; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc01g0025731 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc01g0025731
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr01:26653124..26653870
RNA-Seq ExpressionCmc01g0025731
SyntenyCmc01g0025731
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025425.1 pol protein [Cucumis melo var. makuwa]1.4e-10681.85Show/hide
Query:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR
        L+  R +   G+A+ EFSLSSDGGLLFERRLCVPSDSAVKTELL+EAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVC QQVKA  +   
Subjt:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR

Query:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
                  +  E+  M+        F TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
Subjt:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG

Query:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
        LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
Subjt:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH

KAA0025469.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.4e-10781.85Show/hide
Query:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR
        L+  R +   G+A V FS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVC QQVKA G+   
Subjt:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR

Query:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
                  +  E+  M+        F TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
Subjt:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG

Query:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
        LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
Subjt:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH

KAA0047043.1 pol protein [Cucumis melo var. makuwa]6.4e-10782.26Show/hide
Query:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR
        L+  R +   G+A VEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVC QQVKA  +   
Subjt:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR

Query:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
                  +  E+  M+        F TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
Subjt:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG

Query:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
        LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
Subjt:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH

KAA0051368.1 pol protein [Cucumis melo var. makuwa]1.9e-10681.85Show/hide
Query:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR
        L+  R +   G+ + EFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVC QQVKA  +   
Subjt:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR

Query:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
                  +  E+  M+        F TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
Subjt:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG

Query:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
        LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
Subjt:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH

KAA0065438.1 pol protein [Cucumis melo var. makuwa]1.9e-10681.85Show/hide
Query:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR
        L+  R +   G+A VEFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVC QQVKA  +   
Subjt:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR

Query:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
                  +  E+  M+        F TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
Subjt:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG

Query:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
        LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
Subjt:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH

TrEMBL top hitse value%identityAlignment
A0A5A7SJH3 Reverse transcriptase4.1e-10781.85Show/hide
Query:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR
        L+  R +   G+A V FS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVC QQVKA G+   
Subjt:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR

Query:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
                  +  E+  M+        F TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
Subjt:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG

Query:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
        LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
Subjt:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH

A0A5A7SLT0 Pol protein6.9e-10781.85Show/hide
Query:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR
        L+  R +   G+A+ EFSLSSDGGLLFERRLCVPSDSAVKTELL+EAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVC QQVKA  +   
Subjt:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR

Query:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
                  +  E+  M+        F TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
Subjt:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG

Query:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
        LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
Subjt:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH

A0A5A7TU00 Pol protein3.1e-10782.26Show/hide
Query:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR
        L+  R +   G+A VEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVC QQVKA  +   
Subjt:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR

Query:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
                  +  E+  M+        F TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
Subjt:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG

Query:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
        LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
Subjt:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH

A0A5A7U7V9 Reverse transcriptase9.0e-10781.85Show/hide
Query:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR
        L+  R +   G+ + EFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVC QQVKA  +   
Subjt:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR

Query:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
                  +  E+  M+        F TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
Subjt:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG

Query:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
        LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
Subjt:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH

A0A5A7VCT0 Pol protein9.0e-10781.85Show/hide
Query:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR
        L+  R +   G+A VEFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVC QQVKA  +   
Subjt:  LIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQR

Query:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
                  +  E+  M+        F TGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG
Subjt:  --------VYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKG

Query:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
        LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
Subjt:  LQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein3.1e-2729.46Show/hide
Query:  LRNVPSRGRASVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQRV
        L N+ +     VE ++    GLL   +  + +P+D+ +   ++ + H     +HPG   +   + R + W+ +++++ E+V  C  C  Q+  + RN + 
Subjt:  LRNVPSRGRASVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQRV

Query:  YYNLE--HTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGT
        Y  L+         E     F T LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK        
Subjt:  YYNLE--HTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGT

Query:  RLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
         + FS  + PQTDGQTER NQ +E +LR      P +W  H
Subjt:  RLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH

P0CT35 Transposon Tf2-2 polyprotein3.1e-2729.46Show/hide
Query:  LRNVPSRGRASVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQRV
        L N+ +     VE ++    GLL   +  + +P+D+ +   ++ + H     +HPG   +   + R + W+ +++++ E+V  C  C  Q+  + RN + 
Subjt:  LRNVPSRGRASVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQRV

