjt:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK

Query:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET
        HIRVQYHFV E+VEEG +D+ KIHTK+NLAD LTK +N DKFIWCRSS GLA+T
Subjt:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET

A0A2N9GLP2 Uncharacterized protein

1.5e-112

79.13

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Query:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT
        MQDCK I TPL +NFK+S++ S S+EAERMEMSRV YASAVGSLMFAM+CTRPDIA A+GVVSRYM NPG+EHW+ VKRILRY+KG+ +VALCYGG+DFT
Subjt:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT

Query:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK
        +RGYVD DYAGDLDKSKST GYVFTLA GAVSWVSKLQS+VA STTEAEYVAATQASKEA+WL++LLEELGH+ +KI+LFCD+QSAL+LA+NPAFH+KTK
Subjt:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK

Query:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET
        HIRVQYHFV E+VEEG +D+ KIHTK+NLAD LTK +N DKFIWCRSS GLA+T
Subjt:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET

A0A2N9IUS6 Uncharacterized protein

1.5e-112

79.13

Show/hide

Query:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT
        MQDCK I TPL +NFK+S++ S S+EAERMEMSRV YASAVGSLMFAM+CTRPDIA A+GVVSRYM NPG+EHW+ VKRILRY+KG+ +VALCYGG+DFT
Subjt:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT

Query:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK
        +RGYVD DYAGDLDKSKST GYVFTLA GAVSWVSKLQS+VA STTEAEYVAATQASKEA+WL++LLEELGH+ +KI+LFCD+QSAL+LA+NPAFH+KTK
Subjt:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK

Query:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET
        HIRVQYHFV E+VEEG +D+ KIHTK+NLAD LTK +N DKFIWCRSS GLA+T
Subjt:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET

A0A2N9J635 Uncharacterized protein

1.3e-113

79.92

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Query:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT
        MQDCK I TPL +NFK+S++ S S+EAERMEMSRV YASAVGSLMFAM+CTRPDIA A+GVVSRYMANPG+EHWN VKRILRY+KG+ +VALCYGG+DFT
Subjt:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT

Query:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK
        +RGYVD DYAGDLDKSKST GYVFTLA GAVSWVSKLQS+VA STTEAEYVAATQASKEA+WL++LLEELGH+ +KI+LFCD+QSAL+LA+NPAFH+KTK
Subjt:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK

Query:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET
        HIRVQYHFV E+VEEG +D+ KIHTK+NLAD LTK +N DKFIWCRSS GLA+T
Subjt:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

5.0e-41

36.92

Show/hide

Query:  MQDCKRISTPL--SVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYG---
        M++C  +STPL   +N+++  +    +   R         S +G LM+ M+CTRPD+  A+ ++SRY +    E W  +KR+LRY+KG+ID+ L +    
Subjt:  MQDCKRISTPL--SVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYG---

Query:  GTDFTIRGYVDFDYAGDLDKSKSTIGYVFTLAS-GAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHE-HKKISLFCDNQSALYLARNP
          +  I GYVD D+AG     KST GY+F +     + W +K Q+ VA S+TEAEY+A  +A +EA+WLK LL  +  +    I ++ DNQ  + +A NP
Subjt:  GTDFTIRGYVDFDYAGDLDKSKSTIGYVFTLAS-GAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHE-HKKISLFCDNQSALYLARNP

Query:  AFHAKTKHIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAE
        + H + KHI ++YHF  E+V+  +I +  I T+  LAD  TK +   +F+  R   GL +
Subjt:  AFHAKTKHIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAE

P0CV72 Secreted RxLR effector protein 161

7.0e-27

46.32

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Query:  MSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCY--GGTDFTIRGYVDFDYAGDLDKSKSTIGYVFTLASG
        M  V Y SAVG++M+ M+ TRPD+A A+GV+S++ ++P   HW  +KR+LRY++ +    L +   GT   + GY D D+AGD++  +ST GY+F L  G
Subjt:  MSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCY--GGTDFTIRGYVDFDYAGDLDKSKSTIGYVFTLASG

Query:  AVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKI
         VSW SK Q  VA+S+TE EY+A ++A++EAVWL +
Subjt:  AVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-71

51.79

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Query:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT
        M++ K +STPL+ + K+S     ++  E+  M++V Y+SAVGSLM+AM+CTRPDIAHA+GVVSR++ NPG+EHW  VK ILRY++G+    LC+GG+D  
Subjt:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFT

Query:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK
        ++GY D D AGD+D  KS+ GY+FT + GA+SW SKLQ  VA+STTEAEY+AAT+  KE +WLK  L+ELG   K+  ++CD+QSA+ L++N  +HA+TK
Subjt:  IRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTK

Query:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGL
        HI V+YH++ E V++  + + KI T EN AD LTK V  +KF  C+   G+
Subjt:  HIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.3e-33

36.07

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Query:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVAL-CYGGTDF
        M   K ++TP++ + K+S    +             Y   VGSL + +  TRPDI++A+  +S++M  P  EH   +KRILRY+ G+ +  +    G   
Subjt:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVAL-CYGGTDF

Query:  TIRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELG-HEHKKISLFCDNQSALYLARNPAFHAK
        ++  Y D D+AGD D   ST GY+  L    +SW SK Q  V  S+TEAEY +    S E  W+  LL ELG    +   ++CDN  A YL  NP FH++
Subjt:  TIRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELG-HEHKKISLFCDNQSALYLARNPAFHAK

Query:  TKHIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKF
         KHI + YHF+  +V+ G + +  + T + LAD LTK ++   F
Subjt:  TKHIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKF

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

2.2e-36

36.33

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Query:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVAL-CYGGTDF
        M   K ++TP++ + K++ +  +             Y   VGSL + +  TRPD+++A+  +S+YM  P  +HWN +KR+LRY+ G+ D  +    G   
Subjt:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVAL-CYGGTDF

Query:  TIRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHE--HKKISLFCDNQSALYLARNPAFHA
        ++  Y D D+AGD D   ST GY+  L    +SW SK Q  V  S+TEAEY +    S E  W+  LL ELG +  H  + ++CDN  A YL  NP FH+
Subjt:  TIRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHE--HKKISLFCDNQSALYLARNPAFHA

Query:  KTKHIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKF
        + KHI + YHF+  +V+ G + +  + T + LAD LTK ++   F
Subjt:  KTKHIRVQYHFVHEEVEEGIIDMHKIHTKENLADYLTKAVNTDKF

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

3.7e-23

33.81

Show/hide

Query:  CKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGG-TDFTIR
        CK  S P+  +   S +           +   +Y   +G LM+  I TR DI+ A+  +S++   P   H   V +IL YIKG++   L Y    +  ++
Subjt:  CKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGG-TDFTIR

Query:  GYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHE-HKKISLFCDNQSALYLARNPAFHAKTKH
         + D  +    D  +ST GY   L +  +SW SK Q VV+ S+ EAEY A + A+ E +WL     EL     K   LFCDN +A+++A N  FH +TKH
Subjt:  GYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHE-HKKISLFCDNQSALYLARNPAFHAKTKH

Query:  IRVQYHFVHE
        I    H V E
Subjt:  IRVQYHFVHE

ATMG00810.1 DNA/RNA polymerases superfamily protein

3.9e-17

34.36

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Query:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVAL-CYGGTDF
        M DCK +STPL +        SS S A+  + S   + S VG+L + +  TRPDI++A+ +V + M  P    ++++KR+LRY+KG+I   L  +  +  
Subjt:  MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVAL-CYGGTDF

Query:  TIRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVW
         ++ + D D+AG     +ST G+   L    +SW +K Q  V+ S+TE EY A    + E  W
Subjt:  TIRGYVDFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVW

Sequences

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CDS sequence

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ATGCAAGACTGTAAGCGAATTTCTACCCCTCTTTCTGTTAATTTTAAGATATCCACCAATAAGAGTTCTAGCAGTGAAGCAGAGAGGATGGAGATGTCTCGAGTA
TCGTATGCATCGGCAGTGGGAAGTTTAATGTTTGCCATGATATGTACCAGACCAGACATTGCACATGCAATGGGAGTAGTTAGTCGGTATATGGCGAATCCTGGT
CGAGAGCATTGGAATATTGTTAAAAGGATCCTTAGATACATCAAAGGATCCATAGATGTTGCATTGTGTTATGGAGGAACAGATTTTACTATCAGAGGATATGTT
GACTTCGATTATGCAGGAGATCTTGATAAAAGCAAATCTACCATCGGATATGTGTTTACTCTTGCTAGTGGTGCTGTAAGCTGGGTTTCCAAACTACAGTCAGTT
GTGGCTATGTCAACAACAGAAGCAGAATATGTTGCTGCTACACAAGCTAGTAAAGAAGCAGTTTGGTTAAAAATACTATTGGAAGAGCTCGGACATGAACATAAG
AAAATCTCTTTGTTTTGTGACAATCAGAGTGCCTTGTATCTTGCAAGAAATCCAGCTTTCCATGCCAAGACCAAACATATTCGAGTGCAGTACCACTTCGTTCAT
GAGGAAGTAGAGGAAGGAATAATAGATATGCATAAAATTCATACAAAAGAAAACCTAGCAGATTACTTGACCAAGGCAGTCAACACTGACAAGTTCATTTGGTGT
CGATCCTCAAATGGCCTAGCTGAAACATAA

mRNA sequence

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Protein sequence

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MQDCKRISTPLSVNFKISTNKSSSSEAERMEMSRVSYASAVGSLMFAMICTRPDIAHAMGVVSRYMANPGREHWNIVKRILRYIKGSIDVALCYGGTDFTIRGYV
DFDYAGDLDKSKSTIGYVFTLASGAVSWVSKLQSVVAMSTTEAEYVAATQASKEAVWLKILLEELGHEHKKISLFCDNQSALYLARNPAFHAKTKHIRVQYHFVH
EEVEEGIIDMHKIHTKENLADYLTKAVNTDKFIWCRSSNGLAET

Cmc01g0024801 (gene) of Melon (Charmono) v1.1 genome