| GenBank top hits | e value | %identity | Alignment |
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| GAU19483.1 hypothetical protein TSUD_77270 [Trifolium subterraneum] | 2.6e-60 | 51.34 | Show/hide |
Query: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
+DD+S++ WIYPLKQKS V AF F +NQFNK +K+ Q D GEY +QKL + GI R SCPYTS QNGR ERKHRH+ E GLTLLAQA + L+
Subjt: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
Query: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
YWWEAF TAV LIN +P+ Q SP ++ ++ ++ LK FGCAC+ CL+PY +K + H+ +CVFLG S HK GRIF+SRH+ FNE F
Subjt: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
Query: PFSKLFPMTELTQPTNIQPMSSPF
PF F T T I S+ F
Subjt: PFSKLFPMTELTQPTNIQPMSSPF
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| KYP50444.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] | 1.0e-59 | 44.37 | Show/hide |
Query: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
+DD+S++ WIYPLKQKS AF F V+NQFNK +K Q D GE+ + K+ + GI R SCPYTSAQNGR ERKHRHVVESGLTLLAQA + L+
Subjt: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
Query: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
YWWEAF TAV LIN +PT ++ SP + LF + +++ +K FGCAC+ CL+PY +K + H+ KCVFLG S HK TGRIF+SRH+ FNE F
Subjt: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
Query: PFSKLF-----PMTELTQPTNIQPMSSPFLSIPSHNQWIFSPHQPQCYPSPSLDPLQPTPTLSNSTNSIPQNPVPPT--DNNLHTISPPQSTS
PF F P +T PT++ SP S ++ + + + S ++ + +I QN + +NN+ +I+ Q T+
Subjt: PFSKLF-----PMTELTQPTNIQPMSSPFLSIPSHNQWIFSPHQPQCYPSPSLDPLQPTPTLSNSTNSIPQNPVPPT--DNNLHTISPPQSTS
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| MCH94186.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Trifolium medium] | 5.8e-60 | 51.34 | Show/hide |
Query: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
+DD+S++ WIYPLKQKS V AF F +NQFNK +K+ Q D GEY +QKL + GI R SCPYTS QNGR ERKHRH+ E GLTLLAQA + L+
Subjt: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
Query: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
YWWEAF TAV LIN +P+ Q SP ++ ++ ++ LK FGCAC+ CL+PY +K + H+ +CVFLG S HK GRIF+SRH+ FNE F
Subjt: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
Query: PFSKLFPMTELTQPTNIQPMSSPF
PF F T T I S+ F
Subjt: PFSKLFPMTELTQPTNIQPMSSPF
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| PNY02796.1 copia protein (gag-int-pol protein), partial [Trifolium pratense] | 1.3e-59 | 55.45 | Show/hide |
Query: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
+DD+S++ WIYPLKQKS + AF F T V+NQFNK +KI Q D GEY +QKL L GI R SCPYTS QNGR ERKHRHV E GLT+LAQA + L
Subjt: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
Query: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
YWWEAF T+V LIN +P+ Q P +++ ++ ++S LK FGCAC+ CL+PY +K + H+ +CVFLG S HK GRIFVSRH+ FNE F
Subjt: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
Query: PF
PF
Subjt: PF
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| TYK24146.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 4.6e-73 | 86.14 | Show/hide |
Query: CACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEFPFSKLFPMTELTQPTNIQPMSSPFLSIPSHNQWIFSPHQPQCYP
C+ C RPYQSNKFEQHSEKCVFLGPSPVHK KTGRIFVSRH+RF ESEFPFSKLFPMTELTQPTNIQPMSSPFLSIPSHNQWIFS HQPQCYP
Subjt: CACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEFPFSKLFPMTELTQPTNIQPMSSPFLSIPSHNQWIFSPHQPQCYP
Query: SPSLDPLQPTPTLSNSTNSIPQNPVPPTDNNLHTISPPQSTSLDQSSSFVSIYQSTSIEASLPRPP
SPSLDPLQPTPTLSNS+NSIPQNP+PPTDNNLHTIS PQSTSLDQSSSFVS+Y ST IEASL P
Subjt: SPSLDPLQPTPTLSNSTNSIPQNPVPPTDNNLHTISPPQSTSLDQSSSFVSIYQSTSIEASLPRPP
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A151S6M8 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.8e-60 | 44.37 | Show/hide |
Query: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
+DD+S++ WIYPLKQKS AF F V+NQFNK +K Q D GE+ + K+ + GI R SCPYTSAQNGR ERKHRHVVESGLTLLAQA + L+
Subjt: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
Query: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
YWWEAF TAV LIN +PT ++ SP + LF + +++ +K FGCAC+ CL+PY +K + H+ KCVFLG S HK TGRIF+SRH+ FNE F
Subjt: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
Query: PFSKLF-----PMTELTQPTNIQPMSSPFLSIPSHNQWIFSPHQPQCYPSPSLDPLQPTPTLSNSTNSIPQNPVPPT--DNNLHTISPPQSTS
PF F P +T PT++ SP S ++ + + + S ++ + +I QN + +NN+ +I+ Q T+
Subjt: PFSKLF-----PMTELTQPTNIQPMSSPFLSIPSHNQWIFSPHQPQCYPSPSLDPLQPTPTLSNSTNSIPQNPVPPT--DNNLHTISPPQSTS
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| A0A2Z6MBG6 Integrase catalytic domain-containing protein | 1.3e-60 | 51.34 | Show/hide |
Query: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
+DD+S++ WIYPLKQKS V AF F +NQFNK +K+ Q D GEY +QKL + GI R SCPYTS QNGR ERKHRH+ E GLTLLAQA + L+
Subjt: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
Query: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
YWWEAF TAV LIN +P+ Q SP ++ ++ ++ LK FGCAC+ CL+PY +K + H+ +CVFLG S HK GRIF+SRH+ FNE F
Subjt: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
Query: PFSKLFPMTELTQPTNIQPMSSPF
PF F T T I S+ F
Subjt: PFSKLFPMTELTQPTNIQPMSSPF
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| A0A392N2Z1 Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) | 2.8e-60 | 51.34 | Show/hide |
Query: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
+DD+S++ WIYPLKQKS V AF F +NQFNK +K+ Q D GEY +QKL + GI R SCPYTS QNGR ERKHRH+ E GLTLLAQA + L+
Subjt: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
Query: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
YWWEAF TAV LIN +P+ Q SP ++ ++ ++ LK FGCAC+ CL+PY +K + H+ +CVFLG S HK GRIF+SRH+ FNE F
Subjt: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
Query: PFSKLFPMTELTQPTNIQPMSSPF
PF F T T I S+ F
Subjt: PFSKLFPMTELTQPTNIQPMSSPF
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| A0A5D3DKJ4 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.2e-73 | 86.14 | Show/hide |
Query: CACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEFPFSKLFPMTELTQPTNIQPMSSPFLSIPSHNQWIFSPHQPQCYP
C+ C RPYQSNKFEQHSEKCVFLGPSPVHK KTGRIFVSRH+RF ESEFPFSKLFPMTELTQPTNIQPMSSPFLSIPSHNQWIFS HQPQCYP
Subjt: CACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEFPFSKLFPMTELTQPTNIQPMSSPFLSIPSHNQWIFSPHQPQCYP
Query: SPSLDPLQPTPTLSNSTNSIPQNPVPPTDNNLHTISPPQSTSLDQSSSFVSIYQSTSIEASLPRPP
SPSLDPLQPTPTLSNS+NSIPQNP+PPTDNNLHTIS PQSTSLDQSSSFVS+Y ST IEASL P
Subjt: SPSLDPLQPTPTLSNSTNSIPQNPVPPTDNNLHTISPPQSTSLDQSSSFVSIYQSTSIEASLPRPP
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| A0A803Q615 Uncharacterized protein | 4.2e-64 | 49.44 | Show/hide |
Query: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
+DDYS+Y WIYPLK KS A+ AF HF T +N ++ +K +SD GEY GI+ + SCP+TSAQNGR ERKHRH+VE GLTLLAQA I
Subjt: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
Query: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
YWW+AF T+V LIN +PTP L+G SP+E+LF +K ++ LK FGC C+ CLRPYQS+KF+ HS KCV LG S HK TGR+++SR++ FNE EF
Subjt: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQKTGRIFVSRHMRFNESEF
Query: PFSKLFPMTELTQPT--NIQPMSSPFLSIP-SHNQWIFSPHQPQCYPSPSLDPLQPTPTLSNSTNSIPQ
PF F T + T P S L+IP S +Q P +P+ P+P D + P+ ST++I Q
Subjt: PFSKLFPMTELTQPT--NIQPMSSPFLSIP-SHNQWIFSPHQPQCYPSPSLDPLQPTPTLSNSTNSIPQ
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.2e-17 | 30.51 | Show/hide |
Query: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYM--KIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASIS
+D ++ Y Y +K KS FQ F+ + FN + DN EY+ ++++ C+ GI+ + P+T NG ER R + E T+++ A +
Subjt: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYM--KIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASIS
Query: LNYWWEAFLTAVILINGMPTPTL--QGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSP
++W EA LTA LIN +P+ L +P E+ +K L+VFG + ++ Q KF+ S K +F+G P
Subjt: LNYWWEAFLTAVILINGMPTPTL--QGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSP
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| P0C2J0 Transposon Ty1-PR2 Gag-Pol polyprotein | 1.1e-05 | 26.02 | Show/hide |
Query: DDYSKYIWIYPL--KQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMK--IQK-LCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQAS
D+ +K+ W+YPL +++ + +D F + ++KNQF ++ + Q D EY + K L GI ++ S +G ER +R +++ T L +
Subjt: DDYSKYIWIYPL--KQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMK--IQK-LCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQAS
Query: ISLNYWWEAFLTAVILINGMPTP
+ + W+ A + I+ N + +P
Subjt: ISLNYWWEAFLTAVILINGMPTP
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 7.8e-23 | 34.3 | Show/hide |
Query: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEY--MKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASIS
+DD S+ +W+Y LK K FQ F V+ + + LK +SDN GEY + ++ C + GI + P T NG ER +R +VE ++L A +
Subjt: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEY--MKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASIS
Query: LNYWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLG
++W EA TA LIN P+ L P + +++++S LKVFGC F+ + Q K + S C+F+G
Subjt: LNYWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLG
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 4.5e-47 | 38.22 | Show/hide |
Query: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
+D +++Y W+YPLKQKS + F F ++N+F + F SDN GE++ + + GI+ S P+T NG ERKHRH+VE+GLTLL+ ASI
Subjt: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
Query: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQ-KTGRIFVSRHMRFNESE
YW AF AV LIN +PTP LQ SP + LF N+ +L+VFGCAC+ LRPY +K + S +CVFLG S +T R+++SRH+RF+E+
Subjt: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQ-KTGRIFVSRHMRFNESE
Query: FPFSKLFPMTELTQPTNIQPMSSPFLSIPSHNQWIFSPHQPQCYPSPSLDPLQPTPTLSNSTNSI--PQNPVPPTDNNLHTISPPQSTSLDQ--SSSFVS
FPFS N SP + ++SPH P+ P+ P P+ S+ ++ P +P P N S S++LD SSSF S
Subjt: FPFSKLFPMTELTQPTNIQPMSSPFLSIPSHNQWIFSPHQPQCYPSPSLDPLQPTPTLSNSTNSI--PQNPVPPTDNNLHTISPPQSTSLDQ--SSSFVS
Query: IYQSTSIEASLPRP
+ T+ + P+P
Subjt: IYQSTSIEASLPRP
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.1e-45 | 34.9 | Show/hide |
Query: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
+D +++Y W+YPLKQKS D F F + V+N+F + SDN GE++ ++ GI+ S P+T NG ERKHRH+VE GLTLL+ AS+
Subjt: MDDYSKYIWIYPLKQKSAAVDAFQHFITYVKNQFNKTLKIFQSDNWGEYMKIQKLCLTMGINCRFSCPYTSAQNGRIERKHRHVVESGLTLLAQASISLN
Query: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQ-KTGRIFVSRHMRFNESE
YW AF AV LIN +PTP LQ SP + LF + N+ +LKVFGCAC+ LRPY +K E S++C F+G S TGR++ SRH++F+E
Subjt: YWWEAFLTAVILINGMPTPTLQGMSPIEILFARKLNFSELKVFGCACFSCLRPYQSNKFEQHSEKCVFLGPSPVHKRVSACQ-KTGRIFVSRHMRFNESE
Query: FPFS-----------------------KLFPMTELTQP----------TNIQPMSSPF------------------------LSIPSHN--QWIFSPHQP
FPFS P T L P T+ +P SSP + PSHN Q PHQ
Subjt: FPFS-----------------------KLFPMTELTQP----------TNIQPMSSPF------------------------LSIPSHN--QWIFSPHQP
Query: QCYPSPS-----LDPLQPTPTLSNSTNSIPQNPVPPTDNNLHTISPPQSTSLDQSSSFVSIYQSTSIEASLPRPPFLVLPSYSQ
Q S S +P P+P N + +PQ+P+ ++ H P STS+ + +S S+S ++ P PP L P Q
Subjt: QCYPSPS-----LDPLQPTPTLSNSTNSIPQNPVPPTDNNLHTISPPQSTSLDQSSSFVSIYQSTSIEASLPRPPFLVLPSYSQ
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