Query:  YYNLE--HTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGT
        Y  L+         E     F T LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK        
Subjt:  YYNLE--HTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGT

Query:  RLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
         + FS  + PQTDGQTER NQ +E +LR      P +W  H
Subjt:  RLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH

P0CT36 Transposon Tf2-3 polyprotein3.1e-2729.46Show/hide
Query:  LRNVPSRGRASVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQRV
        L N+ +     VE ++    GLL   +  + +P+D+ +   ++ + H     +HPG   +   + R + W+ +++++ E+V  C  C  Q+  + RN + 
Subjt:  LRNVPSRGRASVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQRV

Query:  YYNLE--HTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGT
        Y  L+         E     F T LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK        
Subjt:  YYNLE--HTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGT

Query:  RLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
         + FS  + PQTDGQTER NQ +E +LR      P +W  H
Subjt:  RLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH

P0CT41 Transposon Tf2-12 polyprotein3.1e-2729.46Show/hide
Query:  LRNVPSRGRASVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQRV
        L N+ +     VE ++    GLL   +  + +P+D+ +   ++ + H     +HPG   +   + R + W+ +++++ E+V  C  C  Q+  + RN + 
Subjt:  LRNVPSRGRASVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQRV

Query:  YYNLE--HTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGT
        Y  L+         E     F T LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK        
Subjt:  YYNLE--HTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGT

Query:  RLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
         + FS  + PQTDGQTER NQ +E +LR      P +W  H
Subjt:  RLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH

Q9UR07 Transposon Tf2-11 polyprotein3.1e-2729.46Show/hide
Query:  LRNVPSRGRASVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQRV
        L N+ +     VE ++    GLL   +  + +P+D+ +   ++ + H     +HPG   +   + R + W+ +++++ E+V  C  C  Q+  + RN + 
Subjt:  LRNVPSRGRASVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQRV

Query:  YYNLE--HTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGT
        Y  L+         E     F T LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK        
Subjt:  YYNLE--HTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGT

Query:  RLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH
         + FS  + PQTDGQTER NQ +E +LR      P +W  H
Subjt:  RLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSH

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAGAGTAACGATCCTTATCTGGTTGAGAAACGTGCCTAGCAGAGGCAGGGCAAGCGTTGAGTTCTCGTTATCCTCTGATGGTGGACTGTTGTTTGAGAGA
CGCCTCTGTGTTCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCGCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGAC
CTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAAGTAGCAGAATTTGTTAGTAAATGCCTGGTGTGTCATCAGCAGGTTAAGGCACAAGGCAGAAACCAG
CGGGTTTATTACAACCTTGAGCATACCGGAATGGAAGTGGGAGAGTGTCGTGTCCATGGATTTCATACAGGGCTACCGAGAACTCTGAGGGGATTTACAGTGATT
TGGGTTGTGGTGGACAGACTTACTAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGA
TTACACGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGAAGGGCTTGCAGACTGCTATGGGCACGAGGTTAGATTTTAGT
ACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCC
CACTACATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCAGAGTAACGATCCTTATCTGGTTGAGAAACGTGCCTAGCAGAGGCAGGGCAAGCGTTGAGTTCTCGTTATCCTCTGATGGTGGACTGTTGTTTGAGAGA
CGCCTCTGTGTTCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCGCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGAC
CTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAAGTAGCAGAATTTGTTAGTAAATGCCTGGTGTGTCATCAGCAGGTTAAGGCACAAGGCAGAAACCAG
CGGGTTTATTACAACCTTGAGCATACCGGAATGGAAGTGGGAGAGTGTCGTGTCCATGGATTTCATACAGGGCTACCGAGAACTCTGAGGGGATTTACAGTGATT
TGGGTTGTGGTGGACAGACTTACTAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGA
TTACACGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGAAGGGCTTGCAGACTGCTATGGGCACGAGGTTAGATTTTAGT
ACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCC
CACTACATTTGA
Protein sequenceShow/hide protein sequence
MLRVTILIWLRNVPSRGRASVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCHQQVKAQGRNQ
RVYYNLEHTGMEVGECRVHGFHTGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFS
TAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHYI