; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0025151 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0025151
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionCoatomer, beta' subunit
Genome locationCMiso1.1chr01:25780868..25783694
RNA-Seq ExpressionCmc01g0025151
SyntenyCmc01g0025151
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0030117 - membrane coat (cellular component)
GO:0030663 - COPI-coated vesicle membrane (cellular component)
GO:0005198 - structural molecule activity (molecular function)
InterPro domainsIPR006692 - Coatomer, WD associated region


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD6340303.1 unnamed protein product [Miscanthus lutarioriparius]2.8e-4487.88Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
        AE I+GG LL MC +DFICFYDWA+ RLIRRIDVNVKN+YWADSGDLVAIASDTSFYILKYNVTTM+HLDRPMYLLGYLA+QSRVYLIDKEFNV+GYTL
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL

KAA0062345.1 coatomer subunit beta'-2-like isoform X3 [Cucumis melo var. makuwa]2.1e-4461.68Show/hide
Query:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN-----------------------
        MKSKELSLFYV PLLAEHIYGGTLL MC NDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN                       
Subjt:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN-----------------------

Query:  -----------------------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNV
                                           VTTMFHLDRPMY LGYLASQSRVYLI+ EFNV
Subjt:  -----------------------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNV

KAF9617296.1 hypothetical protein IFM89_035240 [Coptis chinensis]1.3e-4693.94Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
        AEHI+GGTLL MC NDFICFYDWAE RLI RIDVNVKNLYWADSGDLVAIASDTSFYILKYNVTTMFHLDRPMYLLGYLA+QSRVYLIDKEFNVVGYTL
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL

KAG1330078.1 putative Coatomer subunit beta'-1 [Cocos nucifera]4.9e-4169.47Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------VTTMFH
        AE I+GGTLL MC NDFICFYDWAE RLIRRIDVNVKN+YWADSGDLVAIASDTSFYILKYN                                VTTMFH
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------VTTMFH

Query:  LDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
        LDRPMYLLGYLA+QSRVYLIDKEFNV+GYTL
Subjt:  LDRPMYLLGYLASQSRVYLIDKEFNVVGYTL

XP_008460512.2 PREDICTED: coatomer subunit beta'-1-like [Cucumis melo]1.7e-4963.43Show/hide
Query:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN-----------------------
        MKSKELSLFYV PLLAEHIYGGTLL MC NDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN                       
Subjt:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN-----------------------

Query:  ------------------------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTLKC
                                            VTTMFHLDRPMY LGYLASQSRVYLI+KEFNVVGYTLKC
Subjt:  ------------------------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTLKC

TrEMBL top hitse value%identityAlignment
A0A1S3BIG1 Coatomer subunit beta'1.5e-4060.76Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------
        AEHIYGGTLL MC NDFICFYDWAE RLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN                                      
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------

Query:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
                             VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
Subjt:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL

A0A1S3CDW5 coatomer subunit beta'-1-like8.1e-5063.43Show/hide
Query:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN-----------------------
        MKSKELSLFYV PLLAEHIYGGTLL MC NDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN                       
Subjt:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN-----------------------

Query:  ------------------------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTLKC
                                            VTTMFHLDRPMY LGYLASQSRVYLI+KEFNVVGYTLKC
Subjt:  ------------------------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTLKC

A0A5A7UAX5 Coatomer subunit beta'-2-like isoform X11.5e-4060.76Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------
        AEHIYGGTLL MC NDFICFYDWAE RLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN                                      
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------

Query:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
                             VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
Subjt:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL

A0A5A7V8X3 Coatomer subunit beta'-2-like isoform X31.0e-4461.68Show/hide
Query:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN-----------------------
        MKSKELSLFYV PLLAEHIYGGTLL MC NDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN                       
Subjt:  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN-----------------------

Query:  -----------------------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNV
                                           VTTMFHLDRPMY LGYLASQSRVYLI+ EFNV
Subjt:  -----------------------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNV

A0A6J1DL37 Coatomer subunit beta'1.5e-4060.76Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------
        AEHIYGGTLL MC NDFICFYDWAE RLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN                                      
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------

Query:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
                             VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
Subjt:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL

SwissProt top hitse value%identityAlignment
Q5VQ78 Coatomer subunit beta'-14.7e-3955.7Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------
        AE I+GG LL MC +DFICFYDWA+ RLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN                                      
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------

Query:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
                             VTTM+HLDRPMYLLGYLA+QSRVYLIDKEFNV+GYTL
Subjt:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL

Q6H8D5 Coatomer subunit beta'-22.1e-3954.66Show/hide
Query:  PLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN-----------------------------------
        P  AE I+GG LL MC NDFICF+DWAEGR+IRRIDVNVKNLYWADSGDLV IASDTSFYILKYN                                   
Subjt:  PLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN-----------------------------------

Query:  ------------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
                                VTT+FHLDR MYLLGYLA+QSRVYLIDK+FNVVGYTL
Subjt:  ------------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL

Q6H8D6 Putative coatomer subunit beta'-32.1e-3954.66Show/hide
Query:  PLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN-----------------------------------
        P  AE I+GG LL MC NDFICF+DWAEGR+IRRIDVNVKNLYWADSGDLV IASDTSFYILKYN                                   
Subjt:  PLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN-----------------------------------

Query:  ------------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
                                VTT+FHLDR MYLLGYLA+QSRVYLIDK+FNVVGYTL
Subjt:  ------------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL

Q9C827 Coatomer subunit beta'-22.4e-3854.43Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------
        AE I+GGTLL MC +DFICFYDWAE RLI+RIDV VKNLYWADSGDLVAIASDTSFYILK+N                                      
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------

Query:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
                             VTTM+HLDRPMYLLGYLASQSRV+L+DKEFNV+GYTL
Subjt:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL

Q9CAA0 Coatomer subunit beta'-11.1e-4056.96Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------
        AEHI+GGTLLTMC +DFICFYDWAE RLIRRIDV VKNLYWADSGDLVAIASDTSFYILK+N                                      
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------

Query:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
                             VTTM+HLDRPMYLLGYLA+QSRVYLIDKEFNV+GYTL
Subjt:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL

Arabidopsis top hitse value%identityAlignment
AT1G52360.1 Coatomer, beta' subunit1.7e-3954.43Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------
        AE I+GGTLL MC +DFICFYDWAE RLI+RIDV VKNLYWADSGDLVAIASDTSFYILK+N                                      
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------

Query:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
                             VTTM+HLDRPMYLLGYLASQSRV+L+DKEFNV+GYTL
Subjt:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL

AT1G52360.2 Coatomer, beta' subunit1.7e-3954.43Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------
        AE I+GGTLL MC +DFICFYDWAE RLI+RIDV VKNLYWADSGDLVAIASDTSFYILK+N                                      
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------

Query:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
                             VTTM+HLDRPMYLLGYLASQSRV+L+DKEFNV+GYTL
Subjt:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL

AT1G79990.1 structural molecules8.0e-4256.96Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------
        AEHI+GGTLLTMC +DFICFYDWAE RLIRRIDV VKNLYWADSGDLVAIASDTSFYILK+N                                      
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------

Query:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
                             VTTM+HLDRPMYLLGYLA+QSRVYLIDKEFNV+GYTL
Subjt:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL

AT1G79990.3 structural molecules8.0e-4256.96Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------
        AEHI+GGTLLTMC +DFICFYDWAE RLIRRIDV VKNLYWADSGDLVAIASDTSFYILK+N                                      
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------

Query:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
                             VTTM+HLDRPMYLLGYLA+QSRVYLIDKEFNV+GYTL
Subjt:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL

AT1G79990.5 structural molecules8.0e-4256.96Show/hide
Query:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------
        AEHI+GGTLLTMC +DFICFYDWAE RLIRRIDV VKNLYWADSGDLVAIASDTSFYILK+N                                      
Subjt:  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYN--------------------------------------

Query:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL
                             VTTM+HLDRPMYLLGYLA+QSRVYLIDKEFNV+GYTL
Subjt:  ---------------------VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVVGYTL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGTAAGGAACTATCATTATTTTATGTTGTTCCATTGTTAGCCGAGCACATCTATGGAGGAACTCTGTTAACCATGTGTCCCAATGATTTTATATGTTTCTATGA
TTGGGCAGAGGGCAGACTGATCCGCCGTATTGATGTAAATGTGAAGAACCTTTATTGGGCTGATAGTGGTGATTTGGTGGCAATAGCCAGTGATACATCATTTTATATCC
TGAAGTACAATGTAACCACAATGTTCCATTTGGATCGACCCATGTATTTGCTTGGATATCTTGCCAGCCAAAGTCGGGTCTATTTGATAGACAAAGAGTTCAATGTCGTT
GGATACACATTGAAGTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCTTGTCTATTTTCTCTCTACTGGAAAACACATGATCCGTAATCACTTCAAGCAATAGTTCGATTTCTTCATTGATCAGGTGGTCTGTACATCCATGAAAAGTAAG
GAACTATCATTATTTTATGTTGTTCCATTGTTAGCCGAGCACATCTATGGAGGAACTCTGTTAACCATGTGTCCCAATGATTTTATATGTTTCTATGATTGGGCAGAGGG
CAGACTGATCCGCCGTATTGATGTAAATGTGAAGAACCTTTATTGGGCTGATAGTGGTGATTTGGTGGCAATAGCCAGTGATACATCATTTTATATCCTGAAGTACAATG
TAACCACAATGTTCCATTTGGATCGACCCATGTATTTGCTTGGATATCTTGCCAGCCAAAGTCGGGTCTATTTGATAGACAAAGAGTTCAATGTCGTTGGATACACATTG
AAGTGTTAAGACCCTTGTAATGCGTGGGGACTATGAAAGAGCCAACGAAATCTTACCTTCAATTCCCAAGGAGCATCGTAATAGTGTGGCCCGTTTCTTGGAAGCACGAG
GTATGATAGAGGAAGCTCTGGAAGTAGCTACTGATCCAGAGGAGTATCCTAATTTGTTTAATGATTGGCAAGTTGCACTTTCTGTTGAATCTAGAGCTACACAAGACAGG
GAGTTATCACTAAACAAATGACTGCAATAGAAGAAATGGTTGCAAGTGAGTACAATTAGCCAGACCCTCATCTTTGTGACAAGATCTTGAAGTTAGTCATTTGTGAAGCG
TTCTA
Protein sequenceShow/hide protein sequence
MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVV
GYTLKC